Commit db189451 authored by Nikola Balog's avatar Nikola Balog

Merge remote-tracking branch 'nikola_wendelin/drone_ingestion'

parents bfe4ea1d ee333bd0
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<global name="_reconstructor" module="copy_reg"/>
</klass>
<tuple>
<global name="DateTime" module="DateTime.DateTime"/>
<global name="object" module="__builtin__"/>
<none/>
</tuple>
<state>
<tuple>
<float>1700235015.03</float>
<string>UTC</string>
</tuple>
</state>
</object>
</value>
</item>
<item>
<key> <string>validation_state</string> </key>
<value> <string>validated</string> </value>
</item>
</dictionary>
</list>
</value>
</item>
</dictionary>
</pickle>
</record>
</ZopeData>
<?xml version="1.0"?>
<ZopeData>
<record id="1" aka="AAAAAAAAAAE=">
<pickle>
<global name="Data Transformation Operation Line" module="erp5.portal_type"/>
</pickle>
<pickle>
<dictionary>
<item>
<key> <string>_identity_criterion</string> </key>
<value>
<persistent> <string encoding="base64">AAAAAAAAAAI=</string> </persistent>
</value>
</item>
<item>
<key> <string>_range_criterion</string> </key>
<value>
<persistent> <string encoding="base64">AAAAAAAAAAM=</string> </persistent>
</value>
</item>
<item>
<key> <string>categories</string> </key>
<value>
<tuple>
<string>trade_phase/data/convert</string>
<string>resource/data_operation_module/convert_raw_data_to_array</string>
<string>quantity_unit/unit/piece</string>
</tuple>
</value>
</item>
<item>
<key> <string>default_reference</string> </key>
<value> <string>data_operation</string> </value>
</item>
<item>
<key> <string>description</string> </key>
<value>
<none/>
</value>
</item>
<item>
<key> <string>id</string> </key>
<value> <string>1</string> </value>
</item>
<item>
<key> <string>int_index</string> </key>
<value> <int>1</int> </value>
</item>
<item>
<key> <string>quantity</string> </key>
<value> <float>1.0</float> </value>
</item>
<item>
<key> <string>title</string> </key>
<value> <string>Convert Raw Data to Array</string> </value>
</item>
</dictionary>
</pickle>
</record>
<record id="2" aka="AAAAAAAAAAI=">
<pickle>
<global name="PersistentMapping" module="Persistence.mapping"/>
</pickle>
<pickle>
<dictionary>
<item>
<key> <string>data</string> </key>
<value>
<dictionary/>
</value>
</item>
</dictionary>
</pickle>
</record>
<record id="3" aka="AAAAAAAAAAM=">
<pickle>
<global name="PersistentMapping" module="Persistence.mapping"/>
</pickle>
<pickle>
<dictionary>
<item>
<key> <string>data</string> </key>
<value>
<dictionary/>
</value>
</item>
</dictionary>
</pickle>
</record>
</ZopeData>
<?xml version="1.0"?>
<ZopeData>
<record id="1" aka="AAAAAAAAAAE=">
<pickle>
<global name="Data Transformation Resource Line" module="erp5.portal_type"/>
</pickle>
<pickle>
<dictionary>
<item>
<key> <string>_identity_criterion</string> </key>
<value>
<persistent> <string encoding="base64">AAAAAAAAAAI=</string> </persistent>
</value>
</item>
<item>
<key> <string>_range_criterion</string> </key>
<value>
<persistent> <string encoding="base64">AAAAAAAAAAM=</string> </persistent>
</value>
</item>
<item>
<key> <string>aggregated_portal_type</string> </key>
<value>
<tuple>
<string>Data Bucket Stream</string>
<string>Progress Indicator</string>
</tuple>
</value>
</item>
<item>
<key> <string>categories</string> </key>
<value>
<tuple>
<string>trade_phase/data/convert</string>
<string>resource/data_product_module/drone_raw_data</string>
<string>use/big_data/ingestion/stream</string>
</tuple>
</value>
</item>
<item>
<key> <string>default_reference</string> </key>
<value> <string>in_stream</string> </value>
