Minimize the amount of work during tpc_finish

NEO did not ensure that all data and metadata are written on disk before
tpc_finish, and it was for example vulnerable to ENOSPC errors.
In other words, some work had to be moved to tpc_vote:

- In tpc_vote, all involved storage nodes are now asked to write all metadata
  to ttrans/tobj and _commit_. Because the final tid is not known yet, the tid
  column of ttrans and tobj now contains NULL and the ttid respectively.

- In tpc_finish, AskLockInformation is still required for read locking,
  ttrans.tid is updated with the final value and this change is _committed_.

- The verification phase is greatly simplified, more reliable and faster. For
  all voted transactions, we can know if a tpc_finish was started by getting
  the final tid from the ttid, either from ttrans or from trans. And we know
  that such transactions can't be partial so we don't need to check oids.

So in addition to minimizing the risk of failures during tpc_finish, we also
fix a bug causing the verification phase to discard transactions with objects
for which readCurrent was called.

On performance side:

- Although tpc_vote now asks all involved storages, instead of only those
  storing the transaction metadata, the client has been improved to do this
  in parallel. The additional commits are also all done in parallel.

- A possible improvement to compensate the additional commits is to delay the
  commit done by the unlock.

- By minimizing the time to lock transactions, objects are read-locked for a
  much shorter period. This is even more important that locked transactions
  must be unlocked in the same order.

Transactions with too many modified objects will now timeout inside tpc_vote
instead of tpc_finish. Of course, such transactions may still cause other
transaction to timeout in tpc_finish.

TODO

@@ -58,8 +58,6 @@
       committed by future transactions.
     - Add a 'devid' storage configuration so that master do not distribute
       replicated partitions on storages with same 'devid'.
-    - Make tpc_finish safer as described in its __doc__: moving work to
-      tpc_vote and recover from master failure when possible.
 
     Storage
     - Use libmysqld instead of a stand-alone MySQL server.

neo/client/app.py

@@ -612,18 +612,29 @@ class Application(ThreadedApplication):
         packet = Packets.AskStoreTransaction(ttid, str(transaction.user),
             str(transaction.description), dumps(transaction._extension),
             txn_context['cache_dict'])
-        add_involved_nodes = txn_context['involved_nodes'].add
+        queue = txn_context['queue']
+        trans_nodes = []
         for node, conn in self.cp.iterateForObject(ttid):
             logging.debug("voting transaction %s on %s", dump(ttid),
                 dump(conn.getUUID()))
             try:
-                self._askStorage(conn, packet)
+                conn.ask(packet, queue=queue)
             except ConnectionClosed:
                 continue
-            add_involved_nodes(node)
-
+            trans_nodes.append(node)
         # check at least one storage node accepted
-        if txn_context['involved_nodes']:
+        if trans_nodes:
+            involved_nodes = txn_context['involved_nodes']
+            packet = Packets.AskVoteTransaction(ttid)
+            for node in involved_nodes.difference(trans_nodes):
+                conn = self.cp.getConnForNode(node)
+                if conn is not None:
+                    try:
+                        conn.ask(packet, queue=queue)
+                    except ConnectionClosed:
+                        pass
+            involved_nodes.update(trans_nodes)
+            self.waitResponses(queue)
             txn_context['voted'] = None
             # We must not go further if connection to master was lost since
             # tpc_begin, to lower the probability of failing during tpc_finish.
@@ -667,27 +678,14 @@ class Application(ThreadedApplication):
         fail in tpc_finish. In particular, making a transaction permanent
         should ideally be as simple as switching a bit permanently.
 
-        In NEO, tpc_finish breaks this promise by not ensuring earlier that all
-        data and metadata are written, and it is for example vulnerable to
-        ENOSPC errors. In other words, some work should be moved to tpc_vote.
-
-        TODO: - In tpc_vote, all involved storage nodes must be asked to write
-                all metadata to ttrans/tobj and _commit_. AskStoreTransaction
-                can be extended for this: for nodes that don't store anything
-                in ttrans, it can just contain the ttid. The final tid is not
-                known yet, so ttrans/tobj would contain the ttid.
-              - In tpc_finish, AskLockInformation is still required for read
-                locking, ttrans.tid must be updated with the final value and
-                ttrans _committed_.
-              - The Verification phase would need some change because
-                ttrans/tobj may contain data for which tpc_finish was not
-                called. The ttid is also in trans so a mapping ttid<->tid is
-                always possible and can be forwarded via the master so that all
-                storage are still able to update the tid column with the final
-                value when moving rows from tobj to obj.
-              The resulting cost is:
-              - additional RPCs in tpc_vote
-              - 1 updated row in ttrans + commit
+        In NEO, all the data (with the exception of the tid, simply because
+        it is not known yet) is already flushed on disk at the end on the vote.
+        During tpc_finish, all nodes storing the transaction metadata are asked
+        to commit by saving the new tid and flushing again: for SQL backends,
+        it's just an UPDATE of 1 cell. At last, the metadata is moved to
+        a final place so that the new transaction is readable, but this is
+        something that can always be replayed (during the verification phase)
+        if any failure happens.
 
         TODO: We should recover from master failures when the transaction got
               successfully committed. More precisely, we should not raise:

neo/client/handlers/storage.py

@@ -112,9 +112,11 @@ class StorageAnswersHandler(AnswerBaseHandler):
 
     answerCheckCurrentSerial = answerStoreObject
 
-    def answerStoreTransaction(self, conn, _):
+    def answerStoreTransaction(self, conn):
         pass
 
+    answerVoteTransaction = answerStoreTransaction
+
     def answerTIDsFrom(self, conn, tid_list):
         logging.debug('Get %u TIDs from %r', len(tid_list), conn)
         self.app.setHandlerData(tid_list)

neo/lib/protocol.py

@@ -786,8 +786,8 @@ class StopOperation(Packet):
 
 class UnfinishedTransactions(Packet):
     """
-    Ask unfinished transactions  PM -> S.
-    Answer unfinished transactions  S -> PM.
+    Ask unfinished transactions  S -> PM.
+    Answer unfinished transactions  PM -> S.
     """
     _answer = PStruct('answer_unfinished_transactions',
         PTID('max_tid'),
@@ -796,36 +796,36 @@ class UnfinishedTransactions(Packet):
         ),
     )
 
-class ObjectPresent(Packet):
+class LockedTransactions(Packet):
     """
-    Ask if an object is present. If not present, OID_NOT_FOUND should be
-    returned. PM -> S.
-    Answer that an object is present. PM -> S.
+    Ask locked transactions  PM -> S.
+    Answer locked transactions  S -> PM.
     """
-    _fmt = PStruct('object_present',
-        POID('oid'),
-        PTID('tid'),
-    )
-
-    _answer = PStruct('object_present',
-        POID('oid'),
-        PTID('tid'),
+    _answer = PStruct('answer_locked_transactions',
+        PDict('tid_dict',
+            PTID('ttid'),
+            PTID('tid'),
+        ),
     )
 
-class DeleteTransaction(Packet):
+class FinalTID(Packet):
     """
-    Delete a transaction. PM -> S.
+    Return final tid if ttid has been committed. * -> S.
     """
-    _fmt = PStruct('delete_transaction',
+    _fmt = PStruct('final_tid',
+        PTID('ttid'),
+    )
+
+    _answer = PStruct('final_tid',
         PTID('tid'),
-        PFOidList,
     )
 
-class CommitTransaction(Packet):
+class ValidateTransaction(Packet):
     """
     Commit a transaction. PM -> S.
     """
-    _fmt = PStruct('commit_transaction',
+    _fmt = PStruct('validate_transaction',
+        PTID('ttid'),
         PTID('tid'),
     )
 
@@ -878,11 +878,10 @@ class LockInformation(Packet):
     _fmt = PStruct('ask_lock_informations',
         PTID('ttid'),
         PTID('tid'),
-        PFOidList,
     )
 
     _answer = PStruct('answer_information_locked',
-        PTID('tid'),
+        PTID('ttid'),
     )
 
 class InvalidateObjects(Packet):
@@ -899,7 +898,7 @@ class UnlockInformation(Packet):
     Unlock information on a transaction. PM -> S.
     """
     _fmt = PStruct('notify_unlock_information',
-        PTID('tid'),
+        PTID('ttid'),
     )
 
 class GenerateOIDs(Packet):
@@ -961,10 +960,17 @@ class StoreTransaction(Packet):
         PString('extension'),
         PFOidList,
     )
+    _answer = PFEmpty
 
