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Gwenaël Samain
cython
Commits
06c0c96b
Commit
06c0c96b
authored
Jan 22, 2012
by
Mark Florisson
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Fix segfault caused by NULL suboffsets
parent
f5134ba8
Changes
3
Show whitespace changes
Inline
Side-by-side
Showing
3 changed files
with
36 additions
and
20 deletions
+36
-20
Cython/Compiler/MemoryView.py
Cython/Compiler/MemoryView.py
+14
-10
Cython/Utility/MemoryView.pyx
Cython/Utility/MemoryView.pyx
+13
-4
tests/run/numpy_memoryview.pyx
tests/run/numpy_memoryview.pyx
+9
-6
No files found.
Cython/Compiler/MemoryView.py
View file @
06c0c96b
...
@@ -471,7 +471,10 @@ def assign_scalar(dst, scalar, code):
...
@@ -471,7 +471,10 @@ def assign_scalar(dst, scalar, code):
code
.
putln
(
"%s __pyx_temp_slice = %s;"
%
(
slice_decl
,
dst
.
result
()))
code
.
putln
(
"%s __pyx_temp_slice = %s;"
%
(
slice_decl
,
dst
.
result
()))
dst_temp
=
"__pyx_temp_slice"
dst_temp
=
"__pyx_temp_slice"
with
slice_iter
(
dst
.
type
,
dst_temp
,
dst
.
type
.
ndim
,
code
)
as
p
:
# with slice_iter(dst.type, dst_temp, dst.type.ndim, code) as p:
slice_iter_obj
=
slice_iter
(
dst
.
type
,
dst_temp
,
dst
.
type
.
ndim
,
code
)
p
=
slice_iter_obj
.
start_loops
()
if
dtype
.
is_pyobject
:
if
dtype
.
is_pyobject
:
code
.
putln
(
"Py_DECREF((PyObject *) %s);"
%
p
)
code
.
putln
(
"Py_DECREF((PyObject *) %s);"
%
p
)
...
@@ -480,6 +483,7 @@ def assign_scalar(dst, scalar, code):
...
@@ -480,6 +483,7 @@ def assign_scalar(dst, scalar, code):
if
dtype
.
is_pyobject
:
if
dtype
.
is_pyobject
:
code
.
putln
(
"Py_INCREF(__pyx_temp_scalar);"
)
code
.
putln
(
"Py_INCREF(__pyx_temp_scalar);"
)
slice_iter_obj
.
end_loops
()
code
.
end_block
()
code
.
end_block
()
def
slice_iter
(
slice_type
,
slice_temp
,
ndim
,
code
):
def
slice_iter
(
slice_type
,
slice_temp
,
ndim
,
code
):
...
@@ -496,7 +500,7 @@ class SliceIter(object):
...
@@ -496,7 +500,7 @@ class SliceIter(object):
self
.
ndim
=
ndim
self
.
ndim
=
ndim
class
ContigSliceIter
(
SliceIter
):
class
ContigSliceIter
(
SliceIter
):
def
__enter__
(
self
):
def
start_loops
(
self
):
code
=
self
.
code
code
=
self
.
code
code
.
begin_block
()
code
.
begin_block
()
...
@@ -514,13 +518,13 @@ class ContigSliceIter(SliceIter):
...
@@ -514,13 +518,13 @@ class ContigSliceIter(SliceIter):
return
"__pyx_temp_pointer"
return
"__pyx_temp_pointer"
def
__exit__
(
self
,
*
args
):
def
end_loops
(
self
):
self
.
code
.
putln
(
"__pyx_temp_pointer += 1;"
)
self
.
code
.
putln
(
"__pyx_temp_pointer += 1;"
)
self
.
code
.
putln
(
"}"
)
self
.
code
.
putln
(
"}"
)
self
.
code
.
end_block
()
self
.
code
.
end_block
()
class
StridedSliceIter
(
SliceIter
):
class
StridedSliceIter
(
SliceIter
):
def
__enter__
(
self
):
def
start_loops
(
self
):
code
=
self
.
code
code
=
self
.
code
code
.
begin_block
()
code
.
begin_block
()
...
@@ -543,7 +547,7 @@ class StridedSliceIter(SliceIter):
...
@@ -543,7 +547,7 @@ class StridedSliceIter(SliceIter):
return
"__pyx_temp_pointer_%d"
%
(
self
.
ndim
-
1
)
return
"__pyx_temp_pointer_%d"
%
(
self
.
ndim
-
1
)
def
__exit__
(
self
,
*
args
):
def
end_loops
(
self
):
code
=
self
.
code
code
=
self
.
code
for
i
in
range
(
self
.
ndim
-
1
,
-
1
,
-
1
):
for
i
in
range
(
self
.
ndim
-
1
,
-
1
,
-
1
):
code
.
putln
(
"__pyx_temp_pointer_%d += __pyx_temp_stride_%d;"
%
(
i
,
i
))
code
.
putln
(
"__pyx_temp_pointer_%d += __pyx_temp_stride_%d;"
%
(
i
,
i
))
...
...
Cython/Utility/MemoryView.pyx
View file @
06c0c96b
...
@@ -403,6 +403,7 @@ cdef class memoryview(object):
...
