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Boxiang Sun
cython
Commits
18d8b3fb
Commit
18d8b3fb
authored
Apr 15, 2011
by
Mark Florisson
Committed by
Vitja Makarov
May 05, 2011
Browse files
Options
Browse Files
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Plain Diff
Preliminary OpenMP support
parent
8f47d370
Changes
9
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Showing
9 changed files
with
983 additions
and
22 deletions
+983
-22
Cython/Compiler/Code.py
Cython/Compiler/Code.py
+4
-0
Cython/Compiler/ExprNodes.py
Cython/Compiler/ExprNodes.py
+60
-1
Cython/Compiler/Main.py
Cython/Compiler/Main.py
+2
-1
Cython/Compiler/Nodes.py
Cython/Compiler/Nodes.py
+367
-5
Cython/Compiler/ParseTreeTransforms.py
Cython/Compiler/ParseTreeTransforms.py
+280
-11
Cython/Compiler/Symtab.py
Cython/Compiler/Symtab.py
+3
-2
Cython/Compiler/Tests/TestParseTreeTransforms.py
Cython/Compiler/Tests/TestParseTreeTransforms.py
+57
-0
Cython/Compiler/TypeInference.py
Cython/Compiler/TypeInference.py
+35
-2
tests/run/parallel.pyx
tests/run/parallel.pyx
+175
-0
No files found.
Cython/Compiler/Code.py
View file @
18d8b3fb
...
@@ -1444,6 +1444,10 @@ class CCodeWriter(object):
...
@@ -1444,6 +1444,10 @@ class CCodeWriter(object):
def
put_trace_return
(
self
,
retvalue_cname
):
def
put_trace_return
(
self
,
retvalue_cname
):
self
.
putln
(
"__Pyx_TraceReturn(%s);"
%
retvalue_cname
)
self
.
putln
(
"__Pyx_TraceReturn(%s);"
%
retvalue_cname
)
def
putln_openmp
(
self
,
string
):
self
.
putln
(
"#ifdef _OPENMP"
)
self
.
putln
(
string
)
self
.
putln
(
"#endif"
)
class
PyrexCodeWriter
(
object
):
class
PyrexCodeWriter
(
object
):
# f file output file
# f file output file
...
...
Cython/Compiler/ExprNodes.py
View file @
18d8b3fb
...
@@ -2059,6 +2059,62 @@ class RawCNameExprNode(ExprNode):
...
@@ -2059,6 +2059,62 @@ class RawCNameExprNode(ExprNode):
pass
pass
#-------------------------------------------------------------------
#
# Parallel nodes (cython.parallel.thread(savailable|id))
#
#-------------------------------------------------------------------
class
ParallelThreadsAvailableNode
(
AtomicExprNode
):
"""
Implements cython.parallel.threadsavailable(). If we are called from the
sequential part of the application, we need to call omp_get_max_threads(),
and in the parallel part we can just call omp_get_num_threads()
"""
type
=
PyrexTypes
.
c_int_type
def
analyse_types
(
self
,
env
):
self
.
is_temp
=
True
env
.
add_include_file
(
"omp.h"
)
return
self
.
type
def
generate_result_code
(
self
,
code
):
code
.
putln
(
"#ifdef _OPENMP"
)
code
.
putln
(
"if (omp_in_parallel()) %s = omp_get_max_threads();"
%
self
.
temp_code
)
code
.
putln
(
"else %s = omp_get_num_threads();"
%
self
.
temp_code
)
code
.
putln
(
"#else"
)
code
.
putln
(
"%s = 1;"
%
self
.
temp_code
)
code
.
putln
(
"#endif"
)
def
result
(
self
):
return
self
.
temp_code
class
ParallelThreadIdNode
(
AtomicExprNode
):
#, Nodes.ParallelNode):
"""
Implements cython.parallel.threadid()
"""
type
=
PyrexTypes
.
c_int_type
def
analyse_types
(
self
,
env
):
self
.
is_temp
=
True
env
.
add_include_file
(
"omp.h"
)
return
self
.
type
def
generate_result_code
(
self
,
code
):
code
.
putln
(
"#ifdef _OPENMP"
)
code
.
putln
(
"%s = omp_get_thread_num();"
%
self
.
temp_code
)
code
.
putln
(
"#else"
)
code
.
putln
(
"%s = 0;"
%
self
.
temp_code
)
code
.
putln
(
"#endif"
)
def
result
(
self
):
return
self
.
temp_code
#-------------------------------------------------------------------
#-------------------------------------------------------------------
#
#
# Trailer nodes
# Trailer nodes
...