-    _answer = PStruct('answer_store_transaction',
+class VoteTransaction(Packet):
+    """
+    Ask to store a transaction. C -> S.
+    Answer if transaction has been stored. S -> C.
+    """
+    _fmt = PStruct('ask_vote_transaction',
         PTID('tid'),
     )
+    _answer = PFEmpty
 
 class GetObject(Packet):
     """
@@ -1600,12 +1606,12 @@ class Packets(dict):
                     StopOperation)
     AskUnfinishedTransactions, AnswerUnfinishedTransactions = register(
                     UnfinishedTransactions)
-    AskObjectPresent, AnswerObjectPresent = register(
-                    ObjectPresent)
-    DeleteTransaction = register(
-                    DeleteTransaction)
-    CommitTransaction = register(
-                    CommitTransaction)
+    AskLockedTransactions, AnswerLockedTransactions = register(
+                    LockedTransactions)
+    AskFinalTID, AnswerFinalTID = register(
+                    FinalTID)
+    ValidateTransaction = register(
+                    ValidateTransaction)
     AskBeginTransaction, AnswerBeginTransaction = register(
                     BeginTransaction)
     AskFinishTransaction, AnswerTransactionFinished = register(
@@ -1624,6 +1630,8 @@ class Packets(dict):
                     AbortTransaction)
     AskStoreTransaction, AnswerStoreTransaction = register(
                     StoreTransaction)
+    AskVoteTransaction, AnswerVoteTransaction = register(
+                    VoteTransaction)
     AskObject, AnswerObject = register(
                     GetObject)
     AskTIDs, AnswerTIDs = register(

neo/master/handlers/client.py

@@ -59,9 +59,10 @@ class ClientServiceHandler(MasterHandler):
         pt = app.pt
 
         # Collect partitions related to this transaction.
-        lock_oid_list = oid_list + checked_list
-        partition_set = set(map(pt.getPartition, lock_oid_list))
-        partition_set.add(pt.getPartition(ttid))
+        getPartition = pt.getPartition
+        partition_set = set(map(getPartition, oid_list))
+        partition_set.update(map(getPartition, checked_list))
+        partition_set.add(getPartition(ttid))
 
         # Collect the UUIDs of nodes related to this transaction.
         uuid_list = filter(app.isStorageReady, {cell.getUUID()
@@ -85,7 +86,6 @@ class ClientServiceHandler(MasterHandler):
                 {x.getUUID() for x in identified_node_list},
                 conn.getPeerId(),
             ),
-            lock_oid_list,
         )
         for node in identified_node_list:
             node.ask(p, timeout=60)

neo/master/transactions.py

@@ -359,7 +359,12 @@ class TransactionManager(object):
             self._unlockPending()
 
     def _unlockPending(self):
-        # unlock pending transactions
+        """Serialize transaction unlocks
+
+        This should rarely delay unlocks since the time needed to lock a
+        transaction is roughly constant. The most common case where reordering
+        is required is when some storages are already busy by other tasks.
+        """
         queue = self._queue
         pop = queue.pop
         insert = queue.insert

neo/master/verification.py

@@ -14,6 +14,7 @@
 # You should have received a copy of the GNU General Public License
 # along with this program.  If not, see <http://www.gnu.org/licenses/>.
 
+from collections import defaultdict
 from neo.lib import logging
 from neo.lib.util import dump
 from neo.lib.protocol import ClusterStates, Packets, NodeStates
@@ -37,10 +38,9 @@ class VerificationManager(BaseServiceHandler):
     """
 
     def __init__(self, app):
-        self._oid_set = set()
-        self._tid_set = set()
+        self._locked_dict = {}
+        self._voted_dict = defaultdict(set)
         self._uuid_set = set()
-        self._object_present = False
 
     def _askStorageNodesAndWait(self, packet, node_list):
         poll = self.app.em.poll
@@ -87,7 +87,6 @@ class VerificationManager(BaseServiceHandler):
         self.app.broadcastPartitionChanges(self.app.pt.outdate())
 
     def verifyData(self):
-        """Verify the data in storage nodes and clean them up, if necessary."""
         app = self.app
 
         # wait for any missing node
@@ -100,106 +99,59 @@ class VerificationManager(BaseServiceHandler):
         logging.info('start to verify data')
         getIdentifiedList = app.nm.getIdentifiedList
 
-        # Gather all unfinished transactions.
-        self._askStorageNodesAndWait(Packets.AskUnfinishedTransactions(),
+        # Gather all transactions that may have been partially finished.
+        self._askStorageNodesAndWait(Packets.AskLockedTransactions(),
             [x for x in getIdentifiedList() if x.isStorage()])
 
-        # Gather OIDs for each unfinished TID, and verify whether the
-        # transaction can be finished or must be aborted. This could be
-        # in parallel in theory, but not so easy. Thus do it one-by-one
-        # at the moment.
-        for tid in self._tid_set:
-            uuid_set = self.verifyTransaction(tid)
-            if uuid_set is None:
-                packet = Packets.DeleteTransaction(tid, self._oid_set or [])
-                # Make sure that no node has this transaction.
-                for node in getIdentifiedList():
-                    if node.isStorage():
-                        node.notify(packet)
+        # Some nodes may have already unlocked these transactions and
+        # _locked_dict is incomplete, but we can ask them the final tid.
+        for ttid, voted_set in self._voted_dict.iteritems():
+            if ttid in self._locked_dict:
+                continue
+            partition = app.pt.getPartition(ttid)
+            for node in getIdentifiedList(pool_set={cell.getUUID()
+                    # If an outdated cell had unlocked ttid, then either
+                    # it is already in _locked_dict or a readable cell also
+                    # unlocked it.
+                    for cell in app.pt.getCellList(partition, readable=True)
+                    } - voted_set):
+                self._askStorageNodesAndWait(Packets.AskFinalTID(ttid), (node,))
+                if self._tid is not None:
+                    self._locked_dict[ttid] = self._tid
+                    break
             else:
-                if app.getLastTransaction() < tid: # XXX: refactoring needed
-                    app.setLastTransaction(tid)
-                    app.tm.setLastTID(tid)
-                packet = Packets.CommitTransaction(tid)
+                # Transaction not locked. No need to tell nodes to delete it,
+                # since they drop any unfinished data just before being
+                # operational.
+                pass
+
+        # Finish all transactions for which we know that tpc_finish was called
+        # but not fully processed. This may include replicas with transactions
+        # that were not even locked.
+        for ttid, tid in self._locked_dict.iteritems():
+            uuid_set = self._voted_dict.get(ttid)
+            if uuid_set:
+                packet = Packets.ValidateTransaction(ttid, tid)
                 for node in getIdentifiedList(pool_set=uuid_set):
                     node.notify(packet)
-            self._oid_set = set()
-            # If possible, send the packets now.
-            app.em.poll(0)
-
-    def verifyTransaction(self, tid):
-        nm = self.app.nm
-        uuid_set = set()
-
-        # Determine to which nodes I should ask.
-        partition = self.app.pt.getPartition(tid)
-        uuid_list = [cell.getUUID() for cell \
-                in self.app.pt.getCellList(partition, readable=True)]
-        if len(uuid_list) == 0:
-            raise VerificationFailure
-        uuid_set.update(uuid_list)
-
-        # Gather OIDs.
-        node_list = self.app.nm.getIdentifiedList(pool_set=uuid_list)
-        if len(node_list) == 0:
-            raise VerificationFailure
-        self._askStorageNodesAndWait(Packets.AskTransactionInformation(tid),
-            node_list)
-
-        if self._oid_set is None or len(self._oid_set) == 0:
-            # Not commitable.
-            return None
-        # Verify that all objects are present.
-        for oid in self._oid_set:
-            partition = self.app.pt.getPartition(oid)
-            object_uuid_list = [cell.getUUID() for cell \
-                        in self.app.pt.getCellList(partition, readable=True)]
-            if len(object_uuid_list) == 0:
-                raise VerificationFailure
-            uuid_set.update(object_uuid_list)
-
-            self._object_present = True
-            self._askStorageNodesAndWait(Packets.AskObjectPresent(oid, tid),
-                nm.getIdentifiedList(pool_set=object_uuid_list))
-            if not self._object_present:
-                # Not commitable.
-                return None
-
-        return uuid_set
-
-    def answerUnfinishedTransactions(self, conn, max_tid, tid_list):
-        logging.info('got unfinished transactions %s from %r',
-                     map(dump, tid_list), conn)
-        self._uuid_set.remove(conn.getUUID())
-        self._tid_set.update(tid_list)
-
-    def answerTransactionInformation(self, conn, tid,
-                                           user, desc, ext, packed, oid_list):
-        self._uuid_set.remove(conn.getUUID())
-        oid_set = set(oid_list)
-        if self._oid_set is None:
-            # Someone does not agree.
-            pass
-        elif len(self._oid_set) == 0:
-            # This is the first answer.
-            self._oid_set.update(oid_set)
-        elif self._oid_set != oid_set:
-            raise ValueError, "Inconsistent transaction %s" % \
-                (dump(tid, ))
-
-    def tidNotFound(self, conn, message):
-        logging.info('TID not found: %s', message)
-        self._uuid_set.remove(conn.getUUID())
-        self._oid_set = None
-
-    def answerObjectPresent(self, conn, oid, tid):
-        logging.info('object %s:%s found', dump(oid), dump(tid))
-        self._uuid_set.remove(conn.getUUID())
-
-    def oidNotFound(self, conn, message):
-        logging.info('OID not found: %s', message)
+            if app.getLastTransaction() < tid: # XXX: refactoring needed
+                app.setLastTransaction(tid)
+                app.tm.setLastTID(tid)
+
+        # If possible, send the packets now.
+        app.em.poll(0)
+
+    def answerLockedTransactions(self, conn, tid_dict):
+        uuid = conn.getUUID()
+        self._uuid_set.remove(uuid)
+        for ttid, tid in tid_dict.iteritems():
+            if tid:
+                self._locked_dict[ttid] = tid
+            self._voted_dict[ttid].add(uuid)
+
+    def answerFinalTID(self, conn, tid):
         self._uuid_set.remove(conn.getUUID())
-        self._object_present = False
+        self._tid = tid
 
