Commit 09022d0a authored by Xavier Thompson's avatar Xavier Thompson

Jupyter with Cython+

See merge request !880
parents 78b23c0d a26a4409
[buildout] [buildout]
extends = extends =
../../stack/slapos.cfg ../defaults.cfg
../../component/numpy/buildout.cfg ../git/buildout.cfg
../numpy/buildout.cfg
parts = parts = cythonplus_env.sh
slapos-cookbook
template [gcc]
min_version = 8.4
[python] [python]
part = python3 part = python3
[template] # Dependencies for the Cython+ test suite
recipe = slapos.recipe.template:jinja2
rendered = ${buildout:directory}/template.cfg
template =
inline:[buildout]
eggs-directory = ${buildout:eggs-directory}
develop-eggs-directory = ${buildout:develop-eggs-directory}
parts = runTestSuite
[slap-configuration]
recipe = slapos.cookbook:slapconfiguration.serialised
computer = $${slap-connection:computer-id}
partition = $${slap-connection:partition-id}
url = $${slap-connection:server-url}
key = $${slap-connection:key-file}
cert = $${slap-connection:cert-file}
[directory]
recipe = slapos.cookbook:mkdirectory
bin = $${buildout:directory}/bin
tmp = $${buildout:directory}/tmp
[runTestSuite]
recipe = slapos.recipe.template:jinja2
rendered = $${directory:bin}/$${:_buildout_section_name_}
template = ${runTestSuite.in:target}
mode = 0755
context =
key tmpdir directory:tmp
key slapparameter_dict slap-configuration:configuration
key cython_repository cython-repository:location
raw runTestSuite_py ${runTestSuite_py:bin-directory}/${runTestSuite_py:interpreter}
raw cython_env_sh ${cython_env.sh:rendered}
[cython-repository]
recipe = slapos.recipe.build:gitclone
repository = ${cython-repository:location}
git-executable = ${git:location}/bin/git
shared = true
[cython-repository]
recipe = slapos.recipe.build:gitclone
repository = https://lab.nexedi.com/nexedi/cython.git
git-executable = ${git:location}/bin/git
sparse-checkout = /.gitignore
[runTestSuite.in]
recipe = slapos.recipe.build:download
url = ${:_profile_base_location_}/${:_buildout_section_name_}
md5sum = 02094e80cde9631081077fc96b401065
[runTestSuite_py]
recipe = zc.recipe.egg
eggs = erp5.util
interpreter = ${:_buildout_section_name_}
[eggs] [eggs]
recipe = zc.recipe.egg recipe = zc.recipe.egg
eggs = eggs =
...@@ -73,7 +20,13 @@ eggs = ...@@ -73,7 +20,13 @@ eggs =
coverage coverage
pycodestyle pycodestyle
[cython_env.sh] [cythonplus-repository]
recipe = slapos.recipe.build:gitclone
repository = https://lab.nexedi.com/nexedi/cython.git
revision = cythonplus-0.1
git-executable = ${git:location}/bin/git
[cythonplus_env.sh]
recipe = slapos.recipe.template:jinja2 recipe = slapos.recipe.template:jinja2
rendered = ${buildout:directory}/${:_buildout_section_name_} rendered = ${buildout:directory}/${:_buildout_section_name_}
template = template =
...@@ -81,19 +34,20 @@ template = ...@@ -81,19 +34,20 @@ template =
{% if 'part' in gcc -%} {% if 'part' in gcc -%}
{% set path = path + ':' + gcc.prefix + '/bin' -%} {% set path = path + ':' + gcc.prefix + '/bin' -%}
{% endif -%} {% endif -%}
export PATH={{ path }}:$PATH export PATH={{ path }}$${PATH:+:$PATH}
export PYTHON={{ python }} export PYTHON={{ python }}
export PYTHONPATH={{ cythonplus_repository }}$${PYTHONPATH:+:$PYTHONPATH}
export PYTHONPATH={{ ':'.join(easy_install.working_set(eggs['eggs'].split(), [ export PYTHONPATH={{ ':'.join(easy_install.working_set(eggs['eggs'].split(), [
eggs['develop-eggs-directory'], eggs['develop-eggs-directory'],
eggs['eggs-directory'], eggs['eggs-directory'],
]).entries) }}$${PYTHONPATH:+:$PYTHONPATH} ]).entries) }}$${PYTHONPATH:+:$PYTHONPATH}
# EmbedTest needs libintl. {# Set path to libintl needed for cython EmbedTest #}
export LD_RUN_PATH={{ gettext }}/lib$${LD_RUN_PATH:+:$LD_RUN_PATH} export LD_RUN_PATH={{ gettext }}/lib$${LD_RUN_PATH:+:$LD_RUN_PATH}
export LIBRARY_PATH={{ gettext }}/lib$${LIBRARY_PATH:+:$LIBRARY_PATH} export LIBRARY_PATH={{ gettext }}/lib$${LIBRARY_PATH:+:$LIBRARY_PATH}
{##}
context = context =
section eggs eggs section eggs eggs
section gcc gcc section gcc gcc
key cythonplus_repository cythonplus-repository:location
key gettext gettext:location key gettext gettext:location
key python python:executable key python python:executable
import os os import os os
......