@@ -3465,8 +3521,11 @@ class AttributeNode(ExprNode):
...
@@ -3465,8 +3521,11 @@ class AttributeNode(ExprNode):
needs_none_check
=
True
needs_none_check
=
True
def
as_cython_attribute
(
self
):
def
as_cython_attribute
(
self
):
if
isinstance
(
self
.
obj
,
NameNode
)
and
self
.
obj
.
is_cython_module
:
if
(
isinstance
(
self
.
obj
,
NameNode
)
and
self
.
obj
.
is_cython_module
and
not
self
.
attribute
==
u"parallel"
):
return
self
.
attribute
return
self
.
attribute
cy
=
self
.
obj
.
as_cython_attribute
()
cy
=
self
.
obj
.
as_cython_attribute
()
if
cy
:
if
cy
:
return
"%s.%s"
%
(
cy
,
self
.
attribute
)
return
"%s.%s"
%
(
cy
,
self
.
attribute
)
...
...
Cython/Compiler/Main.py
View file @
18d8b3fb
...
@@ -106,7 +106,7 @@ class Context(object):
...
@@ -106,7 +106,7 @@ class Context(object):
from
ParseTreeTransforms
import
AnalyseDeclarationsTransform
,
AnalyseExpressionsTransform
from
ParseTreeTransforms
import
AnalyseDeclarationsTransform
,
AnalyseExpressionsTransform
from
ParseTreeTransforms
import
CreateClosureClasses
,
MarkClosureVisitor
,
DecoratorTransform
from
ParseTreeTransforms
import
CreateClosureClasses
,
MarkClosureVisitor
,
DecoratorTransform
from
ParseTreeTransforms
import
InterpretCompilerDirectives
,
TransformBuiltinMethods
from
ParseTreeTransforms
import
InterpretCompilerDirectives
,
TransformBuiltinMethods
from
ParseTreeTransforms
import
ExpandInplaceOperators
from
ParseTreeTransforms
import
ExpandInplaceOperators
,
ParallelRangeTransform
from
TypeInference
import
MarkAssignments
,
MarkOverflowingArithmetic
from
TypeInference
import
MarkAssignments
,
MarkOverflowingArithmetic
from
ParseTreeTransforms
import
AlignFunctionDefinitions
,
GilCheck
from
ParseTreeTransforms
import
AlignFunctionDefinitions
,
GilCheck
from
ParseTreeTransforms
import
RemoveUnreachableCode
from
ParseTreeTransforms
import
RemoveUnreachableCode
...
@@ -136,6 +136,7 @@ class Context(object):
...
@@ -136,6 +136,7 @@ class Context(object):
PostParse
(
self
),
PostParse
(
self
),
_specific_post_parse
,
_specific_post_parse
,
InterpretCompilerDirectives
(
self
,
self
.
compiler_directives
),
InterpretCompilerDirectives
(
self
,
self
.
compiler_directives
),
ParallelRangeTransform
(
self
),
MarkClosureVisitor
(
self
),
MarkClosureVisitor
(
self
),
_align_function_definitions
,
_align_function_definitions
,
RemoveUnreachableCode
(
self
),
RemoveUnreachableCode
(
self
),
...
...
Cython/Compiler/Nodes.py
View file @
18d8b3fb
This diff is collapsed.
Click to expand it.
Cython/Compiler/ParseTreeTransforms.py
View file @
18d8b3fb
This diff is collapsed.
Click to expand it.
Cython/Compiler/Symtab.py
View file @
18d8b3fb
...
@@ -723,6 +723,9 @@ class Scope(object):
...