     def connectionCompleted(self, conn):
         pass

neo/scripts/runner.py

@@ -53,7 +53,6 @@ UNIT_TEST_MODULES = [
     'neo.tests.storage.testMasterHandler',
     'neo.tests.storage.testStorageApp',
     'neo.tests.storage.testStorage' + os.getenv('NEO_TESTS_ADAPTER', 'SQLite'),
-    'neo.tests.storage.testVerificationHandler',
     'neo.tests.storage.testIdentificationHandler',
     'neo.tests.storage.testTransactions',
     # client application

neo/storage/database/importer.py

@@ -297,8 +297,9 @@ class ImporterDatabaseManager(DatabaseManager):
         self.db = buildDatabaseManager(main['adapter'],
             (main['database'], main.get('engine'), main['wait']))
         for x in """query erase getConfiguration _setConfiguration
-                    getPartitionTable changePartitionTable getUnfinishedTIDList
-                    dropUnfinishedData storeTransaction finishTransaction
+                    getPartitionTable changePartitionTable
+                    getUnfinishedTIDDict dropUnfinishedData abortTransaction
+                    storeTransaction lockTransaction unlockTransaction
                     storeData _pruneData
                  """.split():
             setattr(self, x, getattr(self.db, x))
@@ -421,7 +422,7 @@ class ImporterDatabaseManager(DatabaseManager):
         logging.warning("All data are imported. You should change"
             " your configuration to use the native backend and restart.")
         self._import = None
-        for x in """getObject objectPresent getReplicationTIDList
+        for x in """getObject getReplicationTIDList
                  """.split():
             setattr(self, x, getattr(self.db, x))
 
@@ -434,23 +435,11 @@ class ImporterDatabaseManager(DatabaseManager):
         zodb = self.zodb[bisect(self.zodb_index, oid) - 1]
         return zodb, oid - zodb.shift_oid
 
-    def getLastIDs(self, all=True):
-        tid, _, _, oid = self.db.getLastIDs(all)
+    def getLastIDs(self):
+        tid, _, _, oid = self.db.getLastIDs()
         return (max(tid, util.p64(self.zodb_ltid)), None, None,
                 max(oid, util.p64(self.zodb_loid)))
 
-    def objectPresent(self, oid, tid, all=True):
-        r = self.db.objectPresent(oid, tid, all)
-        if not r:
-            u_oid = util.u64(oid)
-            u_tid = util.u64(tid)
-            if self.inZodb(u_oid, u_tid):
-                zodb, oid = self.zodbFromOid(u_oid)
-                try:
-                    return zodb.loadSerial(util.p64(oid), tid)
-                except POSKeyError:
-                    pass
-
     def getObject(self, oid, tid=None, before_tid=None):
         u64 = util.u64
         u_oid = u64(oid)
@@ -511,6 +500,16 @@ class ImporterDatabaseManager(DatabaseManager):
         else:
             return self.db.getTransaction(tid, all)
 
+    def getFinalTID(self, ttid):
+        if u64(ttid) <= self.zodb_ltid and self._import:
+            raise NotImplementedError
+        return self.db.getFinalTID(ttid)
+
+    def deleteTransaction(self, tid):
+        if u64(tid) <= self.zodb_ltid and self._import:
+            raise NotImplementedError
+        self.db.deleteTransaction(tid)
+
     def getReplicationTIDList(self, min_tid, max_tid, length, partition):
         p64 = util.p64
         tid = p64(self.zodb_tid)

neo/storage/database/manager.py

@@ -222,10 +222,10 @@ class DatabaseManager(object):
         """
         raise NotImplementedError
 
-    def _getLastIDs(self, all=True):
+    def _getLastIDs(self):
         raise NotImplementedError
 
-    def getLastIDs(self, all=True):
+    def getLastIDs(self):
         trans, obj, oid = self._getLastIDs()
         if trans:
             tid = max(trans.itervalues())
@@ -241,16 +241,16 @@ class DatabaseManager(object):
         trans = obj = {}
         return tid, trans, obj, oid
 
-    def getUnfinishedTIDList(self):
-        """Return a list of unfinished transaction's IDs."""
+    def _getUnfinishedTIDDict(self):
         raise NotImplementedError
 
-    def objectPresent(self, oid, tid, all = True):
-        """Return true iff an object specified by a given pair of an
-        object ID and a transaction ID is present in a database.
-        Otherwise, return false. If all is true, the object must be
-        searched from unfinished transactions as well."""
-        raise NotImplementedError
+    def getUnfinishedTIDDict(self):
+        trans, obj = self._getUnfinishedTIDDict()
+        obj = dict.fromkeys(obj)
+        obj.update(trans)
+        p64 = util.p64
+        return {p64(ttid): None if tid is None else p64(tid)
+                for ttid, tid in obj.iteritems()}
 
     @fallback
     def getLastObjectTID(self, oid):
@@ -478,14 +478,18 @@ class DatabaseManager(object):
             data_tid = p64(data_tid)
         return p64(current_tid), data_tid, is_current
 
-    def finishTransaction(self, tid):
-        """Finish a transaction specified by a given ID, by moving
-        temporarily data to a finished area."""
+    def lockTransaction(self, tid, ttid):
+        """Mark voted transaction 'ttid' as committed with given 'tid'"""
+        raise NotImplementedError
+
+    def unlockTransaction(self, tid, ttid):
+        """Finalize a transaction by moving data to a finished area."""
+        raise NotImplementedError
+
+    def abortTransaction(self, ttid):
         raise NotImplementedError
 
-    def deleteTransaction(self, tid, oid_list=()):
-        """Delete a transaction and its content specified by a given ID and
-        an oid list"""
+    def deleteTransaction(self, tid):
         raise NotImplementedError
 
     def deleteObject(self, oid, serial=None):

neo/storage/database/mysqldb.py

@@ -214,7 +214,7 @@ class MySQLDatabaseManager(DatabaseManager):
         # The table "ttrans" stores information on uncommitted transactions.
         q("""CREATE TABLE IF NOT EXISTS ttrans (
                  `partition` SMALLINT UNSIGNED NOT NULL,
-                 tid BIGINT UNSIGNED NOT NULL,
+                 tid BIGINT UNSIGNED,
                  packed BOOLEAN NOT NULL,
                  oids MEDIUMBLOB NOT NULL,
                  user BLOB NOT NULL,
@@ -274,7 +274,7 @@ class MySQLDatabaseManager(DatabaseManager):
         return self.query("SELECT MAX(t) FROM (SELECT MAX(tid) as t FROM trans"
             " WHERE tid<=%s GROUP BY `partition`) as t" % max_tid)[0][0]
 
-    def _getLastIDs(self, all=True):
+    def _getLastIDs(self):
         p64 = util.p64
         q = self.query
         trans = {partition: p64(tid)
@@ -285,29 +285,21 @@ class MySQLDatabaseManager(DatabaseManager):
                                     " FROM obj GROUP BY `partition`")}
         oid = q("SELECT MAX(oid) FROM (SELECT MAX(oid) AS oid FROM obj"
                                       " GROUP BY `partition`) as t")[0][0]
-        if all:
-            tid = q("SELECT MAX(tid) FROM ttrans")[0][0]
-            if tid is not None:
-                trans[None] = p64(tid)
-            tid, toid = q("SELECT MAX(tid), MAX(oid) FROM tobj")[0]
-            if tid is not None:
-                obj[None] = p64(tid)
-            if toid is not None and (oid < toid or oid is None):
-                oid = toid
         return trans, obj, None if oid is None else p64(oid)
 
