slapos_metadata_transform_agent: Add scripts for Alarm_handleAnalysis

Alarm_handleAnalysis.py is a Wendelin script.
The scripts added here create the ERP5 objects necessary to handle an
incoming scan as raw data.

master/bt5/slapos_metadata_transform_agent/SkinTemplateItem/portal_skins/slapos_metadata_transform_agent/DataAnalysis_executeDataOperation.py

+portal = context.getPortalObject()
+operation = None
+use = None
+parameter_dict = {}
+context.checkConsistency(fixit=True)
+initial_product = context.getSpecialiseValue(portal_type="Data Transformation").getResourceValue()
+for analysis_line in context.objectValues(portal_type="Data Analysis Line"):
+  resource = analysis_line.getResourceValue()
+  if resource == initial_product:
+    use = analysis_line.getUse()
+  if resource is not None:
+    resource_portal_type = resource.getPortalType()
+  else:
+    resource_portal_type = ''
+  if resource_portal_type == 'Data Operation':
+    operation_analysis_line = analysis_line
+    operation = analysis_line.getResourceValue()
+  else:
+    parameter = {}
+    for portal_type in ["Data Array", "Progress Indicator"] + \
+                        list(portal.getPortalDataSinkTypeList()) + \
+                        list(portal.getPortalDataDescriptorTypeList()):
+      value = analysis_line.getAggregateValue(portal_type=portal_type)
+      if value is not None:
+        parameter[portal_type] = value
+
+    #data array
+    for value in analysis_line.getAggregateValueList(portal_type='Data Array'):
+      if value.getSimulationState() != 'processed':
+        parameter['Data Array'] = value
+
+    for base_category in analysis_line.getVariationRangeBaseCategoryList():
+      parameter[base_category] = analysis_line.getVariationCategoryItemList(
+                                   base_category_list=(base_category,))[0][0]
+    reference = analysis_line.getReference()
+    # several lines with same reference wil turn the parameter into a list
+    if reference in parameter_dict:
+      if not isinstance(parameter_dict[reference], list):
+        parameter_dict[reference] = [parameter_dict[reference]]
+      parameter_dict[reference].append(parameter)
+    else:
+      parameter_dict[reference] = parameter
+script_id = operation.getScriptId()
+out = getattr(operation_analysis_line, script_id)(**parameter_dict)
+
+if out == 1:
+  context.activate(serialization_tag=str(context.getUid())).DataAnalysis_executeDataOperation()
+else:
+  # only stop batch ingestions
+  if use == "big_data/ingestion/batch":
+    context.stop()
+  # stop refresh
+  if context.getRefreshState() == "refresh_started":
+    context.stopRefresh()
+
+return out

master/bt5/slapos_metadata_transform_agent/SkinTemplateItem/portal_skins/slapos_metadata_transform_agent/DataAnalysis_executeDataOperation.xml

+<?xml version="1.0"?>
+<ZopeData>
+  <record id="1" aka="AAAAAAAAAAE=">
+    <pickle>
+      <global name="PythonScript" module="Products.PythonScripts.PythonScript"/>
+    </pickle>
+    <pickle>
+      <dictionary>
+        <item>
+            <key> <string>Script_magic</string> </key>
+            <value> <int>3</int> </value>
+        </item>
+        <item>
+            <key> <string>_bind_names</string> </key>
+            <value>
+              <object>
+                <klass>
+                  <global name="NameAssignments" module="Shared.DC.Scripts.Bindings"/>
+                </klass>
+                <tuple/>
+                <state>
+                  <dictionary>
+                    <item>
+                        <key> <string>_asgns</string> </key>
+                        <value>
+                          <dictionary>
+                            <item>
+                                <key> <string>name_container</string> </key>
+                                <value> <string>container</string> </value>
+                            </item>
+                            <item>
+                                <key> <string>name_context</string> </key>
+                                <value> <string>context</string> </value>
+                            </item>
+                            <item>
+                                <key> <string>name_m_self</string> </key>
+                                <value> <string>script</string> </value>
+                            </item>
+                            <item>
+                                <key> <string>name_subpath</string> </key>
+                                <value> <string>traverse_subpath</string> </value>
+                            </item>
+                          </dictionary>
+                        </value>
+                    </item>
+                  </dictionary>
+                </state>
+              </object>
+            </value>
+        </item>
+        <item>
+            <key> <string>_params</string> </key>
+            <value> <string>consuming_analysis_list=[], transient_input_item=None</string> </value>
+        </item>
+        <item>
+            <key> <string>id</string> </key>
+            <value> <string>DataAnalysis_executeDataOperation</string> </value>
+        </item>
+      </dictionary>
+    </pickle>
+  </record>
+</ZopeData>

