MDEV-22521 Server crashes in traverse_role_graph_up or Assertion `user' fails in traverse_role_graph_impl

The only change between Percona XtraDB Server 5.6.48-88.0
and 5.6.49-89.0 (apart from the version number change) was
percona/percona-server@25ec24092064c2ab95752705e592e0c038ec1111
which we had already addressed in
commit 7c03edf2 and
commit c0fca286.

Do not collect EITS statistics for this statement:

  ALTER TABLE t ANALYZE PARTITION p

EITS stats are currently global, not per-partition.
Collecting global stats when we are asked to process just one partition
causes issues for DBAs.

MDEV-23010 UPDATE privilege at Database and Table level fail to update with SELECT command denied to user

check both column- and table-level grants when looking for SELECT
privilege on UPDATE statement.

Fix prefix key comparison in partitioning. Comparions must
take into account no more than prefix_len characters.

It used to compare prefix_len*mbmaxlen bytes.

if mysql_create_view() is aborted when view is linked into lex
(when WSREP_TO_ISOLATION_BEGIN fails),
it should not be linked there again on err:.

fix uninitialized struct member

wait_while_table_is_used() should return an error if handler::extra() fails

Largely based on MySQL commit
https://github.com/mysql/mysql-server/commit/75271e51d60bce8683423b208cbb43b11ca6060e

MySQL Ref:
    BUG#24566529: BACKPORT BUG#23575445 TO 5.6

    (cut)
    Also, the PTR_SANE macro which tries to check if a pointer
    is invalid (used when printing pointer values in stack traces)
    gave false negatives on OSX/FreeBSD. On these platforms we
    now simply check if the pointer is non-null. This also removes
    a sbrk() deprecation warning when building on OS X. (It was
    before only disabled with building using XCode).

Removed execinfo path of MySQL patch that was already included.

sbrk doesn't exist on FreeBSD aarch64.

Removed HAVE_BSS_START based detection and replaced with __linux__
as it doesn't exist on OSX, Solaris or Windows.  __bss_start
exists on mutiple Linux architectures.

Tested on FreeBSD and Linux x86_64. Being in FreeBSD ports for 2
years implies a good testing there on all FreeBSD architectures there
too. MySQL-8.0.21 code is functionally identical to original commit.

There was no ability to set the mtr arguments of:
* --max-save-core; and
* --max-save-datadir

to 0. This is desireable in an automatied scenario where space
is limited hence targeting 10.1 branch.

We take away the 0 means unlimited aspect for these,
however, perl can handle some big numbers so they may as well be
close enough to unlimited for all meaningful purposes.

Correct to a true 2^14 rather than some different number that
was actually just a number typo.

Bug report thanks to Hartmut Holzgraefe.

truncate_double() did not take into account the max_value
limit in case when dec<NOT_FIXED_DEC.

* Fix the crash: IN-to-EXISTS rewrite causes an error (and so
  JOIN::optimize() fails with an error, too), don't call
  update_used_tables(). Terminate the query execution instead.

* Fix the cause of the error in the IN-to-EXISTS rewrite: don't do
  the rewrite if doing it will cause an error of this kind:
  This version of MariaDB doesn't yet support 'SUBQUERY in ROW in left
  expression of IN/ALL/ANY'

* Fix another issue exposed by this testcase:
  JOIN::setup_subquery_caches() may be invoked before any select has
  saved its query plan, and will crash because none of the SELECTs
  has called create_explain_query_if_not_exists() to create the Explain
  Data Structure for this SELECT.

TODO: When merging this to 10.2, remove the poorly-placed call to
create_explain_query_if_not_exists made by fix for M_D_E_V-16153

Removed duplicate.

Also move the --no-defaults option close to the other "default*"
options.

THD proc info was assigned from stack allocated temporary buffer
which went out of scope immediately after assignment.

Fixed by removing the use of temp buffer and assign proc info
from string literal.

Problem:
=======
  fts_cache_append_deleted_doc_ids() holds the deleted_lock and tries to
access size of deleted_doc_ids. In the meantime, fts_cache_clear()
clears the sync_heap before clearing deleted_doc_ids. It leads to
invalid access of deleted_doc_ids.

Fix:
===
fts_cache_clear() should free the sync_heap after clearing
deleted_doc_ids.

The srv_monitor_event and the srv_monitor_thread would not be
created when InnoDB is in read-only mode. Yet, some code would
unconditionally invoke os_event_set(srv_monitor_event).

