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Stefane Fermigier
neo
Commits
ca7acefc
Commit
ca7acefc
authored
Nov 28, 2017
by
Julien Muchembled
Browse files
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Browse Files
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Plain Diff
storage: pass schema of tables to migration methods
parent
04f6d9c3
Changes
3
Show whitespace changes
Inline
Side-by-side
Showing
3 changed files
with
72 additions
and
58 deletions
+72
-58
neo/storage/database/manager.py
neo/storage/database/manager.py
+2
-2
neo/storage/database/mysqldb.py
neo/storage/database/mysqldb.py
+32
-25
neo/storage/database/sqlite.py
neo/storage/database/sqlite.py
+38
-31
No files found.
neo/storage/database/manager.py
View file @
ca7acefc
...
@@ -161,13 +161,13 @@ class DatabaseManager(object):
...
@@ -161,13 +161,13 @@ class DatabaseManager(object):
"The database can not be upgraded because you have unfinished"
"The database can not be upgraded because you have unfinished"
" transactions. Use an older version of NEO to verify them."
)
" transactions. Use an older version of NEO to verify them."
)
def
migrate
(
self
):
def
migrate
(
self
,
*
args
,
**
kw
):
version
=
int
(
self
.
getConfiguration
(
"version"
)
or
0
)
version
=
int
(
self
.
getConfiguration
(
"version"
)
or
0
)
if
self
.
VERSION
<
version
:
if
self
.
VERSION
<
version
:
raise
DatabaseFailure
(
"The database can not be downgraded."
)
raise
DatabaseFailure
(
"The database can not be downgraded."
)
while
version
<
self
.
VERSION
:
while
version
<
self
.
VERSION
:
version
+=
1
version
+=
1
getattr
(
self
,
'_migrate%s'
%
version
)()
getattr
(
self
,
'_migrate%s'
%
version
)(
*
args
,
**
kw
)
self
.
setConfiguration
(
"version"
,
version
)
self
.
setConfiguration
(
"version"
,
version
)
def
doOperation
(
self
,
app
):
def
doOperation
(
self
,
app
):
...
...
neo/storage/database/mysqldb.py
View file @
ca7acefc
...
@@ -15,6 +15,7 @@
...
@@ -15,6 +15,7 @@
# along with this program. If not, see <http://www.gnu.org/licenses/>.
# along with this program. If not, see <http://www.gnu.org/licenses/>.
from
binascii
import
a2b_hex
from
binascii
import
a2b_hex
from
collections
import
OrderedDict
import
MySQLdb
import
MySQLdb
from
MySQLdb
import
DataError
,
IntegrityError
,
\
from
MySQLdb
import
DataError
,
IntegrityError
,
\
OperationalError
,
ProgrammingError
OperationalError
,
ProgrammingError
...
@@ -176,7 +177,7 @@ class MySQLDatabaseManager(DatabaseManager):
...
@@ -176,7 +177,7 @@ class MySQLDatabaseManager(DatabaseManager):
if
e
.
args
[
0
]
!=
NO_SUCH_TABLE
:
if
e
.
args
[
0
]
!=
NO_SUCH_TABLE
:
raise
raise
def
_migrate1
(
self
):
def
_migrate1
(
self
,
_
):
self
.
_checkNoUnfinishedTransactions
()
self
.
_checkNoUnfinishedTransactions
()
self
.
query
(
"DROP TABLE IF EXISTS ttrans"
)
self
.
query
(
"DROP TABLE IF EXISTS ttrans"
)
...
@@ -184,32 +185,29 @@ class MySQLDatabaseManager(DatabaseManager):
...
@@ -184,32 +185,29 @@ class MySQLDatabaseManager(DatabaseManager):
self
.
_config
.
clear
()
self
.
_config
.
clear
()
q
=
self
.
query
q
=
self
.
query
p
=
engine
=
self
.
_engine
p
=
engine
=
self
.
_engine
schema_dict
=
OrderedDict
()
if
self
.
nonempty
(
"config"
)
is
None
:
# The table "config" stores configuration
# The table "config" stores configuration
# parameters which affect the persistent data.
# parameters which affect the persistent data.
q
(
"""CREATE TABLE config
(
schema_dict
[
'config'
]
=
"""CREATE TABLE %s
(
name VARBINARY(255) NOT NULL PRIMARY KEY,
name VARBINARY(255) NOT NULL PRIMARY KEY,
value VARBINARY(255) NULL
value VARBINARY(255) NULL
) ENGINE="""
+
engine
)
) ENGINE="""
+
engine
self
.
_setConfiguration
(
"version"
,
self
.