master/bt5/slapos_metadata_transform_agent/SkinTemplateItem/portal_skins/slapos_metadata_transform_agent/ERP5Site_createDataAnalysisList.py

+from DateTime import DateTime
+from Products.ZSQLCatalog.SQLCatalog import AndQuery, OrQuery, Query
+from Products.ERP5Type.Errors import UnsupportedWorkflowMethod
+
+portal = context.getPortalObject()
+portal_catalog = portal.portal_catalog
+
+now = DateTime()
+
+if not include_delivered:
+  batch_simulation_state = "stopped"
+  stream_simulation_state = "started"
+
+else:
+  batch_simulation_state = ["stopped", "delivered"]
+  stream_simulation_state = ["started", "stopped", "delivered"]
+
+query = AndQuery(
+          Query(portal_type = ["Data Ingestion Line", "Data Analysis Line"]),
+          Query(**{"stock.quantity": "!=0"}),
+          Query(resource_portal_type = "Data Product"),
+          # Should be improved to support mor than one analysis per ingestion
+          #SimpleQuery(parent_causality_related_relative_url = None),
+          OrQuery(Query(simulation_state = batch_simulation_state,
+                        use_relative_url = "use/big_data/ingestion/batch"),
+                  Query(simulation_state =  stream_simulation_state,
+                        use_relative_url = "use/big_data/ingestion/stream")))
+
+for movement in portal_catalog(query = query):
+  if movement.getQuantity() <= 0:
+    continue
+  if movement.DataIngestionLine_hasMissingRequiredItem():
+    raise ValueError("Transformation requires movement to have " +
+                     "aggregated data ingestion batch")
+  delivery = movement.getParentValue()
+  data_supply = delivery.getSpecialiseValue(portal_type="Data Supply")
+  data_supply_list = delivery.getSpecialiseValueList(portal_type="Data Supply")
+  composed_data_supply = data_supply.asComposedDocument()
+  # Get applicable transformation
+  transformation_list = []
+  for transformation in composed_data_supply.getSpecialiseValueList(portal_type="Data Transformation"):
+    for line in transformation.objectValues():
+      if line.getResourceValue() == movement.getResourceValue() and line.getQuantity() < 0:
+        transformation_list.append(transformation)
+        break
+  for transformation in portal.portal_catalog(
+      portal_type = "Data Transformation",
+      validation_state = "validated",
+      resource_relative_url = movement.getResource()):
+    if transformation.getVariationCategoryList() ==  movement.getVariationCategoryList():
+      transformation_list.append(transformation)
+
+  for transformation in transformation_list:
+    is_shared_data_analysis = False
+    # Check if analysis already exists
+    data_analysis = portal_catalog.getResultValue(
+      portal_type="Data Analysis",
+      specialise_relative_url = transformation.getRelativeUrl(),
+      causality_relative_url = delivery.getRelativeUrl())
+    if data_analysis is not None:
+      # Find data array line
+      for data_analysis_line in data_analysis.objectValues(portal_type='Data Analysis Line'):
+        data_array_list = data_analysis_line.getAggregateValueList(portal_type='Data Array')
+        if data_array_list:
+          has_to_check_array = False
+          for data_array in data_array_list:
+            if data_array.getSimulationState() != 'processed':
+              has_to_check_array = True
+              break
+          # all data array is checked, create new one
+          if not has_to_check_array:
+            module = portal.getDefaultModule('Data Array')
+            data_array = module.newContent(portal_type = 'Data Array',
+                                       title = transformation.getTitle(),
+                                       reference = "%s-%s" %(transformation.getTitle(),delivery.getReference()))
+            data_analysis_line.setAggregateValueList(data_analysis_line.getAggregateValueList() + [data_array])
+          break
+
+      continue
+    # for first level analysis check if same kind of data analysis with same project and same source already exists
+    # If yes, then later add additional input lines to this shared data analysis
+    if delivery.getPortalType() == "Data Ingestion":
+      data_analysis = portal_catalog.getResultValue(
+        portal_type="Data Analysis",
+        specialise_relative_url = transformation.getRelativeUrl(),
+        source_relative_url = delivery.getSource(),
+        destination_project_relative_url = delivery.getDestinationProject())
+    if data_analysis is not None:
+      data_analysis.setDefaultCausalityValue(delivery)
+      data_analysis.setSpecialiseValueSet(data_analysis.getSpecialiseValueList() + data_supply_list)
+      is_shared_data_analysis = True
+    else:
+      # Create Analysis
+      data_analysis = portal.data_analysis_module.newContent(
+                    portal_type = "Data Analysis",
+                    title = transformation.getTitle(),
+                    reference = delivery.getReference(),
+                    start_date = delivery.getStartDate(),
+                    stop_date = delivery.getStopDate(),
+                    specialise_value_list = [transformation] + data_supply_list,
+                    causality_value = delivery,
+                    source = delivery.getSource(),
+                    source_section = delivery.getSourceSection(),
+                    source_project = delivery.getSourceProject(),
+                    destination = delivery.getDestination(),
+                    destination_section = delivery.getDestinationSection(),