-    def getUnfinishedTIDList(self):
-        p64 = util.p64
-        return [p64(t[0]) for t in self.query("SELECT tid FROM ttrans"
-                                       " UNION SELECT tid FROM tobj")]
-
-    def objectPresent(self, oid, tid, all = True):
-        oid = util.u64(oid)
-        tid = util.u64(tid)
+    def _getUnfinishedTIDDict(self):
         q = self.query
-        return q("SELECT 1 FROM obj WHERE `partition`=%d AND oid=%d AND tid=%d"
-                 % (self._getPartition(oid), oid, tid)) or all and \
-               q("SELECT 1 FROM tobj WHERE tid=%d AND oid=%d" % (tid, oid))
+        return q("SELECT ttid, tid FROM ttrans"), (ttid
+            for ttid, in q("SELECT DISTINCT tid FROM tobj"))
+
+    def getFinalTID(self, ttid):
+        ttid = util.u64(ttid)
+        # MariaDB is smart enough to realize that 'ttid' is constant.
+        r = self.query("SELECT tid FROM trans"
+            " WHERE `partition`=%s AND tid>=ttid AND ttid=%s LIMIT 1"
+            % (self._getPartition(ttid), ttid))
+        if r:
+            return util.p64(r[0][0])
 
     def getLastObjectTID(self, oid):
         oid = util.u64(oid)
@@ -450,9 +442,9 @@ class MySQLDatabaseManager(DatabaseManager):
             oid_list, user, desc, ext, packed, ttid = transaction
             partition = self._getPartition(tid)
             assert packed in (0, 1)
-            q("REPLACE INTO %s VALUES (%d,%d,%i,'%s','%s','%s','%s',%d)" % (
-                trans_table, partition, tid, packed, e(''.join(oid_list)),
-                e(user), e(desc), e(ext), u64(ttid)))
+            q("REPLACE INTO %s VALUES (%s,%s,%s,'%s','%s','%s','%s',%s)" % (
+                trans_table, partition, 'NULL' if temporary else tid, packed,
+                e(''.join(oid_list)), e(user), e(desc), e(ext), u64(ttid)))
         if temporary:
             self.commit()
 
@@ -544,40 +536,40 @@ class MySQLDatabaseManager(DatabaseManager):
         r = self.query(sql)
         return r[0] if r else (None, None)
 
-    def finishTransaction(self, tid):
+    def lockTransaction(self, tid, ttid):
+        u64 = util.u64
+        self.query("UPDATE ttrans SET tid=%d WHERE ttid=%d LIMIT 1"
+                   % (u64(tid), u64(ttid)))
+        self.commit()
+
+    def unlockTransaction(self, tid, ttid):
         q = self.query
-        tid = util.u64(tid)
-        sql = " FROM tobj WHERE tid=%d" % tid
+        u64 = util.u64
+        tid = u64(tid)
+        sql = " FROM tobj WHERE tid=%d" % u64(ttid)
         data_id_list = [x for x, in q("SELECT data_id" + sql) if x]
-        q("INSERT INTO obj SELECT *" + sql)
-        q("DELETE FROM tobj WHERE tid=%d" % tid)
+        q("INSERT INTO obj SELECT `partition`, oid, %d, data_id, value_tid %s"
+          % (tid, sql))
+        q("DELETE" + sql)
         q("INSERT INTO trans SELECT * FROM ttrans WHERE tid=%d" % tid)
         q("DELETE FROM ttrans WHERE tid=%d" % tid)
         self.releaseData(data_id_list)
         self.commit()
 
-    def deleteTransaction(self, tid, oid_list=()):
-        u64 = util.u64
-        tid = u64(tid)
-        getPartition = self._getPartition
+    def abortTransaction(self, ttid):
+        ttid = util.u64(ttid)
         q = self.query
-        sql = " FROM tobj WHERE tid=%d" % tid
+        sql = " FROM tobj WHERE tid=%s" % ttid
         data_id_list = [x for x, in q("SELECT data_id" + sql) if x]
-        self.releaseData(data_id_list)
         q("DELETE" + sql)
-        q("""DELETE FROM ttrans WHERE tid = %d""" % tid)
-        q("""DELETE FROM trans WHERE `partition` = %d AND tid = %d""" %
-            (getPartition(tid), tid))
-        # delete from obj using indexes
-        data_id_list = set(data_id_list)
-        for oid in oid_list:
-            oid = u64(oid)
-            sql = " FROM obj WHERE `partition`=%d AND oid=%d AND tid=%d" \
-               % (getPartition(oid), oid, tid)
-            data_id_list.update(*q("SELECT data_id" + sql))
-            q("DELETE" + sql)
-        data_id_list.discard(None)
-        self._pruneData(data_id_list)
+        q("DELETE FROM ttrans WHERE ttid=%s" % ttid)
+        self.releaseData(data_id_list, True)
+
+    def deleteTransaction(self, tid):
+        tid = util.u64(tid)
+        getPartition = self._getPartition
+        self.query("DELETE FROM trans WHERE `partition`=%s AND tid=%s" %
+            (self._getPartition(tid), tid))
 
     def deleteObject(self, oid, serial=None):
         u64 = util.u64

neo/storage/database/sqlite.py

@@ -162,7 +162,7 @@ class SQLiteDatabaseManager(DatabaseManager):
         # The table "ttrans" stores information on uncommitted transactions.
         q("""CREATE TABLE IF NOT EXISTS ttrans (
                  partition INTEGER NOT NULL,
-                 tid INTEGER NOT NULL,
+                 tid INTEGER,
                  packed BOOLEAN NOT NULL,
                  oids BLOB NOT NULL,
                  user BLOB NOT NULL,
@@ -221,7 +221,7 @@ class SQLiteDatabaseManager(DatabaseManager):
         return self.query("SELECT MAX(tid) FROM trans WHERE tid<=?",
                           (max_tid,)).next()[0]
 
-    def _getLastIDs(self, all=True):
+    def _getLastIDs(self):
         p64 = util.p64
         q = self.query
         trans = {partition: p64(tid)
@@ -232,30 +232,21 @@ class SQLiteDatabaseManager(DatabaseManager):
                                     " FROM obj GROUP BY partition")}
         oid = q("SELECT MAX(oid) FROM (SELECT MAX(oid) AS oid FROM obj"
                                       " GROUP BY partition) as t").next()[0]
-        if all:
-            tid = q("SELECT MAX(tid) FROM ttrans").next()[0]
-            if tid is not None:
-                trans[None] = p64(tid)
-            tid, toid = q("SELECT MAX(tid), MAX(oid) FROM tobj").next()
-            if tid is not None:
-                obj[None] = p64(tid)
-            if toid is not None and (oid < toid or oid is None):
-                oid = toid
         return trans, obj, None if oid is None else p64(oid)
 
-    def getUnfinishedTIDList(self):
-        p64 = util.p64
-        return [p64(t[0]) for t in self.query("SELECT tid FROM ttrans"
-                                       " UNION SELECT tid FROM tobj")]
-
-    def objectPresent(self, oid, tid, all=True):
-        oid = util.u64(oid)
-        tid = util.u64(tid)
+    def _getUnfinishedTIDDict(self):
         q = self.query
-        return q("SELECT 1 FROM obj WHERE partition=? AND oid=? AND tid=?",
-                 (self._getPartition(oid), oid, tid)).fetchone() or all and \
-               q("SELECT 1 FROM tobj WHERE tid=? AND oid=?",
-                 (tid, oid)).fetchone()
+        return q("SELECT ttid, tid FROM ttrans"), (ttid
+            for ttid, in q("SELECT DISTINCT tid FROM tobj"))
+
+    def getFinalTID(self, ttid):
+        ttid = util.u64(ttid)
+        # As of SQLite 3.8.7.1, 'tid>=ttid' would ignore the index on tid,
+        # even though ttid is a constant.
+        for tid, in self.query("SELECT tid FROM trans"
+                " WHERE partition=? AND tid>=? AND ttid=? LIMIT 1",
+                (self._getPartition(ttid), ttid, ttid)):
+            return util.p64(tid)
 
     def getLastObjectTID(self, oid):
         oid = util.u64(oid)
@@ -362,7 +353,8 @@ class SQLiteDatabaseManager(DatabaseManager):
             partition = self._getPartition(tid)
             assert packed in (0, 1)
             q("INSERT OR FAIL INTO %strans VALUES (?,?,?,?,?,?,?,?)" % T,
-                (partition, tid, packed, buffer(''.join(oid_list)),
+                (partition, None if temporary else tid,
+                 packed, buffer(''.join(oid_list)),
                  buffer(user), buffer(desc), buffer(ext), u64(ttid)))
         if temporary:
             self.commit()
@@ -407,40 +399,41 @@ class SQLiteDatabaseManager(DatabaseManager):
         r = r.fetchone()
         return r or (None, None)
 
-    def finishTransaction(self, tid):
-        args = util.u64(tid),
+    def lockTransaction(self, tid, ttid):
+        u64 = util.u64
+        self.query("UPDATE ttrans SET tid=? WHERE ttid=?",
+                   (u64(tid), u64(ttid)))
+        self.commit()
+
+    def unlockTransaction(self, tid, ttid):
         q = self.query
+        u64 = util.u64
+        tid = u64(tid)
+        ttid = u64(ttid)
         sql = " FROM tobj WHERE tid=?"
-        data_id_list = [x for x, in q("SELECT data_id" + sql, args) if x]
-        q("INSERT OR FAIL INTO obj SELECT *" + sql, args)
-        q("DELETE FROM tobj WHERE tid=?", args)
-        q("INSERT OR FAIL INTO trans SELECT * FROM ttrans WHERE tid=?", args)
-        q("DELETE FROM ttrans WHERE tid=?", args)
+        data_id_list = [x for x, in q("SELECT data_id" + sql, (ttid,)) if x]
+        q("INSERT INTO obj SELECT partition, oid, ?, data_id, value_tid" + sql,
+          (tid, ttid))
+        q("DELETE" + sql, (ttid,))
+        q("INSERT INTO trans SELECT * FROM ttrans WHERE tid=?", (tid,))
+        q("DELETE FROM ttrans WHERE tid=?", (tid,))
         self.releaseData(data_id_list)
         self.commit()
 
