Fix Import/Export milestone and 1to1 models issue

Fix 1to1 relations on project failing to be importing and milestone ordering issue.

Fixes https://gitlab.com/gitlab-org/gitlab-ce/issues/22585

See merge request !6521
Conflicts:
	spec/lib/gitlab/import_export/project_tree_restorer_spec.rb

Fix IssuesController#show degradation including project on loaded notes

See merge request !6540

Fix pipelines table headers

## What does this MR do?

Removed stages loop for a single 'Stages' header.

## Are there points in the code the reviewer needs to double check?

## Why was this MR needed?

The headers were messing the table up. Note the redundant headers and squished cells.

![Screen_Shot_2016-09-27_at_14.40.51](/uploads/331b08c30a4af59cefc460ab4f3c2a61/Screen_Shot_2016-09-27_at_14.40.51.png)

## Screenshots (if relevant)

![Screen_Shot_2016-09-27_at_14.39.04](/uploads/687895e9152d4fe8d8f3bfc1233af39b/Screen_Shot_2016-09-27_at_14.39.04.png)

## Does this MR meet the acceptance criteria?

- [ ] [CHANGELOG](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/CHANGELOG) entry added
- [ ] [Documentation created/updated](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/doc/development/doc_styleguide.md)
- [ ] API support added
- Tests
  - [ ] Added for this feature/bug
  - [ ] All builds are passing
- [ ] Conform by the [merge request performance guides](http://docs.gitlab.com/ce/development/merge_request_performance_guidelines.html)
- [ ] Conform by the [style guides](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/CONTRIBUTING.md#style-guides)
- [ ] Branch has no merge conflicts with `master` (if you do - rebase it please)
- [ ] [Squashed related commits together](https://git-scm.com/book/en/Git-Tools-Rewriting-History#Squashing-Commits)

## What are the relevant issue numbers?


Closes #22472

See merge request !6542

Be nice to Docker Clients talking to JWT/auth

## What does this MR do?

Makes all errors returned by JWT endpoint to be docker-compatible.

Closes https://gitlab.com/gitlab-org/gitlab-ce/issues/22465

See merge request !6536

Fixed search dropdown labels not displaying

## What does this MR do?

Returns the search controller method after finding the project & group.

## Why was this MR needed?

The search controller was returning early when the search term was empty causing a bug where the dropdown toggles wouldn't show the correct text - instead defaulting to `Any`.

## Screenshots (if relevant)

![Screen_Shot_2016-09-09_at_12.09.57](/uploads/8c6bb36f4e163312314611d2877d5fa4/Screen_Shot_2016-09-09_at_12.09.57.png)

## What are the relevant issue numbers?

Closes #21783

See merge request !6277

Fix Cycle Analytics landing widget state and improve state management in Vue.

## What does this MR do?
- Fixes Cycle Analytics help widget show/hide issue
- Addresses initial MR feedback with improving Vue state management logic
- Fixes cookie path of the help widget so when you close a help widget in a repo it won't be visible for other repos.

## Are there points in the code the reviewer needs to double check?
- Should we move `gl.cycleAnalyticsModel` to a new file.

## Why was this MR needed?
- Addresses feedbacks of [initial MR](https://gitlab.com/gitlab-org/gitlab-ce/merge_requests/5986) and fixes #22483

## Screenshots (if relevant)

## Does this MR meet the acceptance criteria?

- [ ] [CHANGELOG](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/CHANGELOG) entry added
- [x] [Documentation created/updated](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/doc/development/doc_styleguide.md)
- [x] API support added
- Tests
  - [x] Added for this feature/bug
  - [x] All builds are passing
- [x] Conform by the [merge request performance guides](http://docs.gitlab.com/ce/development/merge_request_performance_guidelines.html)
- [x] Conform by the [style guides](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/CONTRIBUTING.md#style-guides)
- [x] Branch has no merge conflicts with `master` (if you do - rebase it please)
- [x] [Squashed related commits together](https://git-scm.com/book/en/Git-Tools-Rewriting-History#Squashing-Commits)