@@ -723,6 +723,9 @@ class Scope(object):
else:
else:
return outer.is_cpp()
return outer.is_cpp()
def add_include_file(self, filename):
self.outer_scope.add_include_file(filename)
class PreImportScope(Scope):
class PreImportScope(Scope):
namespace_cname = Naming.preimport_cname
namespace_cname = Naming.preimport_cname
...
@@ -1856,8 +1859,6 @@ class CppClassScope(Scope):
...
@@ -1856,8 +1859,6 @@ class CppClassScope(Scope):
utility_code
=
e
.
utility_code
)
utility_code
=
e
.
utility_code
)
return
scope
return
scope
def
add_include_file
(
self
,
filename
):
self
.
outer_scope
.
add_include_file
(
filename
)
class
PropertyScope
(
Scope
):
class
PropertyScope
(
Scope
):
# Scope holding the __get__, __set__ and __del__ methods for
# Scope holding the __get__, __set__ and __del__ methods for
...
...
Cython/Compiler/Tests/TestParseTreeTransforms.py
View file @
18d8b3fb
...
@@ -4,6 +4,7 @@ from Cython.Compiler import CmdLine
...
@@ -4,6 +4,7 @@ from Cython.Compiler import CmdLine
from
Cython.TestUtils
import
TransformTest
from
Cython.TestUtils
import
TransformTest
from
Cython.Compiler.ParseTreeTransforms
import
*
from
Cython.Compiler.ParseTreeTransforms
import
*
from
Cython.Compiler.Nodes
import
*
from
Cython.Compiler.Nodes
import
*
from
Cython.Compiler
import
Main
class
TestNormalizeTree
(
TransformTest
):
class
TestNormalizeTree
(
TransformTest
):
...
@@ -144,6 +145,62 @@ class TestWithTransform(object): # (TransformTest): # Disabled!
...
@@ -144,6 +145,62 @@ class TestWithTransform(object): # (TransformTest): # Disabled!
"""
,
t
)
"""
,
t
)
class
TestInterpretCompilerDirectives
(
TransformTest
):
"""
This class tests the parallel directives AST-rewriting and importing.
"""
# Test the parallel directives (c)importing
import_code
=
u"""
cimport cython.parallel
cimport cython.parallel as par
from cython cimport parallel as par2
from cython cimport parallel
from cython.parallel cimport threadid as tid
from cython.parallel cimport threadavailable as tavail
from cython.parallel cimport prange
"""
expected_directives_dict
=
{
u'cython.parallel'
:
u'cython.parallel'
,
u'par'
:
u'cython.parallel'
,
u'par2'
:
u'cython.parallel'
,
u'parallel'
:
u'cython.parallel'
,
u"tid"
:
u"cython.parallel.threadid"
,
u"tavail"
:
u"cython.parallel.threadavailable"
,
u"prange"
:
u"cython.parallel.prange"
,
}
def
setUp
(
self
):
super
(
TestInterpretCompilerDirectives
,
self
).
setUp
()
compilation_options
=
Main
.
CompilationOptions
(
Main
.
default_options
)
ctx
=
compilation_options
.
create_context
()
self
.
pipeline
=
[
InterpretCompilerDirectives
(
ctx
,
ctx
.
compiler_directives
),
]
self
.
debug_exception_on_error
=
DebugFlags
.
debug_exception_on_error
def
tearDown
(
self
):
DebugFlags
.
debug_exception_on_error
=
self
.
debug_exception_on_error
def
test_parallel_directives_cimports
(
self
):
self
.
run_pipeline
(
self
.
pipeline
,
self
.
import_code
)
parallel_directives
=
self
.
pipeline
[
0
].
parallel_directives
self
.
assertEqual
(
parallel_directives
,
self
.
expected_directives_dict
)
def
test_parallel_directives_imports
(
self
):
self
.
run_pipeline
(
self
.
pipeline
,
self
.
import_code
.
replace
(
u'cimport'
,
u'import'
))
parallel_directives
=
self
.
pipeline
[
0
].
parallel_directives
self
.
assertEqual
(
parallel_directives
,
self
.
expected_directives_dict
)
# TODO: Re-enable once they're more robust.
# TODO: Re-enable once they're more robust.
if
sys
.
version_info
[:
2
]
>=
(
2
,
5
)
and
False
:
if
sys
.
version_info
[:
2
]
>=
(
2
,
5
)
and
False
:
from
Cython.Debugger
import
DebugWriter
from
Cython.Debugger
import
DebugWriter
...