-    def deleteTransaction(self, tid, oid_list=()):
-        u64 = util.u64
-        tid = u64(tid)
-        getPartition = self._getPartition
+    def abortTransaction(self, ttid):
+        args = util.u64(ttid),
         q = self.query
         sql = " FROM tobj WHERE tid=?"
-        data_id_list = [x for x, in q("SELECT data_id" + sql, (tid,)) if x]
-        self.releaseData(data_id_list)
-        q("DELETE" + sql, (tid,))
-        q("DELETE FROM ttrans WHERE tid=?", (tid,))
-        q("DELETE FROM trans WHERE partition=? AND tid=?",
-            (getPartition(tid), tid))
-        # delete from obj using indexes
-        data_id_list = set(data_id_list)
-        for oid in oid_list:
-            oid = u64(oid)
-            sql = " FROM obj WHERE partition=? AND oid=? AND tid=?"
-            args = getPartition(oid), oid, tid
-            data_id_list.update(*q("SELECT data_id" + sql, args))
-            q("DELETE" + sql, args)
-        data_id_list.discard(None)
-        self._pruneData(data_id_list)
+        data_id_list = [x for x, in q("SELECT data_id" + sql, args) if x]
+        q("DELETE" + sql, args)
+        q("DELETE FROM ttrans WHERE ttid=?", args)
+        self.releaseData(data_id_list, True)
+
+    def deleteTransaction(self, tid):
+        tid = util.u64(tid)
+        getPartition = self._getPartition
+        self.query("DELETE FROM trans WHERE partition=? AND tid=?",
+            (self._getPartition(tid), tid))
 
     def deleteObject(self, oid, serial=None):
         oid = util.u64(oid)

neo/storage/handlers/__init__.py

@@ -56,3 +56,6 @@ class BaseMasterHandler(EventHandler):
 
     def answerUnfinishedTransactions(self, conn, *args, **kw):
         self.app.replicator.setUnfinishedTIDList(*args, **kw)
+
+    def askFinalTID(self, conn, ttid):
+        conn.answer(Packets.AnswerFinalTID(self.app.dm.getFinalTID(ttid)))

neo/storage/handlers/client.py

@@ -19,7 +19,7 @@ from neo.lib.handler import EventHandler
 from neo.lib.util import dump, makeChecksum
 from neo.lib.protocol import Packets, LockState, Errors, ProtocolError, \
     ZERO_HASH, INVALID_PARTITION
-from ..transactions import ConflictError, DelayedError
+from ..transactions import ConflictError, DelayedError, NotRegisteredError
 from ..exception import AlreadyPendingError
 import time
 
@@ -68,21 +68,17 @@ class ClientOperationHandler(EventHandler):
     def abortTransaction(self, conn, ttid):
         self.app.tm.abort(ttid)
 
-    def askStoreTransaction(self, conn, ttid, user, desc, ext, oid_list):
+    def askStoreTransaction(self, conn, ttid, *txn_info):
         self.app.tm.register(conn.getUUID(), ttid)
-        self.app.tm.storeTransaction(ttid, oid_list, user, desc, ext, False)
-        conn.answer(Packets.AnswerStoreTransaction(ttid))
+        self.app.tm.vote(ttid, txn_info)
+        conn.answer(Packets.AnswerStoreTransaction())
+
+    def askVoteTransaction(self, conn, ttid):
+        self.app.tm.vote(ttid)
+        conn.answer(Packets.AnswerVoteTransaction())
 
     def _askStoreObject(self, conn, oid, serial, compression, checksum, data,
             data_serial, ttid, unlock, request_time):
-        if ttid not in self.app.tm:
-            # transaction was aborted, cancel this event
-            logging.info('Forget store of %s:%s by %s delayed by %s',
-                    dump(oid), dump(serial), dump(ttid),
-                    dump(self.app.tm.getLockingTID(oid)))
-            # send an answer as the client side is waiting for it
-            conn.answer(Packets.AnswerStoreObject(0, oid, serial))
-            return
         try:
             self.app.tm.storeObject(ttid, serial, oid, compression,
                     checksum, data, data_serial, unlock)
@@ -101,6 +97,13 @@ class ClientOperationHandler(EventHandler):
                     raise_on_duplicate=unlock)
             except AlreadyPendingError:
                 conn.answer(Errors.AlreadyPending(dump(oid)))
+        except NotRegisteredError:
+            # transaction was aborted, cancel this event
+            logging.info('Forget store of %s:%s by %s delayed by %s',
+                    dump(oid), dump(serial), dump(ttid),
+                    dump(self.app.tm.getLockingTID(oid)))
+            # send an answer as the client side is waiting for it
+            conn.answer(Packets.AnswerStoreObject(0, oid, serial))
         else:
             if SLOW_STORE is not None:
                 duration = time.time() - request_time
@@ -189,14 +192,6 @@ class ClientOperationHandler(EventHandler):
         self._askCheckCurrentSerial(conn, ttid, serial, oid, time.time())
 
     def _askCheckCurrentSerial(self, conn, ttid, serial, oid, request_time):
-        if ttid not in self.app.tm:
-            # transaction was aborted, cancel this event
-            logging.info('Forget serial check of %s:%s by %s delayed by %s',
-                dump(oid), dump(serial), dump(ttid),
-                dump(self.app.tm.getLockingTID(oid)))
-            # send an answer as the client side is waiting for it
-            conn.answer(Packets.AnswerCheckCurrentSerial(0, oid, serial))
-            return
         try:
             self.app.tm.checkCurrentSerial(ttid, serial, oid)
         except ConflictError, err:
@@ -210,6 +205,13 @@ class ClientOperationHandler(EventHandler):
                     serial, oid, request_time), key=(oid, ttid))
             except AlreadyPendingError:
                 conn.answer(Errors.AlreadyPending(dump(oid)))
+        except NotRegisteredError:
+            # transaction was aborted, cancel this event
+            logging.info('Forget serial check of %s:%s by %s delayed by %s',
+                dump(oid), dump(serial), dump(ttid),
+                dump(self.app.tm.getLockingTID(oid)))
+            # send an answer as the client side is waiting for it
+            conn.answer(Packets.AnswerCheckCurrentSerial(0, oid, serial))
         else:
             if SLOW_STORE is not None:
                 duration = time.time() - request_time

neo/storage/handlers/master.py

@@ -42,17 +42,11 @@ class MasterOperationHandler(BaseMasterHandler):
         # Check changes for replications
         app.replicator.notifyPartitionChanges(cell_list)
 
-    def askLockInformation(self, conn, ttid, tid, oid_list):
-        if not ttid in self.app.tm:
-            raise ProtocolError('Unknown transaction')
-        self.app.tm.lock(ttid, tid, oid_list)
-        if not conn.isClosed():
-            conn.answer(Packets.AnswerInformationLocked(ttid))
+    def askLockInformation(self, conn, ttid, tid):
+        self.app.tm.lock(ttid, tid)
+        conn.answer(Packets.AnswerInformationLocked(ttid))
 
     def notifyUnlockInformation(self, conn, ttid):
-        if not ttid in self.app.tm:
-            raise ProtocolError('Unknown transaction')
-        # TODO: send an answer
         self.app.tm.unlock(ttid)
 
     def askPack(self, conn, tid):
@@ -60,8 +54,7 @@ class MasterOperationHandler(BaseMasterHandler):
         logging.info('Pack started, up to %s...', dump(tid))
         app.dm.pack(tid, app.tm.updateObjectDataForPack)
         logging.info('Pack finished.')
-        if not conn.isClosed():
-            conn.answer(Packets.AnswerPack(True))
+        conn.answer(Packets.AnswerPack(True))
 
     def replicate(self, conn, tid, upstream_name, source_dict):
         self.app.replicator.backup(tid, {p: a and (a, upstream_name)

neo/storage/handlers/verification.py

@@ -16,8 +16,7 @@
 
 from . import BaseMasterHandler
 from neo.lib import logging
-from neo.lib.protocol import Packets, Errors, INVALID_TID, ZERO_TID
-from neo.lib.util import dump
+from neo.lib.protocol import Packets, ZERO_TID
 from neo.lib.exception import OperationFailure
 
 class VerificationHandler(BaseMasterHandler):
@@ -62,31 +61,14 @@ class VerificationHandler(BaseMasterHandler):
     def stopOperation(self, conn):
         raise OperationFailure('operation stopped')
 