VERSION
)
else
:
self
.
migrate
()
# The table "pt" stores a partition table.
# The table "pt" stores a partition table.
q
(
"""CREATE TABLE IF NOT EXISTS pt
(
schema_dict
[
'pt'
]
=
"""CREATE TABLE %s
(
rid INT UNSIGNED NOT NULL,
rid INT UNSIGNED NOT NULL,
nid INT NOT NULL,
nid INT NOT NULL,
state TINYINT UNSIGNED NOT NULL,
state TINYINT UNSIGNED NOT NULL,
PRIMARY KEY (rid, nid)
PRIMARY KEY (rid, nid)
) ENGINE="""
+
engine
)
) ENGINE="""
+
engine
if
self
.
_use_partition
:
if
self
.
_use_partition
:
p
+=
""" PARTITION BY LIST (`partition`) (
p
+=
""" PARTITION BY LIST (`partition`) (
PARTITION dummy VALUES IN (NULL))"""
PARTITION dummy VALUES IN (NULL))"""
# The table "trans" stores information on committed transactions.
# The table "trans" stores information on committed transactions.
q
(
"""CREATE TABLE IF NOT EXISTS tran
s (
schema_dict
[
'trans'
]
=
"""CREATE TABLE %
s (
`partition` SMALLINT UNSIGNED NOT NULL,
`partition` SMALLINT UNSIGNED NOT NULL,
tid BIGINT UNSIGNED NOT NULL,
tid BIGINT UNSIGNED NOT NULL,
packed BOOLEAN NOT NULL,
packed BOOLEAN NOT NULL,
...
@@ -219,10 +217,10 @@ class MySQLDatabaseManager(DatabaseManager):
...
@@ -219,10 +217,10 @@ class MySQLDatabaseManager(DatabaseManager):
ext BLOB NOT NULL,
ext BLOB NOT NULL,
ttid BIGINT UNSIGNED NOT NULL,
ttid BIGINT UNSIGNED NOT NULL,
PRIMARY KEY (`partition`, tid)
PRIMARY KEY (`partition`, tid)
) ENGINE="""
+
p
)
) ENGINE="""
+
p
# The table "obj" stores committed object metadata.
# The table "obj" stores committed object metadata.
q
(
"""CREATE TABLE IF NOT EXISTS obj
(
schema_dict
[
'obj'
]
=
"""CREATE TABLE %s
(
`partition` SMALLINT UNSIGNED NOT NULL,
`partition` SMALLINT UNSIGNED NOT NULL,
oid BIGINT UNSIGNED NOT NULL,
oid BIGINT UNSIGNED NOT NULL,
tid BIGINT UNSIGNED NOT NULL,
tid BIGINT UNSIGNED NOT NULL,
...
@@ -231,7 +229,7 @@ class MySQLDatabaseManager(DatabaseManager):
...
@@ -231,7 +229,7 @@ class MySQLDatabaseManager(DatabaseManager):
PRIMARY KEY (`partition`, tid, oid),
PRIMARY KEY (`partition`, tid, oid),
KEY (`partition`, oid, tid),
KEY (`partition`, oid, tid),
KEY (data_id)
KEY (data_id)
) ENGINE="""
+
p
)
) ENGINE="""
+
p
if
engine
==
"TokuDB"
:
if
engine
==
"TokuDB"
:
engine
+=
" compression='tokudb_uncompressed'"
engine
+=
" compression='tokudb_uncompressed'"
...
@@ -239,21 +237,21 @@ class MySQLDatabaseManager(DatabaseManager):
...
@@ -239,21 +237,21 @@ class MySQLDatabaseManager(DatabaseManager):