+                    destination_project = delivery.getDestinationProject())
+    data_analysis.checkConsistency(fixit=True)
+    # create input and output lines
+    for transformation_line in transformation.objectValues(
+        portal_type=["Data Transformation Resource Line",
+                     "Data Transformation Operation Line"]):
+      resource = transformation_line.getResourceValue()
+      quantity = transformation_line.getQuantity()
+      if isinstance(quantity, tuple):
+        quantity = quantity[0]
+      # In case of shared data anylsis only add additional input lines
+      if is_shared_data_analysis and quantity > -1:
+        continue
+      aggregate_set = set()
+      # manually add device to every line
+      aggregate_set.add(movement.getAggregateDevice())
+      if transformation_line.getPortalType() == \
+          "Data Transformation Resource Line":
+        # at the moment, we only check for positive or negative quantity
+        if quantity < 0:
+          # it is an input line
+          # aggregate transformed item from data ingestion batch related to our
+          # movement. If it is an input resource line, then we search for an
+          # ingestion line with the same resource. If it is an operation line
+          # then we search for an ingestion line with resource portal type
+          # Data Product
+          batch_relative_url = movement.getAggregateDataIngestionBatch()
+          if batch_relative_url is not None:
+            related_movement_list = portal_catalog(
+              portal_type="Data Ingestion Line",
+              aggregate_relative_url=batch_relative_url,
+              resource_relative_url = resource.getRelativeUrl())
+          else:
+            # get related movements only from current data ingestion
+            related_movement_list = movement.getParentValue().searchFolder(
+              portal_type=["Data Ingestion Line", "Data Analysis Line"],
+              resource_relative_url = resource.getRelativeUrl())
+          for related_movement in related_movement_list:
+            aggregate_set.update(related_movement.getAggregateSet())
+            if related_movement.getUse() == "big_data/ingestion/batch":
+              related_movement.getParentValue().deliver()
+        # create new item based on item_type if it is not already aggregated
+        aggregate_type_set = set(
+          [portal.restrictedTraverse(a).getPortalType() for a in aggregate_set])
+        for item_type in transformation_line.getAggregatedPortalTypeList():
+          # create item if it does note exist yet.
+          # Except if it is a Data Array Line, then it is currently created by
+          # data operation itself (probably this exception is inconsistent)
+          if item_type not in aggregate_type_set and item_type != "Data Array Line":
+            item_query_dict = dict(
+              portal_type=item_type,
+              validation_state="validated",
+              item_variation_text=transformation_line.getVariationText(),
+              item_device_relative_url=movement.getAggregateDevice(),
+              item_resource_uid=resource.getUid(),
+              item_source_relative_url=data_analysis.getSource())
+
+            if data_analysis.getDestinationProjectValue() is not None:
+              item_query_dict["item_project_relative_url"] = data_analysis.getDestinationProject()
+            item = portal.portal_catalog.getResultValue(**item_query_dict)
+
+            if item is None:
+              module = portal.getDefaultModule(item_type)
+              item = module.newContent(portal_type = item_type,
+                                title = transformation.getTitle(),
+                                reference = "%s-%s" %(transformation.getTitle(),
+                                                      delivery.getReference()),
+                                version = '001')
+              try:
+                item.validate()
+              except AttributeError:
+                pass
+            aggregate_set.add(item.getRelativeUrl())
+      # find other items such as device configuration and data configuration
+      # from data ingestion and data supply
+      composed = data_analysis.asComposedDocument()
+      line_list = [l for l in delivery.objectValues(portal_type="Data Ingestion Line")]
+      line_list +=  [l for l in composed.objectValues(portal_type="Data Supply Line")]
+      for line in line_list:
+        if line.getResourceValue().getPortalType() == "Data Operation":
+          aggregate_set.update(line.getAggregateList())
+
+      data_analysis_line = data_analysis.newContent(
+        portal_type = "Data Analysis Line",
+        title = transformation_line.getTitle(),
+        reference = transformation_line.getReference(),
+        int_index = transformation_line.getIntIndex(),
+        resource_value = resource,
+        variation_category_list = transformation_line.getVariationCategoryList(),
+        quantity = quantity,
+        quantity_unit = transformation_line.getQuantityUnit(),
+        use = transformation_line.getUse(),
+        aggregate_set = aggregate_set)
+
+      # for intput lines of first level analysis set causality and specialise
+      if quantity < 0 and delivery.getPortalType() == "Data Ingestion":
+        data_analysis_line.edit(
+          causality_value = delivery,
+          specialise_value_list = data_supply_list)
+    data_analysis.checkConsistency(fixit=True)
+    try:
+      data_analysis.start()
+    except UnsupportedWorkflowMethod:
+      pass