...@@ -71,6 +71,11 @@ patches = ...@@ -71,6 +71,11 @@ patches =
version = 8.4.0 version = 8.4.0
md5sum = bb815a8e3b7be43c4a26fa89dbbd9795 md5sum = bb815a8e3b7be43c4a26fa89dbbd9795
[gcc-10.2]
<= gcc-common
version = 10.2.0
md5sum = e9fd9b1789155ad09bcf3ae747596b50
[gcc-minimal] [gcc-minimal]
<= gcc-5.5 <= gcc-5.5
configure-options = configure-options =
......
[instance.cfg]
filename = instance.cfg.in
md5sum = a24384487467a07e827edab17a0b7206
[runTestSuite.in]
_update_hash_filename_ = runTestSuite.in
md5sum = 21a8a202b14475707c414056ba393b3d
[buildout]
parts =
publish-env-path
runTestSuite
eggs-directory = ${buildout:eggs-directory}
develop-eggs-directory = ${buildout:develop-eggs-directory}
[publish-env-path]
recipe = slapos.cookbook:publish
readme = Source the script to set up the environment.
script = ${cythonplus_env.sh:rendered}
repository = ${cythonplus-repository:repository}
[slap-configuration]
recipe = slapos.cookbook:slapconfiguration.serialised
computer = $${slap-connection:computer-id}
partition = $${slap-connection:partition-id}
url = $${slap-connection:server-url}
key = $${slap-connection:key-file}
cert = $${slap-connection:cert-file}
[directory]
recipe = slapos.cookbook:mkdirectory
bin = $${buildout:directory}/bin
tmp = $${buildout:directory}/tmp
[cythonplus-repository]
recipe = slapos.recipe.build:gitclone
repository = ${cythonplus-repository:location}
git-executable = ${git:location}/bin/git
shared = true
[runTestSuite]
recipe = slapos.recipe.template:jinja2
rendered = $${directory:bin}/$${:_buildout_section_name_}
template = ${runTestSuite.in:target}
mode = 0755
context =
key tmpdir directory:tmp
key slapparameter_dict slap-configuration:configuration
key cythonplus_repository cythonplus-repository:location
raw runTestSuite_interpreter ${runTestSuite_interpreter:bin-directory}/${runTestSuite_interpreter:interpreter}
raw cythonplus_env_sh ${cythonplus_env.sh:rendered}
#!{{ runTestSuite_py }} #!{{ runTestSuite_interpreter }}
""" """
Script to run the Cython test suite using Nexedi's test node framework. Script to run the Cython test suite using Nexedi's test node framework.
""" """
...@@ -9,7 +9,7 @@ from erp5.util import taskdistribution, testsuite ...@@ -9,7 +9,7 @@ from erp5.util import taskdistribution, testsuite
os.environ['TEMP'] = {{ repr(tmpdir) }} os.environ['TEMP'] = {{ repr(tmpdir) }}
command = """. {{ cython_env_sh }} command = """. {{ cythonplus_env_sh }}
make all test make all test
""" """
...@@ -96,7 +96,7 @@ def main(): ...@@ -96,7 +96,7 @@ def main():
with open(os.devnull) as stdin: with open(os.devnull) as stdin:
p = subprocess.Popen(command, shell=True, stdin=stdin, p = subprocess.Popen(command, shell=True, stdin=stdin,
stdout=subprocess.PIPE, stderr=subprocess.PIPE, stdout=subprocess.PIPE, stderr=subprocess.PIPE,
cwd={{repr(cython_repository)}}) cwd={{ repr(cythonplus_repository) }})
except Exception: except Exception:
end = time() end = time()
stderr = traceback.format_exc() stderr = traceback.format_exc()
......