# The table "data" stores object data.
# The table "data" stores object data.
# We'd like to have partial index on 'hash' column (e.g. hash(4))
# We'd like to have partial index on 'hash' column (e.g. hash(4))
# but 'UNIQUE' constraint would not work as expected.
# but 'UNIQUE' constraint would not work as expected.
q
(
"""CREATE TABLE IF NOT EXISTS data
(
schema_dict
[
'data'
]
=
"""CREATE TABLE %%s
(
id BIGINT UNSIGNED NOT NULL AUTO_INCREMENT PRIMARY KEY,
id BIGINT UNSIGNED NOT NULL AUTO_INCREMENT PRIMARY KEY,
hash BINARY(20) NOT NULL,
hash BINARY(20) NOT NULL,
compression TINYINT UNSIGNED NULL,
compression TINYINT UNSIGNED NULL,
value MEDIUMBLOB NOT NULL%s
value MEDIUMBLOB NOT NULL%s
) ENGINE=%s"""
%
(
""",
) ENGINE=%s"""
%
(
""",
UNIQUE (hash, compression)"""
if
dedup
else
""
,
engine
)
)
UNIQUE (hash, compression)"""
if
dedup
else
""
,
engine
)
q
(
"""CREATE TABLE IF NOT EXISTS bigdata
(
schema_dict
[
'bigdata'
]
=
"""CREATE TABLE %s
(
id INT UNSIGNED NOT NULL AUTO_INCREMENT PRIMARY KEY,
id INT UNSIGNED NOT NULL AUTO_INCREMENT PRIMARY KEY,
value MEDIUMBLOB NOT NULL
value MEDIUMBLOB NOT NULL
) ENGINE="""
+
engine
)
) ENGINE="""
+
engine
# The table "ttrans" stores information on uncommitted transactions.
# The table "ttrans" stores information on uncommitted transactions.
q
(
"""CREATE TABLE IF NOT EXISTS ttran
s (
schema_dict
[
'ttrans'
]
=
"""CREATE TABLE %
s (
`partition` SMALLINT UNSIGNED NOT NULL,
`partition` SMALLINT UNSIGNED NOT NULL,
tid BIGINT UNSIGNED,
tid BIGINT UNSIGNED,
packed BOOLEAN NOT NULL,
packed BOOLEAN NOT NULL,
...
@@ -262,17 +260,26 @@ class MySQLDatabaseManager(DatabaseManager):
...
@@ -262,17 +260,26 @@ class MySQLDatabaseManager(DatabaseManager):
description BLOB NOT NULL,
description BLOB NOT NULL,
ext BLOB NOT NULL,
ext BLOB NOT NULL,
ttid BIGINT UNSIGNED NOT NULL
ttid BIGINT UNSIGNED NOT NULL
) ENGINE="""
+
engine
)
) ENGINE="""
+
engine
# The table "tobj" stores uncommitted object metadata.
# The table "tobj" stores uncommitted object metadata.
q
(
"""CREATE TABLE IF NOT EXISTS tobj
(
schema_dict
[
'tobj'
]
=
"""CREATE TABLE %s
(
`partition` SMALLINT UNSIGNED NOT NULL,
`partition` SMALLINT UNSIGNED NOT NULL,
oid BIGINT UNSIGNED NOT NULL,
oid BIGINT UNSIGNED NOT NULL,
tid BIGINT UNSIGNED NOT NULL,
tid BIGINT UNSIGNED NOT NULL,
data_id BIGINT UNSIGNED NULL,
data_id BIGINT UNSIGNED NULL,
value_tid BIGINT UNSIGNED NULL,
value_tid BIGINT UNSIGNED NULL,
PRIMARY KEY (tid, oid)
PRIMARY KEY (tid, oid)
) ENGINE="""
+
engine
)
) ENGINE="""
+
engine
if
self
.
nonempty
(
'config'
)
is
None
:
q
(
schema_dict
.
pop
(
'config'
)
%
'config'
)
self
.
_setConfiguration
(
'version'
,
self
.
VERSION
)
else
:
self
.
migrate
(
schema_dict
)
for
table
,
schema
in
schema_dict
.
iteritems
():
q
(
schema
%
(
'IF NOT EXISTS '
+
table
))
self
.
_uncommitted_data
.
update
(
q
(
"SELECT data_id, count(*)"
self
.
_uncommitted_data
.
update
(
q
(
"SELECT data_id, count(*)"
" FROM tobj WHERE data_id IS NOT NULL GROUP BY data_id"
))
" FROM tobj WHERE data_id IS NOT NULL GROUP BY data_id"
))
...
...
neo/storage/database/sqlite.py
View file @
ca7acefc
...
@@ -14,6 +14,7 @@
...
@@ -14,6 +14,7 @@
# You should have received a copy of the GNU General Public License
# You should have received a copy of the GNU General Public License
# along with this program. If not, see <http://www.gnu.org/licenses/>.
# along with this program. If not, see <http://www.gnu.org/licenses/>.
from
collections
import
OrderedDict
import
os
import
os
import
sqlite3
import
sqlite3
from
hashlib
import
sha1
from
hashlib
import
sha1
...
@@ -112,7 +113,7 @@ class SQLiteDatabaseManager(DatabaseManager):
...
@@ -112,7 +113,7 @@ class SQLiteDatabaseManager(DatabaseManager):
if
not
e
.
args
[
0
].
startswith
(
"no such table:"
):
if
not
e
.
args
[
0
].
startswith
(
"no such table:"
):
raise
raise
def
_migrate1
(
self
):
def
_migrate1
(
self
,
*
_
):
self
.