-    def askUnfinishedTransactions(self, conn):
-        tid_list = self.app.dm.getUnfinishedTIDList()
-        conn.answer(Packets.AnswerUnfinishedTransactions(INVALID_TID, tid_list))
+    def askLockedTransactions(self, conn):
+        conn.answer(Packets.AnswerLockedTransactions(
+            self.app.dm.getUnfinishedTIDDict()))
 
-    def askTransactionInformation(self, conn, tid):
-        app = self.app
-        t = app.dm.getTransaction(tid, all=True)
-        if t is None:
-            p = Errors.TidNotFound('%s does not exist' % dump(tid))
-        else:
-            p = Packets.AnswerTransactionInformation(tid, t[1], t[2], t[3],
-                    t[4], t[0])
-        conn.answer(p)
-
-    def askObjectPresent(self, conn, oid, tid):
-        if self.app.dm.objectPresent(oid, tid):
-            p = Packets.AnswerObjectPresent(oid, tid)
-        else:
-            p = Errors.OidNotFound(
-                          '%s:%s do not exist' % (dump(oid), dump(tid)))
-        conn.answer(p)
-
-    def deleteTransaction(self, conn, tid, oid_list):
-        self.app.dm.deleteTransaction(tid, oid_list)
-
-    def commitTransaction(self, conn, tid):
-        self.app.dm.finishTransaction(tid)
+    def askFinalTID(self, conn, ttid):
+        conn.answer(Packets.AnswerFinalTID(self.app.dm.getFinalTID(ttid)))
 
+    def validateTransaction(self, conn, ttid, tid):
+        dm = self.app.dm
+        dm.lockTransaction(tid, ttid)
+        dm.unlockTransaction(tid, ttid)

neo/storage/transactions.py

@@ -38,18 +38,22 @@ class DelayedError(Exception):
         Raised when an object is locked by a previous transaction
     """
 
+class NotRegisteredError(Exception):
+    """
+        Raised when a ttid is not registered
+    """
 
 class Transaction(object):
     """
         Container for a pending transaction
     """
     _tid = None
+    has_trans = False
 
     def __init__(self, uuid, ttid):
         self._uuid = uuid
         self._ttid = ttid
         self._object_dict = {}
-        self._transaction = None
         self._locked = False
         self._birth = time()
         self._checked_set = set()
@@ -89,13 +93,6 @@ class Transaction(object):
     def isLocked(self):
         return self._locked
 
-    def prepare(self, oid_list, user, desc, ext, packed):
-        """
-            Set the transaction informations
-        """
-        # assert self._transaction is not None
-        self._transaction = oid_list, user, desc, ext, packed, self._ttid
-
     def addObject(self, oid, data_id, value_serial):
         """
             Add an object to the transaction
@@ -121,9 +118,6 @@ class Transaction(object):
     def getLockedOIDList(self):
         return self._object_dict.keys() + list(self._checked_set)
 
-    def getTransactionInformations(self):
-        return self._transaction
-
 
 class TransactionManager(object):
     """
@@ -137,12 +131,6 @@ class TransactionManager(object):
         self._load_lock_dict = {}
         self._uuid_dict = {}
 
-    def __contains__(self, ttid):
-        """
-            Returns True if the TID is known by the manager
-        """
-        return ttid in self._transaction_dict
-
     def register(self, uuid, ttid):
         """
             Register a transaction, it may be already registered
@@ -174,7 +162,21 @@ class TransactionManager(object):
         self._load_lock_dict.clear()
         self._uuid_dict.clear()
 
-    def lock(self, ttid, tid, oid_list):
+    def vote(self, ttid, txn_info=None):
+        """
+            Store transaction information received from client node
+        """
+        logging.debug('Vote TXN %s', dump(ttid))
+        transaction = self._transaction_dict[ttid]
+        object_list = transaction.getObjectList()
+        if txn_info:
+            user, desc, ext, oid_list = txn_info
+            txn_info = oid_list, user, desc, ext, False, ttid
+            transaction.has_trans = True
+        # store metadata to temporary table
+        self._app.dm.storeTransaction(ttid, object_list, txn_info)
+
+    def lock(self, ttid, tid):
         """
             Lock a transaction
         """
@@ -182,43 +184,22 @@ class TransactionManager(object):
         transaction = self._transaction_dict[ttid]
         # remember that the transaction has been locked
         transaction.lock()
-        for oid in transaction.getOIDList():
-            self._load_lock_dict[oid] = ttid
-        # check every object that should be locked
-        uuid = transaction.getUUID()
-        is_assigned = self._app.pt.isAssigned
-        for oid in oid_list:
-            if is_assigned(oid, uuid) and \
-                    self._load_lock_dict.get(oid) != ttid:
-                raise ValueError, 'Some locks are not held'
-        object_list = transaction.getObjectList()
-        # txn_info is None is the transaction information is not stored on
-        # this storage.
-        txn_info = transaction.getTransactionInformations()
-        # store data from memory to temporary table
-        self._app.dm.storeTransaction(tid, object_list, txn_info)
-        # ...and remember its definitive TID
+        self._load_lock_dict.update(
+            dict.fromkeys(transaction.getOIDList(), ttid))
+        # commit transaction and remember its definitive TID
+        if transaction.has_trans:
+            self._app.dm.lockTransaction(tid, ttid)
         transaction.setTID(tid)
 
-    def getTIDFromTTID(self, ttid):
-        return self._transaction_dict[ttid].getTID()
-
     def unlock(self, ttid):
         """
             Unlock transaction
         """
-        logging.debug('Unlock TXN %s', dump(ttid))
-        self._app.dm.finishTransaction(self.getTIDFromTTID(ttid))
+        tid = self._transaction_dict[ttid].getTID()
+        logging.debug('Unlock TXN %s (ttid=%s)', dump(tid), dump(ttid))
+        self._app.dm.unlockTransaction(tid, ttid)
         self.abort(ttid, even_if_locked=True)
 
-    def storeTransaction(self, ttid, oid_list, user, desc, ext, packed):
-        """
-            Store transaction information received from client node
-        """
-        assert ttid in self, "Transaction not registered"
-        transaction = self._transaction_dict[ttid]
-        transaction.prepare(oid_list, user, desc, ext, packed)
-
     def getLockingTID(self, oid):
         return self._store_lock_dict.get(oid)
 
@@ -283,9 +264,11 @@ class TransactionManager(object):
         self._store_lock_dict[oid] = ttid
 
     def checkCurrentSerial(self, ttid, serial, oid):
+        try:
+            transaction = self._transaction_dict[ttid]
+        except KeyError:
+            raise NotRegisteredError
         self.lockObject(ttid, serial, oid, unlock=True)
-        assert ttid in self, "Transaction not registered"
-        transaction = self._transaction_dict[ttid]
         transaction.addCheckedObject(oid)
 
     def storeObject(self, ttid, serial, oid, compression, checksum, data,
@@ -293,14 +276,17 @@ class TransactionManager(object):
         """
             Store an object received from client node
         """
+        try:
+            transaction = self._transaction_dict[ttid]
+        except KeyError:
+            raise NotRegisteredError
         self.lockObject(ttid, serial, oid, unlock=unlock)
         # store object
-        assert ttid in self, "Transaction not registered"
         if data is None:
             data_id = None
         else:
             data_id = self._app.dm.holdData(checksum, data, compression)
-        self._transaction_dict[ttid].addObject(oid, data_id, value_serial)
+        transaction.addObject(oid, data_id, value_serial)
 
     def abort(self, ttid, even_if_locked=False):
         """
@@ -322,9 +308,7 @@ class TransactionManager(object):
             if not even_if_locked:
                 return
         else:
-            self._app.dm.releaseData([data_id
-                for oid, data_id, value_serial in transaction.getObjectList()
-                if data_id], True)
+            self._app.dm.abortTransaction(ttid)
         # unlock any object
         for oid in transaction.getLockedOIDList():
             if has_load_lock:

neo/tests/__init__.py

@@ -463,9 +463,6 @@ class NeoUnitTestBase(NeoTestBase):
     def checkAskTransactionInformation(self, conn, **kw):
         return self.checkAskPacket(conn, Packets.AskTransactionInformation, **kw)
 
-    def checkAskObjectPresent(self, conn, **kw):
-        return self.checkAskPacket(conn, Packets.AskObjectPresent, **kw)
-
     def checkAskObject(self, conn, **kw):
         return self.checkAskPacket(conn, Packets.AskObject, **kw)
 
@@ -514,18 +511,12 @@ class NeoUnitTestBase(NeoTestBase):
     def checkAnswerObjectHistory(self, conn, **kw):
         return self.checkAnswerPacket(conn, Packets.AnswerObjectHistory, **kw)
 