## What are the relevant issue numbers?
Fixes #22483

See merge request !6492

Makes Cycle analytics mobile friendly

## What does this MR do?
Makes Cycle analytics page mobile friendly

## Are there points in the code the reviewer needs to double check?

## Why was this MR needed?
Cycle analytics page was not mobile friendly

## Screenshots (if relevant)
![optionB](/uploads/a1d7f2f4db100e1a8aa76c0156ef8641/optionB.png)

## Does this MR meet the acceptance criteria?

- [ ] [CHANGELOG](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/CHANGELOG) entry added
- [ ] [Documentation created/updated](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/doc/development/doc_styleguide.md)
- [ ] API support added
- Tests
  - [ ] Added for this feature/bug
  - [ ] All builds are passing
- [x] Conform by the [merge request performance guides](http://docs.gitlab.com/ce/development/merge_request_performance_guidelines.html)
- [x] Conform by the [style guides](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/CONTRIBUTING.md#style-guides)
- [ ] Branch has no merge conflicts with `master` (if you do - rebase it please)
- [ ] [Squashed related commits together](https://git-scm.com/book/en/Git-Tools-Rewriting-History#Squashing-Commits)

## What are the relevant issue numbers?
fixes #22444

See merge request !6482

Fix a memory leak in HTML::Pipeline::SanitizationFilter::WHITELIST

See merge request !6456

Add link to broadcast messages docs

[ci skip]

See merge request !6495

Describe how the recent changes of CI permissions affect builds

## What does this MR do?

This describes how the CI permission changes

See merge request !6451

Revert the "accurate issuable counts in issuable list" feature

## Why was this MR needed?

!6455 introduced a performance killer, so we revert it until we find a proper solution that's not killing performance.

## What are the relevant issue numbers?

Revert !6455 and !4960.

See merge request !6476

fix dropdowns for mr-versions

## What does this MR do?
Change markup of mr version dropdowns to be in line with ui guidelines so that the dropdown content is scrollable.

## Why was this MR needed?
Dropdowns were not scrolling.

## Does this MR meet the acceptance criteria?

- [ ] [CHANGELOG](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/CHANGELOG) entry added
- [ ] [Documentation created/updated](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/doc/development/doc_styleguide.md)
- [ ] API support added
- Tests
  - [ ] Added for this feature/bug
  - [ ] All builds are passing
- [ ] Conform by the [merge request performance guides](http://docs.gitlab.com/ce/development/merge_request_performance_guidelines.html)
- [ ] Conform by the [style guides](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/CONTRIBUTING.md#style-guides)
- [ ] Branch has no merge conflicts with `master` (if you do - rebase it please)
- [ ] [Squashed related commits together](https://git-scm.com/book/en/Git-Tools-Rewriting-History#Squashing-Commits)

## What are the relevant issue numbers?
https://gitlab.com/gitlab-org/gitlab-ce/issues/21427

cc @brycepj @dzaporozhets

See merge request !6460

API: Return 404 when trying to fork to unaccessible namespace

Closes #22417

See merge request !6452

Fixes protected branches not removing active item

## What does this MR do?

Fixes an problem where protected branches weren't getting their active item removed on a second click because they dont have a field value.

## Why was this MR needed?

Protected branches could not have their clicked items removed once clicked.

See merge request !6440

Intercept issues search form submit to preserve filters.

## What does this MR do?

Fixes https://gitlab.com/gitlab-org/gitlab-ce/issues/896 by intercepting manual search form submission and redirecting it to use existing logic (now factored out into `executeSearch`).  

## Why was this MR needed?

Manual form submission (keying in 'enter') in issues search did not preserve applied filters. 

## What are the relevant issue numbers?

https://gitlab.com/gitlab-org/gitlab-ce/issues/896

See merge request !6054

Fix pipeline error when trying to read empty merge request diff

When a user pushed something which resulted an empty merge request diff, `st_commits` would be `nil`. Therefore we also need to check if there exists `st_commits`.

We could tell this from:

``` ruby
def commits
  @commits ||= load_commits(st_commits || [])
end
```

and

``` ruby
def save_commits
  new_attributes = {}

  commits = compare.commits

  if commits.present?
    commits = Commit.decorate(commits, merge_request.source_project).reverse
    new_attributes[:st_commits] = dump_commits(commits)
  end

  update_columns_serialized(new_attributes)
end
```

Closes #22438

See merge request !6470

Hotfix the issuable counters when filtering by multiple labels

This is an ugly fix, but it make the counters work when multiple labels are selected so I think we should include it in 8.12, and try to find a proper fix afterward.

Closes #22421

See merge request !6455

Update merge request versions documentation with new screenshots

For #13570 based on https://gitlab.com/gitlab-org/gitlab-ce/issues/21427

See merge request !6454

Fixups for Frontend for Merge Request Diff

## What does this MR do?

Makes a few revisions to https://gitlab.com/gitlab-org/gitlab-ce/merge_requests/6343, as per feedback from @DouweM. Specifically, it removes a duplicate in the changelog, removes colons in dropdowns, uses icon helper, and fixes the 'Show original' link path.

