Feat/upgrade numpy

See merge request !1280

component/cython/buildout.cfg

@@ -6,4 +6,4 @@ recipe = zc.recipe.egg:custom
 egg = cython
 
 [versions]
-Cython = 0.29.21
+cython = 0.29.24

component/macros/macro.pythonpath.eggs.cfg

+[buildout]
+parts =
+
+[macro.pythonpath.eggs]
+recipe = slapos.recipe.build
+_name_ = ${:_buildout_section_name_}
+init =
+  prerequisite = """
+  [.%(_name_)s.prerequisite]
+  recipe = slapos.recipe.build
+  init =
+    section = self.buildout['%(_name_)s']
+    self.eggs = [e.strip() for e in section['eggs'].splitlines() if e.strip()]
+  update =
+    from zc.buildout.easy_install import working_set
+    buildout = self.buildout['buildout']
+    eggs_directory = buildout['eggs-directory']
+    develop_eggs_directory = buildout['develop-eggs-directory']
+    dists = working_set(self.eggs, [develop_eggs_directory, eggs_directory])
+    paths = ':'.join(dist.location for dist in dists)
+    self.buildout['%(environment)s']['PYTHONPATH'] = paths
+    print("PYTHONPATH=" + paths)
+  """ % options
+  self.buildout.parse(prerequisite)

component/matplotlib/buildout.cfg

@@ -36,3 +36,10 @@ rpath =
   ${libpng:location}/lib
   ${freetype:location}/lib
 need-matplotlibrc = ${matplotlibrc:location}
+
+[versions]
+matplotlib = 2.1.2
+cycler = 0.11.0
+
+[versions:sys.version_info < (3,8)]
+cycler = 0.10.0

component/numpy/buildout.cfg

 [buildout]
+extends =
+  ../cython/buildout.cfg
+  ../macros/macro.pythonpath.eggs.cfg
 parts = numpy
 
+[numpy-env]
+BLAS=None
+LAPACK=None
+ATLAS=None
+
 [numpy]
 recipe = zc.recipe.egg:custom
 egg = numpy
+environment = numpy-env
+depends = ${numpy-pythonpath:recipe}
 
+[numpy-pythonpath]
+<= macro.pythonpath.eggs
+environment = numpy-env
+eggs = ${cython:egg}
 
 [versions]
+numpy = 1.22.0
+
+[numpy:sys.version_info < (3,8)]
+depends =
+
+[versions:sys.version_info < (3,8)]
 numpy = 1.16.4

component/numpy/openblas.cfg

@@ -2,6 +2,7 @@
 extends =
   buildout.cfg
   ../openblas/buildout.cfg
+parts = numpy
 
 [numpy-env]
 OPENBLAS = ${openblas:location}/lib/libopenblas.so
@@ -10,5 +11,4 @@ ATLAS = ${openblas:location}/lib/libopenblas.so
 
 [numpy]
 environment = numpy-env
-rpath =
-  ${openblas:location}/lib
+rpath = ${openblas:location}/lib

component/pandas/buildout.cfg

 [buildout]
 extends =
+  ../cython/buildout.cfg
   ../numpy/buildout.cfg
 
 parts =
@@ -12,4 +13,15 @@ parts =
 recipe = zc.recipe.egg:custom
 egg = pandas
 environment = pandas-env
-setup-eggs = ${numpy:egg}
+setup-eggs =
+  ${numpy:egg}
+
+[pandas:sys.version_info >= (3,8)]
+setup-eggs +=
+  ${cython:egg}
+
+[versions]
+pandas = 0.25.3
+
+[versions:sys.version_info >= (3,8)]
+pandas = 1.4.0

component/scipy/buildout.cfg

 [buildout]
+# Scipy requires BLAS/LAPACK libraries.
 extends =
   ../numpy/openblas.cfg
-
-parts =
-  scipy
+  ../pandas/buildout.cfg
+parts = scipy
 
 [scipy-env]
 <= numpy-env
@@ -14,3 +14,31 @@ egg = scipy
 environment = scipy-env
 setup-eggs = ${numpy:egg}
 rpath = ${numpy:rpath}
+depends = ${scipy-pythonpath:recipe}
+
+[scipy-pythonpath]
+<= macro.pythonpath.eggs
+environment = scipy-env
+eggs = ${scipy-setup-eggs:eggs}
+
+[scipy-setup-eggs]
+recipe = zc.recipe.egg
+eggs =
+  ${cython:egg}
+  ${numpy:egg}
+  ${pandas:egg}
+  pythran
+  pybind11
+
+[versions]
+pybind11 = 2.9.2
+scipy = 1.8.1
+beniget = 0.4.1
+gast = 0.5.3
+pythran = 0.11.0:whl
+
+[scipy:sys.version_info < (3,8)]
+depends =
+
+[versions:sys.version_info < (3,8)]
+scipy = 1.0.1

stack/erp5/buildout.cfg

@@ -795,7 +795,6 @@ nt-svcutils = 2.13.0
 oauth2client = 4.0.0
 oauthlib = 3.1.0
 objgraph = 3.1.0
-ply = 3.10
 polib = 1.0.8
 pprofile = 2.0.4
 pyasn1-modules = 0.0.8

stack/slapos.cfg

@@ -201,6 +201,7 @@ pim-dm = 1.4.0nxd001
 pkgconfig = 1.5.1
 plone.recipe.command = 1.1
 pluggy = 0.13.1:whl
+ply = 3.11
 prettytable = 0.7.2
 psutil = 5.8.0
 py = 1.11.0:whl
@@ -215,7 +216,7 @@ pyroute2 = 0.6.9
 pyrsistent = 0.18.1
 PyRSS2Gen = 1.1
 pytest-runner = 5.2:whl
-python-dateutil = 2.7.3:whl
+python-dateutil = 2.8.2:whl
 pytz = 2022.2.1
 PyYAML = 5.4.1
 regex = 2020.9.27