-    def checkAnswerStoreTransaction(self, conn, **kw):
-        return self.checkAnswerPacket(conn, Packets.AnswerStoreTransaction, **kw)
-
     def checkAnswerStoreObject(self, conn, **kw):
         return self.checkAnswerPacket(conn, Packets.AnswerStoreObject, **kw)
 
     def checkAnswerPartitionTable(self, conn, **kw):
         return self.checkAnswerPacket(conn, Packets.AnswerPartitionTable, **kw)
 
-    def checkAnswerObjectPresent(self, conn, **kw):
-        return self.checkAnswerPacket(conn, Packets.AnswerObjectPresent, **kw)
-
 
 class Patch(object):
 

neo/tests/storage/testClientHandler.py

@@ -191,18 +191,6 @@ class StorageClientHandlerTests(NeoUnitTestBase):
         self.operation.askObjectHistory(conn, oid2, 1, 2)
         self.checkAnswerObjectHistory(conn)
 
-    def test_askStoreTransaction(self):
-        conn = self._getConnection(uuid=self.getClientUUID())
-        tid = self.getNextTID()
-        user = 'USER'
-        desc = 'DESC'
-        ext = 'EXT'
-        oid_list = (self.getOID(1), self.getOID(2))
-        self.operation.askStoreTransaction(conn, tid, user, desc, ext, oid_list)
-        calls = self.app.tm.mockGetNamedCalls('storeTransaction')
-        self.assertEqual(len(calls), 1)
-        self.checkAnswerStoreTransaction(conn)
-
     def _getObject(self):
         oid = self.getOID(0)
         serial = self.getNextTID()

neo/tests/storage/testMasterHandler.py

@@ -112,50 +112,6 @@ class StorageMasterHandlerTests(NeoUnitTestBase):
     def _getConnection(self):
         return self.getFakeConnection()
 
-    def test_askLockInformation1(self):
-        """ Unknown transaction """
-        self.app.tm = Mock({'__contains__': False})
-        conn = self._getConnection()
-        oid_list = [self.getOID(1), self.getOID(2)]
-        tid = self.getNextTID()
-        ttid = self.getNextTID()
-        handler = self.operation
-        self.assertRaises(ProtocolError, handler.askLockInformation, conn,
-            ttid, tid, oid_list)
-
-    def test_askLockInformation2(self):
-        """ Lock transaction """
-        self.app.tm = Mock({'__contains__': True})
-        conn = self._getConnection()
-        tid = self.getNextTID()
-        ttid = self.getNextTID()
-        oid_list = [self.getOID(1), self.getOID(2)]
-        self.operation.askLockInformation(conn, ttid, tid, oid_list)
-        calls = self.app.tm.mockGetNamedCalls('lock')
-        self.assertEqual(len(calls), 1)
-        calls[0].checkArgs(ttid, tid, oid_list)
-        self.checkAnswerInformationLocked(conn)
-
-    def test_notifyUnlockInformation1(self):
-        """ Unknown transaction """
-        self.app.tm = Mock({'__contains__': False})
-        conn = self._getConnection()
-        tid = self.getNextTID()
-        handler = self.operation
-        self.assertRaises(ProtocolError, handler.notifyUnlockInformation,
-                conn, tid)
-
-    def test_notifyUnlockInformation2(self):
-        """ Unlock transaction """
-        self.app.tm = Mock({'__contains__': True})
-        conn = self._getConnection()
-        tid = self.getNextTID()
-        self.operation.notifyUnlockInformation(conn, tid)
-        calls = self.app.tm.mockGetNamedCalls('unlock')
-        self.assertEqual(len(calls), 1)
-        calls[0].checkArgs(tid)
-        self.checkNoPacketSent(conn)
-
     def test_askPack(self):
         self.app.dm = Mock({'pack': None})
         conn = self.getFakeConnection()

neo/tests/storage/testVerificationHandler.py

-#
-# Copyright (C) 2009-2015  Nexedi SA
-#
-# This program is free software; you can redistribute it and/or
-# modify it under the terms of the GNU General Public License
-# as published by the Free Software Foundation; either version 2
-# of the License, or (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program.  If not, see <http://www.gnu.org/licenses/>.
-
-import unittest
-from mock import Mock
-from .. import NeoUnitTestBase
-from neo.lib.pt import PartitionTable
-from neo.storage.app import Application
-from neo.storage.handlers.verification import VerificationHandler
-from neo.lib.protocol import CellStates, ErrorCodes
-from neo.lib.exception import PrimaryFailure
-from neo.lib.util import p64, u64
-
-class StorageVerificationHandlerTests(NeoUnitTestBase):
-
-    def setUp(self):
-        NeoUnitTestBase.setUp(self)
-        self.prepareDatabase(number=1)
-        # create an application object
-        config = self.getStorageConfiguration(master_number=1)
-        self.app = Application(config)
-        self.verification = VerificationHandler(self.app)
-        # define some variable to simulate client and storage node
-        self.master_port = 10010
-        self.storage_port = 10020
-        self.client_port = 11011
-        self.num_partitions = 1009
-        self.num_replicas = 2
-        self.app.operational = False
-        self.app.load_lock_dict = {}
-        self.app.pt = PartitionTable(self.num_partitions, self.num_replicas)
-
-    def _tearDown(self, success):
-        self.app.close()
-        del self.app
-        super(StorageVerificationHandlerTests, self)._tearDown(success)
-
-    # Common methods
-    def getMasterConnection(self):
-        return self.getFakeConnection(address=("127.0.0.1", self.master_port))
-
-    # Tests
-    def test_03_connectionClosed(self):
-        conn = self.getMasterConnection()
-        self.app.listening_conn = object() # mark as running
-        self.assertRaises(PrimaryFailure, self.verification.connectionClosed, conn,)
-        # nothing happens
-        self.checkNoPacketSent(conn)
-
-    def test_08_askPartitionTable(self):
-        node = self.app.nm.createStorage(
-            address=("127.7.9.9", 1),
-            uuid=self.getStorageUUID()
-        )
-        self.app.pt.setCell(1, node, CellStates.UP_TO_DATE)
-        self.assertTrue(self.app.pt.hasOffset(1))
-        conn = self.getMasterConnection()
-        self.verification.askPartitionTable(conn)
-        ptid, row_list = self.checkAnswerPartitionTable(conn, decode=True)
-        self.assertEqual(len(row_list), 1009)
-
-    def test_10_notifyPartitionChanges(self):
-        # old partition change
-        conn = self.getMasterConnection()
-        self.verification.notifyPartitionChanges(conn, 1, ())
-        self.verification.notifyPartitionChanges(conn, 0, ())
-        self.assertEqual(self.app.pt.getID(), 1)
-
-        # new node
-        conn = self.getMasterConnection()
-        new_uuid = self.getStorageUUID()
-        cell = (0, new_uuid, CellStates.UP_TO_DATE)
-        self.app.nm.createStorage(uuid=new_uuid)
-        self.app.pt = PartitionTable(1, 1)
-        self.app.dm = Mock({ })
-        ptid = self.getPTID()
-        # pt updated
-        self.verification.notifyPartitionChanges(conn, ptid, (cell, ))
-        # check db update
-        calls = self.app.dm.mockGetNamedCalls('changePartitionTable')
-        self.assertEqual(len(calls), 1)
-        self.assertEqual(calls[0].getParam(0), ptid)
-        self.assertEqual(calls[0].getParam(1), (cell, ))
-
-    def test_13_askUnfinishedTransactions(self):
-        # client connection with no data
-        self.app.dm = Mock({
-            'getUnfinishedTIDList': [],
-        })
-        conn = self.getMasterConnection()
-        self.verification.askUnfinishedTransactions(conn)
-        (max_tid, tid_list) = self.checkAnswerUnfinishedTransactions(conn, decode=True)
-        self.assertEqual(len(tid_list), 0)
-        call_list = self.app.dm.mockGetNamedCalls('getUnfinishedTIDList')
-        self.assertEqual(len(call_list), 1)
-        call_list[0].checkArgs()
-
-        # client connection with some data
-        self.app.dm = Mock({
-            'getUnfinishedTIDList': [p64(4)],
-        })
-        conn = self.getMasterConnection()
-        self.verification.askUnfinishedTransactions(conn)
-        (max_tid, tid_list) = self.checkAnswerUnfinishedTransactions(conn, decode=True)
-        self.assertEqual(len(tid_list), 1)
-        self.assertEqual(u64(tid_list[0]), 4)
-
-    def test_14_askTransactionInformation(self):
-        # ask from client conn with no data
-        self.app.dm = Mock({
-            'getTransaction': None,
-        })
-        conn = self.getMasterConnection()
-        tid = p64(1)
-        self.verification.askTransactionInformation(conn, tid)
-        code, message = self.checkErrorPacket(conn, decode=True)
-        self.assertEqual(code, ErrorCodes.TID_NOT_FOUND)
-        call_list = self.app.dm.mockGetNamedCalls('getTransaction')
-        self.assertEqual(len(call_list), 1)
-        call_list[0].checkArgs(tid, all=True)
-
-        # input some tmp data and ask from client, must find both transaction
-        self.app.dm = Mock({
-            'getTransaction': ([p64(2)], 'u2', 'd2', 'e2', False),
-        })
-        conn = self.getMasterConnection()
-        self.verification.askTransactionInformation(conn, p64(1))
-        tid, user, desc, ext, packed, oid_list = self.checkAnswerTransactionInformation(conn, decode=True)
-        self.assertEqual(u64(tid), 1)
-        self.assertEqual(user, 'u2')
-        self.assertEqual(desc, 'd2')
-        self.assertEqual(ext, 'e2')
-        self.assertFalse(packed)
-        self.assertEqual(len(oid_list), 1)
-        self.assertEqual(u64(oid_list[0]), 2)
-
-    def test_15_askObjectPresent(self):
-        # client connection with no data
-        self.app.dm = Mock({
-            'objectPresent': False,
-        })
-        conn = self.getMasterConnection()
-        oid, tid = p64(1), p64(2)
-        self.verification.askObjectPresent(conn, oid, tid)
-        code, message = self.checkErrorPacket(conn, decode=True)
-        self.assertEqual(code, ErrorCodes.OID_NOT_FOUND)
-        call_list = self.app.dm.mockGetNamedCalls('objectPresent')
-        self.assertEqual(len(call_list), 1)
-        call_list[0].checkArgs(oid, tid)
-
-        # client connection with some data
-        self.app.dm = Mock({
-            'objectPresent': True,
-        })
-        conn = self.getMasterConnection()
-        self.verification.askObjectPresent(conn, oid, tid)
-        oid, tid = self.checkAnswerObjectPresent(conn, decode=True)
-        self.assertEqual(u64(tid), 2)
-        self.assertEqual(u64(oid), 1)
-
-    def test_16_deleteTransaction(self):
-        # client connection with no data
-        self.app.dm = Mock({
-            'deleteTransaction': None,
-        })
-        conn = self.getMasterConnection()
-        oid_list = [self.getOID(1), self.getOID(2)]
-        tid = p64(1)
-        self.verification.deleteTransaction(conn, tid, oid_list)
-        call_list = self.app.dm.mockGetNamedCalls('deleteTransaction')
-        self.assertEqual(len(call_list), 1)
-        call_list[0].checkArgs(tid, oid_list)
-
-    def test_17_commitTransaction(self):
-        # commit a transaction
-        conn = self.getMasterConnection()
-        dm = Mock()
-        self.app.dm = dm
-        self.verification.commitTransaction(conn, p64(1))
-        self.assertEqual(len(dm.mockGetNamedCalls("finishTransaction")), 1)
-        call = dm.mockGetNamedCalls("finishTransaction")[0]
-        tid = call.getParam(0)
-        self.assertEqual(u64(tid), 1)
-
-if __name__ == "__main__":
-    unittest.main()
-