...
Cython/Compiler/TypeInference.py
View file @
18d8b3fb
...
@@ -23,12 +23,24 @@ object_expr = TypedExprNode(py_object_type)
...
@@ -23,12 +23,24 @@ object_expr = TypedExprNode(py_object_type)
class
MarkAssignments
(
CythonTransform
):
class
MarkAssignments
(
CythonTransform
):
def
mark_assignment
(
self
,
lhs
,
rhs
):
def
__init__
(
self
,
context
):
super
(
CythonTransform
,
self
).
__init__
()
self
.
context
=
context
# Track the parallel block scopes (with parallel, for i in prange())
self
.
parallel_block_stack
=
[]
def
mark_assignment
(
self
,
lhs
,
rhs
,
inplace_op
=
None
):
if
isinstance
(
lhs
,
(
ExprNodes
.
NameNode
,
Nodes
.
PyArgDeclNode
)):
if
isinstance
(
lhs
,
(
ExprNodes
.
NameNode
,
Nodes
.
PyArgDeclNode
)):
if
lhs
.
entry
is
None
:
if
lhs
.
entry
is
None
:
# TODO: This shouldn't happen...
# TODO: This shouldn't happen...
return
return
lhs
.
entry
.
assignments
.
append
(
rhs
)
lhs
.
entry
.
assignments
.
append
(
rhs
)
if
self
.
parallel_block_stack
:
parallel_node
=
self
.
parallel_block_stack
[
-
1
]
parallel_node
.
assignments
[
lhs
.
entry
]
=
(
lhs
.
pos
,
inplace_op
)
elif
isinstance
(
lhs
,
ExprNodes
.
SequenceNode
):
elif
isinstance
(
lhs
,
ExprNodes
.
SequenceNode
):
for
arg
in
lhs
.
args
:
for
arg
in
lhs
.
args
:
self
.
mark_assignment
(
arg
,
object_expr
)
self
.
mark_assignment
(
arg
,
object_expr
)
...
@@ -48,7 +60,7 @@ class MarkAssignments(CythonTransform):
...
@@ -48,7 +60,7 @@ class MarkAssignments(CythonTransform):
return
node
return
node
def
visit_InPlaceAssignmentNode
(
self
,
node
):
def
visit_InPlaceAssignmentNode
(
self
,
node
):
self
.
mark_assignment
(
node
.
lhs
,
node
.
create_binop_node
())
self
.
mark_assignment
(
node
.
lhs
,
node
.
create_binop_node
()
,
node
.
operator
)
self
.
visitchildren
(
node
)
self
.
visitchildren
(
node
)
return
node
return
node
...
@@ -127,6 +139,27 @@ class MarkAssignments(CythonTransform):
...
@@ -127,6 +139,27 @@ class MarkAssignments(CythonTransform):
self
.
visitchildren
(
node
)
self
.
visitchildren
(
node
)
return
node
return
node
def
visit_ParallelStatNode
(
self
,
node
):
if
self
.
parallel_block_stack
:
node
.
parent
=
self
.
parallel_block_stack
[
-
1
]
else
:
node
.
parent
=
None
if
node
.
is_prange
:
if
not
node
.
parent
:
node
.
is_parallel
=
True
else
:
node
.
is_parallel
=
(
node
.
parent
.
is_prange
or
not
node
.
parent
.
is_parallel
)
else
:
node
.
is_parallel
=
True
self
.
parallel_block_stack
.
append
(
node
)
self
.
visitchildren
(
node
)
self
.
parallel_block_stack
.
pop
()
return
node
class
MarkOverflowingArithmetic
(
CythonTransform
):
class
MarkOverflowingArithmetic
(
CythonTransform
):
# It may be possible to integrate this with the above for
# It may be possible to integrate this with the above for
...