</item>
<item>
<key> <string>description</string> </key>
<value>
<none/>
</value>
</item>
<item>
<key> <string>id</string> </key>
<value> <string>2</string> </value>
</item>
<item>
<key> <string>int_index</string> </key>
<value> <int>1</int> </value>
</item>
<item>
<key> <string>quantity</string> </key>
<value> <float>-1.0</float> </value>
</item>
<item>
<key> <string>title</string> </key>
<value> <string>Raw_data</string> </value>
</item>
</dictionary>
</pickle>
</record>
<record id="2" aka="AAAAAAAAAAI=">
<pickle>
<global name="PersistentMapping" module="Persistence.mapping"/>
</pickle>
<pickle>
<dictionary>
<item>
<key> <string>data</string> </key>
<value>
<dictionary/>
</value>
</item>
</dictionary>
</pickle>
</record>
<record id="3" aka="AAAAAAAAAAM=">
<pickle>
<global name="PersistentMapping" module="Persistence.mapping"/>
</pickle>
<pickle>
<dictionary>
<item>
<key> <string>data</string> </key>
<value>
<dictionary/>
</value>
</item>
</dictionary>
</pickle>
</record>
</ZopeData>
<?xml version="1.0"?>
<ZopeData>
<record id="1" aka="AAAAAAAAAAE=">
<pickle>
<global name="Data Transformation Resource Line" module="erp5.portal_type"/>
</pickle>
<pickle>
<dictionary>
<item>
<key> <string>_identity_criterion</string> </key>
<value>
<persistent> <string encoding="base64">AAAAAAAAAAI=</string> </persistent>
</value>
</item>
<item>
<key> <string>_range_criterion</string> </key>
<value>
<persistent> <string encoding="base64">AAAAAAAAAAM=</string> </persistent>
</value>
</item>
<item>
<key> <string>aggregated_portal_type</string> </key>
<value>
<tuple>
<string>Data Array</string>
</tuple>
</value>
</item>
<item>
<key> <string>categories</string> </key>
<value>
<tuple>
<string>trade_phase/data/convert</string>
<string>use/big_data/ingestion/stream</string>
<string>resource/data_product_module/drone_raw_array</string>
<string>quantity_unit/unit/piece</string>
</tuple>
</value>
</item>
<item>
<key> <string>default_reference</string> </key>
<value> <string>out_array</string> </value>
</item>
<item>
<key> <string>description</string> </key>
<value>
<none/>
</value>
</item>
<item>
<key> <string>id</string> </key>
<value> <string>3</string> </value>
</item>
<item>
<key> <string>int_index</string> </key>
<value> <int>2</int> </value>
</item>
<item>
<key> <string>quantity</string> </key>
<value> <float>1.0</float> </value>
</item>
<item>
<key> <string>title</string> </key>
<value> <string>Raw array</string> </value>
</item>
</dictionary>
</pickle>
</record>
<record id="2" aka="AAAAAAAAAAI=">
<pickle>
<global name="PersistentMapping" module="Persistence.mapping"/>
</pickle>
<pickle>
<dictionary>
<item>
<key> <string>data</string> </key>
<value>
<dictionary/>
</value>
</item>
</dictionary>
</pickle>
</record>
<record id="3" aka="AAAAAAAAAAM=">
<pickle>
<global name="PersistentMapping" module="Persistence.mapping"/>
</pickle>
<pickle>
<dictionary>
<item>
<key> <string>data</string> </key>
<value>
<dictionary/>
</value>
</item>
</dictionary>
</pickle>
</record>
</ZopeData>
<?xml version="1.0"?>
<ZopeData>
<record id="1" aka="AAAAAAAAAAE=">
<pickle>
<global name="Data Transformation Operation Line" module="erp5.portal_type"/>
</pickle>
<pickle>
<dictionary>
<item>
<key> <string>_identity_criterion</string> </key>
<value>
<persistent> <string encoding="base64">AAAAAAAAAAI=</string> </persistent>
</value>
</item>
<item>
<key> <string>_range_criterion</string> </key>
<value>
<persistent> <string encoding="base64">AAAAAAAAAAM=</string> </persistent>
</value>
</item>
<item>