neo/tests/threaded/test.py

@@ -21,7 +21,7 @@ import transaction
 import unittest
 from thread import get_ident
 from zlib import compress
-from persistent import Persistent
+from persistent import Persistent, GHOST
 from ZODB import DB, POSException
 from neo.storage.transactions import TransactionManager, \
     DelayedError, ConflictError
@@ -398,47 +398,62 @@ class Test(NEOThreadedTest):
         """ Verification step should commit locked transactions """
         def delayUnlockInformation(conn, packet):
             return isinstance(packet, Packets.NotifyUnlockInformation)
-        def onStoreTransaction(storage, die=False):
-            def storeTransaction(orig, *args, **kw):
-                orig(*args, **kw)
+        def onLockTransaction(storage, die=False):
+            def lock(orig, *args, **kw):
                 if die:
                     sys.exit()
+                orig(*args, **kw)
                 storage.master_conn.close()
-            return Patch(storage.dm, storeTransaction=storeTransaction)
+            return Patch(storage.tm, lock=lock)
         cluster = NEOCluster(partitions=2, storage_count=2)
         try:
             cluster.start()
             s0, s1 = cluster.sortStorageList()
             t, c = cluster.getTransaction()
             r = c.root()
-            r[0] = x = PCounter()
+            r[0] = PCounter()
             tids = [r._p_serial]
-            t.commit()
-            tids.append(r._p_serial)
-            r[1] = PCounter()
-            with onStoreTransaction(s0), onStoreTransaction(s1):
+            with onLockTransaction(s0), onLockTransaction(s1):
                 self.assertRaises(ConnectionClosed, t.commit)
+            self.assertEqual(r._p_state, GHOST)
             self.tic()
             t.begin()
-            y = r[1]
-            self.assertEqual(y.value, 0)
-            assert [u64(o._p_oid) for o in (r, x, y)] == range(3)
-            r[2] = 'ok'
-            with cluster.master.filterConnection(s0) as m2s, \
-                 cluster.moduloTID(1):
-                m2s.add(delayUnlockInformation)
-                t.commit()
-                x.value = 1
-                # s0 will accept to store y (because it's not locked) but will
-                # never lock the transaction (packets from master delayed),
-                # so the last transaction will be dropped.
-                y.value = 2
-                with onStoreTransaction(s1, die=True):
+            x = r[0]
+            self.assertEqual(x.value, 0)
+            cluster.master.tm._last_oid = x._p_oid
+            tids.append(r._p_serial)
+            r[1] = PCounter()
+            c.readCurrent(x)
+            with cluster.moduloTID(1):
+                with onLockTransaction(s0), onLockTransaction(s1):
                     self.assertRaises(ConnectionClosed, t.commit)
+                self.tic()
+                t.begin()
+                # The following line checks that s1 moved the transaction
+                # metadata to final place during the verification phase.
+                # If it didn't, a NEOStorageError would be raised.
+                self.assertEqual(3, len(c.db().history(r._p_oid, 4)))
+                y = r[1]
+                self.assertEqual(y.value, 0)
+                self.assertEqual([u64(o._p_oid) for o in (r, x, y)], range(3))
+                r[2] = 'ok'
+                with cluster.master.filterConnection(s0) as m2s:
+                    m2s.add(delayUnlockInformation)
+                    t.commit()
+                    x.value = 1
+                    # s0 will accept to store y (because it's not locked) but will
+                    # never lock the transaction (packets from master delayed),
+                    # so the last transaction will be dropped.
+                    y.value = 2
+                    di0 = s0.getDataLockInfo()
+                    with onLockTransaction(s1, die=True):
+                        self.assertRaises(ConnectionClosed, t.commit)
         finally:
             cluster.stop()
         cluster.reset()
-        di0 = s0.getDataLockInfo()
+        (k, v), = set(s0.getDataLockInfo().iteritems()
+                      ).difference(di0.iteritems())
+        self.assertEqual(v, 1)
         k, = (k for k, v in di0.iteritems() if v == 1)
         di0[k] = 0 # r[2] = 'ok'
         self.assertEqual(di0.values(), [0, 0, 0, 0, 0])
@@ -458,6 +473,29 @@ class Test(NEOThreadedTest):
         finally:
             cluster.stop()
 
+    def testDropUnfinishedData(self):
+        def lock(orig, *args, **kw):
+            orig(*args, **kw)
+            storage.master_conn.close()
+        r = []
+        def dropUnfinishedData(orig):
+            r.append(len(orig.__self__.getUnfinishedTIDDict()))
+            orig()
+            r.append(len(orig.__self__.getUnfinishedTIDDict()))
+        cluster = NEOCluster(partitions=2, storage_count=2, replicas=1)
+        try:
+            cluster.start()
+            t, c = cluster.getTransaction()
+            c.root()._p_changed = 1
+            storage = cluster.storage_list[0]
+            with Patch(storage.tm, lock=lock), \
+                 Patch(storage.dm, dropUnfinishedData=dropUnfinishedData):
+                t.commit()
+                self.tic()
+            self.assertEqual(r, [1, 0])
+        finally:
+            cluster.stop()
+
     def testStorageReconnectDuringStore(self):
         cluster = NEOCluster(replicas=1)
         try:
@@ -908,5 +946,27 @@ class Test(NEOThreadedTest):
             cluster.stop()
             del cluster.startCluster
 
+    def testAbortVotedTransaction(self):
+        r = []
+        def tpc_finish(*args, **kw):
+            for storage in cluster.storage_list:
+                r.append(len(storage.dm.getUnfinishedTIDDict()))
+            raise NEOStorageError
+        cluster = NEOCluster(storage_count=2, partitions=2)
+        try:
+            cluster.start()
+            t, c = cluster.getTransaction()
+            c.root()['x'] = PCounter()
+            with Patch(cluster.client, tpc_finish=tpc_finish):
+                self.assertRaises(NEOStorageError, t.commit)
+                self.tic()
+            self.assertEqual(r, [1, 1])
+            for storage in cluster.storage_list:
+                self.assertFalse(storage.dm.getUnfinishedTIDDict())
+            t.begin()
+            self.assertNotIn('x', c.root())
+        finally:
+            cluster.stop()
+
 if __name__ == "__main__":
     unittest.main()