...
tests/run/parallel.pyx
0 → 100644
View file @
18d8b3fb
# tag: run
# distutils: libraries = gomp
# distutils: extra_compile_args = -fopenmp
cimport
cython.parallel
from
cython.parallel
import
prange
,
threadid
from
libc.stdlib
cimport
malloc
,
free
cdef
extern
from
"Python.h"
:
void
PyEval_InitThreads
()
PyEval_InitThreads
()
cdef
void
print_int
(
int
x
)
with
gil
:
print
x
#@cython.test_assert_path_exists(
# "//ParallelWithBlockNode//ParallelRangeNode[@schedule = 'dynamic']",
# "//GILStatNode[@state = 'nogil]//ParallelRangeNode")
def
test_prange
():
"""
>>> test_prange()
(9, 9, 45, 45)
"""
cdef
Py_ssize_t
i
,
j
,
sum1
=
0
,
sum2
=
0
with
nogil
,
cython
.
parallel
.
parallel
:
for
i
in
prange
(
10
,
schedule
=
'dynamic'
):
sum1
+=
i
for
j
in
prange
(
10
,
nogil
=
True
):
sum2
+=
j
return
i
,
j
,
sum1
,
sum2
def
test_descending_prange
():
"""
>>> test_descending_prange()
5
"""
cdef
int
i
,
start
=
5
,
stop
=
-
5
,
step
=
-
2
cdef
int
sum
=
0
for
i
in
prange
(
start
,
stop
,
step
,
nogil
=
True
):
sum
+=
i
return
sum
def
test_nested_prange
():
"""
Reduction propagation is not (yet) supported.
>>> test_nested_prange()
50
"""
cdef
int
i
,
j
cdef
int
sum
=
0
for
i
in
prange
(
5
,
nogil
=
True
):
for
j
in
prange
(
5
):
sum
+=
i
# The value of sum is undefined here
sum
=
0
for
i
in
prange
(
5
,
nogil
=
True
):
for
j
in
prange
(
5
):
sum
+=
i
sum
+=
0
return
sum
# threadsavailable test, disable this for now as it won't compile
#def test_parallel():
# """
# >>> test_parallel()
# """
# cdef int *buf = <int *> malloc(sizeof(int) * threadsavailable())
#
# if buf == NULL:
# raise MemoryError
#
# with nogil, cython.parallel.parallel:
# buf[threadid()] = threadid()
#
# for i in range(threadsavailable()):
# assert buf[i] == i
#
# free(buf)
def
test_unsigned_operands
():
"""
This test is disabled, as this currently does not work (neither does it
for 'for i from x < i < y:'. I'm not sure we should strife to support
this, at least the C compiler gives a warning.
test_unsigned_operands()
10
"""
cdef
int
i
cdef
int
start
=
-
5
cdef
unsigned
int
stop
=
5
cdef
int
step
=
1
cdef
int
steps_taken
=
0
for
i
in
prange
(
start
,
stop
,
step
,
nogil
=
True
):
steps_taken
+=
1
return
steps_taken
def
test_reassign_start_stop_step
():
"""
>>> test_reassign_start_stop_step()
20
"""
cdef
int
start
=
0
,
stop
=
10
,
step
=
2
cdef
int
i
cdef
int
sum
=
0
for
i
in
prange
(
start
,
stop
,
step
,
nogil
=
True
):
start
=
-
2
stop
=
2
step
=
0
sum
+=
i
return
sum
def
test_closure_parallel_privates
():
"""
>>> test_closure_parallel_privates()
9 9
45 45
0 0 9 9
"""
cdef
int
x
def
test_target
():
nonlocal
x
for
x
in
prange
(
10
,
nogil
=
True
):
pass
return
x
print
test_target
(),
x
def
test_reduction
():
nonlocal
x
cdef
int
i
x
=
0
for
i
in
prange
(
10
,
nogil
=
True
):
x
+=
i
return
x
print
test_reduction
(),
x
def
test_generator
():
nonlocal
x
cdef
int
i
x
=
0
yield
x
x
=
2
for
i
in
prange
(
10
,
nogil
=
True
):
x
=
i
yield
x
g
=
test_generator
()
print
g
.
next
(),
x
,
g
.
next
(),
x
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