<key> <string>categories</string> </key>
<value>
<tuple>
<string>trade_phase/data/convert</string>
<string>resource/data_operation_module/convert_raw_data_to_array</string>
<string>quantity_unit/unit/piece</string>
</tuple>
</value>
</item>
<item>
<key> <string>default_reference</string> </key>
<value> <string>data_operation</string> </value>
</item>
<item>
<key> <string>description</string> </key>
<value>
<none/>
</value>
</item>
<item>
<key> <string>id</string> </key>
<value> <string>1</string> </value>
</item>
<item>
<key> <string>int_index</string> </key>
<value> <int>1</int> </value>
</item>
<item>
<key> <string>quantity</string> </key>
<value> <float>1.0</float> </value>
</item>
<item>
<key> <string>title</string> </key>
<value> <string>Convert Raw Data to Array</string> </value>
</item>
</dictionary>
</pickle>
</record>
<record id="2" aka="AAAAAAAAAAI=">
<pickle>
<global name="PersistentMapping" module="Persistence.mapping"/>
</pickle>
<pickle>
<dictionary>
<item>
<key> <string>data</string> </key>
<value>
<dictionary/>
</value>
</item>
</dictionary>
</pickle>
</record>
<record id="3" aka="AAAAAAAAAAM=">
<pickle>
<global name="PersistentMapping" module="Persistence.mapping"/>
</pickle>
<pickle>
<dictionary>
<item>
<key> <string>data</string> </key>
<value>
<dictionary/>
</value>
</item>
</dictionary>
</pickle>
</record>
</ZopeData>
import pandas as pd
import numpy as np
# Function to remove non-ASCII characters from a string, because I can not be bothered to make to_records with utf8 right now
def remove_non_ascii(text):
return ''.join(char for char in str(text) if ord(char) < 128)
progress_indicator = in_stream["Progress Indicator"]
in_data_stream = in_stream["Data Bucket Stream"]
out_data_array = out_array["Data Array"]
keys = in_data_stream.getKeyList()
end = progress_indicator.getStringOffsetIndex()
if end is None:
end = ""
if len(keys) == 0:
context.log("No Keys found")
return
dtype= {'timestamp (ms)': '<f8',
'latitude ()': '<f8',
'longitude ()': '<f8',
'AMSL (m)': '<f8',
'rel altitude (m)': '<f8',
'yaw ()': '<f8',
'ground speed (m/s)': '<f8',
'climb rate (m/s)': '<f8'}
if len([x for x in keys if x not in end]) == 0:
context.log("No new keys found")
return
new_end = ""
for key in [x for x in keys if x not in end]:
try:
log = in_data_stream.getBucketByKey(key)
df = pd.read_csv(log, sep=';', dtype=dtype)
if df.shape[0] == 0:
return
# Remove non-ASCII characters from DataFrame values
df = df.applymap(remove_non_ascii)
# Remove non-ASCII characters from column names (headers)
df.columns = df.columns.map(remove_non_ascii)
non_numeric_columns = df.select_dtypes(exclude=[np.number]).columns
df[non_numeric_columns] = df[non_numeric_columns].apply(pd.to_numeric, errors='coerce')
ndarray = df.to_records(index = False) #column_dtypes does not work here for some reasone, even if it is an actuall parameter
zbigarray = out_data_array.getArray()
if zbigarray is None:
zbigarray = out_data_array.initArray(shape=(0,), dtype=ndarray.dtype.fields)
start_array = zbigarray.shape[0]
zbigarray.append(ndarray)
try:
data_array_line = out_array.get(key)
if data_array_line is None:
data_array_line = out_data_array.newContent(id=key,
portal_type="Data Array Line")
data_array_line.edit(reference=key,
index_expression="%s:%s" %(start_array, zbigarray.shape[0])
)
except:
context.log("Can not create Data Array Line")
except:
context.log("File "+str(key)+ " is not well formated")
new_end = new_end + str(key)
progress_indicator.setStringOffsetIndex(end + new_end)
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