## Why was this MR needed?

https://gitlab.com/gitlab-org/gitlab-ce/merge_requests/6343 was already merged and this is a needed patch. 

## What are the relevant issue numbers?

https://gitlab.com/gitlab-org/gitlab-ce/merge_requests/6343

See merge request !6448

Update db/schema.rb per most recent migrations



See merge request !6446

Bump gitlab-shell upgrade version to 3.6.0 for 8.12

[ci skip]

Closes #22442

See merge request !6469

Fix typos in cycle analytics docs



See merge request !6467

Change location and refactor issue closing pattern documentation

## Moving docs to a new location?

See the guidelines: http://docs.gitlab.com/ce/development/doc_styleguide.html#changing-document-location

- [x] Make sure the old link is not removed and has its contents replaced with a link to the new location.
- [x] Make sure internal links pointing to the document in question are not broken.
- [x] Search and replace any links referring to old docs in GitLab Rails app, specifically under the `app/views/` directory.
- [x] If working on CE, submit an MR to EE with the changes as well.

See merge request !6466

Reorganize sections in Admin area settings

## What does this MR do?

Some settings were under the "wrong" category. This is an attempt to provide proper categories and move relevant settings there.

## What are the relevant issue numbers?

Fixes https://gitlab.com/gitlab-org/gitlab-ce/issues/20126


See merge request !5449

Signed-off-by: Rémy Coutable <remy@rymai.me>

This reverts merge request !6429

Fix Import/Export security specs

Related https://dev.gitlab.org/gitlab/gitlabhq/merge_requests/1987#note_83855

See merge request !1997

Import/Export security specs

Fixes https://gitlab.com/gitlab-org/gitlab-ce/issues/20857

Related: https://gitlab.com/gitlab-org/gitlab-ce/issues/20821/

See merge request !1987

Fixed slash commands not loading

## What does this MR do?

Fixes an issue with slash commands not working when the autocomplete source is loading & then the new issue button is clicked. This also fixes an issue where the autocomplete source is loaded on pages where it isn't actually needed.

## What are the relevant issue numbers?

Closes #21774, #21807

See merge request !6207

Add docs on Cycle Analytics

Document Cycle Analytics first iteration https://gitlab.com/gitlab-org/gitlab-ce/issues/21170

See merge request !6437

Test if issue authors can access private projects

See merge request !6419

Post-merge improve of CI permissions

Improves code from !6409

See merge request !6432

Bump GITLAB_SHELL_VERSION to 3.6.0 for SSH support for LFS.

cc @rdavila

See merge request !6441

Fix new project button alignment

## What does this MR do?
Increases the width of the button/search container to fit all items at smaller screen width. The left side of the row can only have a max of two tabs (All Projects, Shared Projects), so everything can still fit on one line until they resize for mobile

## Why was this MR needed?
The `New project` button wrapped to next line at smaller screen width, breaking the layout

## Screenshots (if relevant)
![Screen_Shot_2016-09-09_at_11.44.27_AM](/uploads/a726208deec6623d9fb62db0a549bf38/Screen_Shot_2016-09-09_at_11.44.27_AM.png)
![Screen_Shot_2016-09-09_at_11.46.29_AM](/uploads/bd8dc911757b14c5fafc4d3849e0b242/Screen_Shot_2016-09-09_at_11.46.29_AM.png)

## What are the relevant issue numbers?
Closes #20310

See merge request !6286

Limit number of shown environments

## What does this MR do?

This MR limits in context of Merge Request a list of shown environments. Previously we would show all environments containing the SHA of the head commit of Merge Request. However, with introducing of dynamically created environments this lead to a cases that we would show multiple review apps, for different branches, because these branches would contain a new questioned commit.

This MR changes what environments we test against presence of the commit, to:
1. We look for environments with deployments to source_branch of source_project: used for deployments to per-branch environments,
2. We look for environments with deployments to target_branch of target_project: used for deployments to staging / production environments,
3. We look for environments with deployments for tags on target_project: used for staging / production environments.

## Why was this MR needed?

To improve a list of returned environments when we introduced ability to create dynamic environments for review apps:
https://gitlab.com/gitlab-org/gitlab-ce/merge_requests/6323

See merge request !6438