master/bt5/slapos_metadata_transform_agent/SkinTemplateItem/portal_skins/slapos_metadata_transform_agent/ERP5Site_createDataAnalysisList.xml

+<?xml version="1.0"?>
+<ZopeData>
+  <record id="1" aka="AAAAAAAAAAE=">
+    <pickle>
+      <global name="PythonScript" module="Products.PythonScripts.PythonScript"/>
+    </pickle>
+    <pickle>
+      <dictionary>
+        <item>
+            <key> <string>Script_magic</string> </key>
+            <value> <int>3</int> </value>
+        </item>
+        <item>
+            <key> <string>_bind_names</string> </key>
+            <value>
+              <object>
+                <klass>
+                  <global name="NameAssignments" module="Shared.DC.Scripts.Bindings"/>
+                </klass>
+                <tuple/>
+                <state>
+                  <dictionary>
+                    <item>
+                        <key> <string>_asgns</string> </key>
+                        <value>
+                          <dictionary>
+                            <item>
+                                <key> <string>name_container</string> </key>
+                                <value> <string>container</string> </value>
+                            </item>
+                            <item>
+                                <key> <string>name_context</string> </key>
+                                <value> <string>context</string> </value>
+                            </item>
+                            <item>
+                                <key> <string>name_m_self</string> </key>
+                                <value> <string>script</string> </value>
+                            </item>
+                            <item>
+                                <key> <string>name_subpath</string> </key>
+                                <value> <string>traverse_subpath</string> </value>
+                            </item>
+                          </dictionary>
+                        </value>
+                    </item>
+                  </dictionary>
+                </state>
+              </object>
+            </value>
+        </item>
+        <item>
+            <key> <string>_params</string> </key>
+            <value> <string>include_delivered=False</string> </value>
+        </item>
+        <item>
+            <key> <string>id</string> </key>
+            <value> <string>ERP5Site_createDataAnalysisList</string> </value>
+        </item>
+      </dictionary>
+    </pickle>
+  </record>
+</ZopeData>