[buildout]
extends =
buildout.hash.cfg
../../stack/slapos.cfg
../../component/cythonplus/buildout.cfg
parts =
slapos-cookbook
instance.cfg
[instance.cfg]
recipe = slapos.recipe.template
output = ${buildout:directory}/${:_buildout_section_name_}
url = ${:_profile_base_location_}/${:filename}
[runTestSuite.in]
recipe = slapos.recipe.build:download
url = ${:_profile_base_location_}/${:_update_hash_filename_}
[runTestSuite_interpreter]
recipe = zc.recipe.egg
eggs = erp5.util
interpreter = ${:_buildout_section_name_}
[versions]
slapos.recipe.template = 4.4
...@@ -15,11 +15,11 @@ ...@@ -15,11 +15,11 @@
[instance-jupyter-notebook] [instance-jupyter-notebook]
filename = instance.cfg.in filename = instance.cfg.in
md5sum = 1d5fe6cc4e48672ae7be1c223794a932 md5sum = 659e0d583acd70ebb8d815c22735d91b
[jupyter-notebook-config] [jupyter-notebook-config]
filename = jupyter_notebook_config.py.jinja filename = jupyter_notebook_config.py.jinja
md5sum = 3da50c37760a42e42ae3f9d78d9ca449 md5sum = 4514df152740dbd7990da9705f40e978
[jupyter-set-password] [jupyter-set-password]
filename = jupyter_set_password.cgi.jinja filename = jupyter_set_password.cgi.jinja
......
...@@ -82,6 +82,8 @@ rendered = ${directory:jupyter_config_dir}/jupyter_notebook_config.py ...@@ -82,6 +82,8 @@ rendered = ${directory:jupyter_config_dir}/jupyter_notebook_config.py
mode = 0744 mode = 0744
context = context =
raw config_cfg ${buildout:directory}/knowledge0.cfg raw config_cfg ${buildout:directory}/knowledge0.cfg
raw gcc_location {{ gcc_location }}
raw cythonplus_repository {{ cythonplus_repository }}
[directory] [directory]
recipe = slapos.cookbook:mkdirectory recipe = slapos.cookbook:mkdirectory
......
...@@ -36,3 +36,6 @@ c.NotebookApp.password = passwd(parser.get("jupyter_notebook", "password")) ...@@ -36,3 +36,6 @@ c.NotebookApp.password = passwd(parser.get("jupyter_notebook", "password"))
with open(knowledge_0, 'w') as file: with open(knowledge_0, 'w') as file:
parser.write(file) parser.write(file)
os.environ['PATH'] = "{{ gcc_location }}/bin" + os.pathsep + os.environ['PATH']
os.environ['PYTHONPATH'] = "{{ cythonplus_repository }}" + os.pathsep + os.environ['PYTHONPATH']
...@@ -2,6 +2,7 @@ ...@@ -2,6 +2,7 @@
extends = extends =
buildout.hash.cfg buildout.hash.cfg
../../stack/slapos.cfg ../../stack/slapos.cfg
../../component/cythonplus/buildout.cfg
../../component/openssl/buildout.cfg ../../component/openssl/buildout.cfg
../../component/jupyter/buildout.cfg ../../component/jupyter/buildout.cfg
../../stack/monitor/buildout.cfg ../../stack/monitor/buildout.cfg
...@@ -64,6 +65,8 @@ context = ...@@ -64,6 +65,8 @@ context =
key custom_js_location custom-js:location key custom_js_location custom-js:location
key custom_js_filename custom-js:filename key custom_js_filename custom-js:filename
key monitor_template_rendered buildout:directory key monitor_template_rendered buildout:directory
key cythonplus_repository cythonplus-repository:location
key gcc_location gcc:prefix
[versions] [versions]
Pygments = 2.7.2 Pygments = 2.7.2
......
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