The issue occurs when the subquery_cache is enabled.
When there is a cache miss the division was leading to a value with scale 9.
In the case of cache hit the value returned was of scale 9 and due to the different
values for the scales the where condition evaluated to FALSE, hence the output
was incomplete.

To fix this problem we need to round up the decimal to the limit mentioned in
Item::decimals. This would make sure the values are compared with the same
scale.

When InnoDB is extending a data file, it is updating the FSP_SIZE
field in the first page of the data file.

In commit 8451e090 (MDEV-11556)
we removed a work-around for this bug and made recovery stricter,
by making it track changes to FSP_SIZE via redo log records, and
extend the data files before any changes are being applied to them.

It turns out that the function fsp_fill_free_list() is not crash-safe
with respect to this when it is initializing the change buffer bitmap
page (page 1, or generally, N*innodb_page_size+1). It uses a separate
mini-transaction that is committed (and will be written to the redo
log file) before the mini-transaction that actually extended the data
file. Hence, recovery can observe a reference to a page that is
beyond the current end of the data file.

fsp_fill_free_list(): Initialize the change buffer bitmap page in
the same mini-transaction.

The rest of the changes are fixing a bug that the use of the separate
mini-transaction was attempting to work around. Namely, we must ensure
that no other thread will access the change buffer bitmap page before
our mini-transaction has been committed and all page latches have been
released.

That is, for read-ahead as well as neighbour flushing, we must avoid
accessing pages that might not yet be durably part of the tablespace.

fil_space_t::committed_size: The size of the tablespace
as persisted by mtr_commit().

fil_space_t::max_page_number_for_io(): Limit the highest page
number for I/O batches to committed_size.

MTR_MEMO_SPACE_X_LOCK: Replaces MTR_MEMO_X_LOCK for fil_space_t::latch.

mtr_x_space_lock(): Replaces mtr_x_lock() for fil_space_t::latch.

mtr_memo_slot_release_func(): When releasing MTR_MEMO_SPACE_X_LOCK,
copy space->size to space->committed_size. In this way, read-ahead
or flushing will never be invoked on pages that do not yet exist
according to FSP_SIZE.

Server auto-sets lower_case_file_system value based on default
datadir's behavior instead of instead of using the directory specified
by the user through the configuration file or command line options.

This patch fixes this problem.

-Wl,-z,relro,-z,now are linker flags and should
be checked as such.

TODO: perform module, exe shared checks separately
rather than a pure linker check.

An oveflow was happening on windows because on Windows sizeof(ulong) is 4 bytes
while it is 8 bytes on Linux.
Switched avg_frequency and avg length for column statistics to ulonglong.
Switched avg_frequency for index statistics to ulonglong.

The only InnoDB changes between Percona XtraDB Server 5.6.47-87.0
and 5.6.48-88.0 are related to InnoDB changes between MySQL 5.6.47
and MySQL 5.6.48, which we had already applied.

There were no InnoDB changes between MySQL 5.6.48 and MySQL 5.6.49.

This issue was originally reported by Fungo Wang, along with a fix, as
MySQL Bug #98990.

His suggested fix was applied as part of
mysql/mysql-server@a003fc373d1adb3ccea353b5d7d83f6c4c552383
and released in MySQL 5.7.31.

i_s_metrics_fill(): Add the missing call to Field::set_notnull(),
and simplify some code.

- i_s_fts_index_cache_fill() should take shared lock of fts cache
before accessing index cache to avoid reading stale data.

- Problem is that test case creates iblogfile* files. So existing
ibdata pages could point to future LSN. Fix is that taking the
backup of data before iblogfile* creation and apply it before
exiting the test case.

MDEV-22890 DEADLOCK of threads detected: row0sel.cc S-LOCK / btr0cur.cc S-LOCK / row0quiesce.cc X-LOCK

Problem:
=======
- Read operations are always allowed to hold a secondary index leaf
latch and then look up the corresponding clustered index record.
Flush table operation acquires secondary index latch while holding
a clustered index latch. It leads to deadlock violation.

Fix:
====
- Flush table operation should acquire secondary index before taking
clustered index to avoid deadlock violation with select operation.

Only install wsrep scripts and links if WSREP_ON is actually set

When setting the PLUGIN_AUTH_PAM variable, mark it as a "CACHE" variable
so it can be overridden by the user.