@@ -403,6 +403,7 @@ cdef class memoryview(object):
# It would be easy to support indirect dimensions, but it's easier
# It would be easy to support indirect dimensions, but it's easier
# to disallow :)
# to disallow :)
if
self
.
view
.
suboffsets
!=
NULL
:
assert_direct_dimensions
(
self
.
view
.
suboffsets
,
self
.
view
.
ndim
)
assert_direct_dimensions
(
self
.
view
.
suboffsets
,
self
.
view
.
ndim
)
slice_assign_scalar
(
dst_slice
,
self
.
view
.
ndim
,
self
.
view
.
itemsize
,
slice_assign_scalar
(
dst_slice
,
self
.
view
.
ndim
,
self
.
view
.
itemsize
,
item
,
self
.
dtype_is_object
)
item
,
self
.
dtype_is_object
)
...
@@ -973,14 +974,22 @@ cdef {{memviewslice_name}} *get_slice_from_memview(memoryview memview,
...
@@ -973,14 +974,22 @@ cdef {{memviewslice_name}} *get_slice_from_memview(memoryview memview,
@
cname
(
'__pyx_memoryview_slice_copy'
)
@
cname
(
'__pyx_memoryview_slice_copy'
)
cdef
void
slice_copy
(
memoryview
memview
,
{{
memviewslice_name
}}
*
dst
):
cdef
void
slice_copy
(
memoryview
memview
,
{{
memviewslice_name
}}
*
dst
):
cdef
int
dim
cdef
int
dim
cdef
Py_ssize_t
*
shape
,
*
strides
,
*
suboffsets
shape
=
memview
.
view
.
shape
strides
=
memview
.
view
.
strides
suboffsets
=
memview
.
view
.
suboffsets
dst
.
memview
=
<
__pyx_memoryview
*>
memview
dst
.
memview
=
<
__pyx_memoryview
*>
memview
dst
.
data
=
<
char
*>
memview
.
view
.
buf
dst
.
data
=
<
char
*>
memview
.
view
.
buf
for
dim
in
range
(
memview
.
view
.
ndim
):
for
dim
in
range
(
memview
.
view
.
ndim
):
dst
.
shape
[
dim
]
=
memview
.
view
.
shape
[
dim
]
dst
.
shape
[
dim
]
=
shape
[
dim
]
dst
.
strides
[
dim
]
=
memview
.
view
.
strides
[
dim
]
dst
.
strides
[
dim
]
=
strides
[
dim
]
dst
.
suboffsets
[
dim
]
=
memview
.
view
.
suboffsets
[
dim
]
if
suboffsets
==
NULL
:
dst
.
suboffsets
[
dim
]
=
-
1
else
:
dst
.
suboffsets
[
dim
]
=
suboffsets
[
dim
]
@
cname
(
'__pyx_memoryview_copy_object'
)
@
cname
(
'__pyx_memoryview_copy_object'
)
cdef
memoryview_copy
(
memoryview
memview
):
cdef
memoryview_copy
(
memoryview
memview
):
...
...
tests/run/numpy_memoryview.pyx
View file @
06c0c96b
...
@@ -189,20 +189,23 @@ def test_transpose():
...
@@ -189,20 +189,23 @@ def test_transpose():
print
a
[
3
,
2
],
a
.
T
[
2
,
3
],
a_obj
[
3
,
2
],
a_obj
.
T
[
2
,
3
],
numpy_obj
[
3
,
2
],
numpy_obj
.
T
[
2
,
3
]
print
a
[
3
,
2
],
a
.
T
[
2
,
3
],
a_obj
[
3
,
2
],
a_obj
.
T
[
2
,
3
],
numpy_obj
[
3
,
2
],
numpy_obj
.
T
[
2
,
3
]
@
testcase
@
testcase
_numpy_1_5
def
test_numpy_like_attributes
(
cyarray
):
def
test_numpy_like_attributes
(
cyarray
):
"""
"""
For some reason this fails in numpy 1.4, with shape () and strides (40, 8)
instead of 20, 4 on my machine. Investigate this.
>>> cyarray = create_array(shape=(8, 5), mode="c")
>>> cyarray = create_array(shape=(8, 5), mode="c")
>>> test_numpy_like_attributes(cyarray)
>>> test_numpy_like_attributes(cyarray)
>>> test_numpy_like_attributes(cyarray.memview)
>>> test_numpy_like_attributes(cyarray.memview)
"""
"""
numarray
=
np
.
asarray
(
cyarray
)
numarray
=
np
.
asarray
(
cyarray
)
assert
cyarray
.
shape
==
numarray
.
shape
assert
cyarray
.
shape
==
numarray
.
shape
,
(
cyarray
.
shape
,
numarray
.
shape
)
assert
cyarray
.
strides
==
numarray
.
strides
assert
cyarray
.
strides
==
numarray
.
strides
,
(
cyarray
.
strides
,
numarray
.
strides
)
assert
cyarray
.
ndim
==
numarray
.
ndim
assert
cyarray
.
ndim
==
numarray
.
ndim
,
(
cyarray
.
ndim
,
numarray
.
ndim
)
assert
cyarray
.
size
==
numarray
.
size
assert
cyarray
.
size
==
numarray
.
size
,
(
cyarray
.
size
,
numarray
.
size
)
assert
cyarray
.
nbytes
==
numarray
.
nbytes
assert
cyarray
.
nbytes
==
numarray
.
nbytes
,
(
cyarray
.
nbytes
,
numarray
.
nbytes
)
cdef
int
[:,
:]
mslice
=
numarray
cdef
int
[:,
:]
mslice
=
numarray
assert
(
<
object
>
mslice
).
base
is
numarray
assert
(
<
object
>
mslice
).
base
is
numarray
...
...
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