_checkNoUnfinishedTransactions
()
self
.
_checkNoUnfinishedTransactions
()
self
.
query
(
"DROP TABLE IF EXISTS ttrans"
)
self
.
query
(
"DROP TABLE IF EXISTS ttrans"
)
...
@@ -123,27 +124,26 @@ class SQLiteDatabaseManager(DatabaseManager):
...
@@ -123,27 +124,26 @@ class SQLiteDatabaseManager(DatabaseManager):
# relatively slow; unit tests enables the UNSAFE boolean flag.
# relatively slow; unit tests enables the UNSAFE boolean flag.
self
.
_config
.
clear
()
self
.
_config
.
clear
()
q
=
self
.
query
q
=
self
.
query
schema_dict
=
OrderedDict
()
index_dict
=
{}
if
self
.
nonempty
(
"config"
)
is
None
:
# The table "config" stores configuration
# The table "config" stores configuration
# parameters which affect the persistent data.
# parameters which affect the persistent data.
q
(
"CREATE TABLE IF NOT EXISTS config ("
schema_dict
[
'config'
]
=
"""CREATE TABLE %s (
" name TEXT NOT NULL PRIMARY KEY,"
name TEXT NOT NULL PRIMARY KEY,
" value TEXT)"
)
value TEXT)
self
.
_setConfiguration
(
"version"
,
self
.
VERSION
)
"""
else
:
self
.
migrate
()
# The table "pt" stores a partition table.
# The table "pt" stores a partition table.
q
(
"""CREATE TABLE IF NOT EXISTS pt
(
schema_dict
[
'pt'
]
=
"""CREATE TABLE %s
(
rid INTEGER NOT NULL,
rid INTEGER NOT NULL,
nid INTEGER NOT NULL,
nid INTEGER NOT NULL,
state INTEGER NOT NULL,
state INTEGER NOT NULL,
PRIMARY KEY (rid, nid))
PRIMARY KEY (rid, nid))
"""
)
"""
# The table "trans" stores information on committed transactions.
# The table "trans" stores information on committed transactions.
q
(
"""CREATE TABLE IF NOT EXISTS tran
s (
schema_dict
[
'trans'
]
=
"""CREATE TABLE %
s (
partition INTEGER NOT NULL,
partition INTEGER NOT NULL,
tid INTEGER NOT NULL,
tid INTEGER NOT NULL,
packed BOOLEAN NOT NULL,
packed BOOLEAN NOT NULL,
...
@@ -153,38 +153,34 @@ class SQLiteDatabaseManager(DatabaseManager):
...
@@ -153,38 +153,34 @@ class SQLiteDatabaseManager(DatabaseManager):
ext BLOB NOT NULL,
ext BLOB NOT NULL,
ttid INTEGER NOT NULL,
ttid INTEGER NOT NULL,
PRIMARY KEY (partition, tid))
PRIMARY KEY (partition, tid))
"""
)
"""
# The table "obj" stores committed object metadata.
# The table "obj" stores committed object metadata.
q
(
"""CREATE TABLE IF NOT EXISTS obj
(
schema_dict
[
'obj'
]
=
"""CREATE TABLE %s
(
partition INTEGER NOT NULL,
partition INTEGER NOT NULL,
oid INTEGER NOT NULL,
oid INTEGER NOT NULL,
tid INTEGER NOT NULL,
tid INTEGER NOT NULL,
data_id INTEGER,
data_id INTEGER,
value_tid INTEGER,
value_tid INTEGER,
PRIMARY KEY (partition, tid, oid))
PRIMARY KEY (partition, tid, oid))
"""
)
"""
q
(
"""CREATE INDEX IF NOT EXISTS _obj_i1 ON
index_dict
[
'obj'
]
=
(
obj(partition, oid, tid)
"CREATE INDEX %s ON %s(partition, oid, tid)"
,
"""
)
"CREATE INDEX %s ON %s(data_id)"
)
q
(
"""CREATE INDEX IF NOT EXISTS _obj_i2 ON
obj(data_id)
"""
)
# The table "data" stores object data.
# The table "data" stores object data.
q
(
"""CREATE TABLE IF NOT EXISTS data
(
schema_dict
[
'data'
]
=
"""CREATE TABLE %s
(
id INTEGER PRIMARY KEY AUTOINCREMENT,
id INTEGER PRIMARY KEY AUTOINCREMENT,
hash BLOB NOT NULL,
hash BLOB NOT NULL,
compression INTEGER NOT NULL,
compression INTEGER NOT NULL,
value BLOB NOT NULL)
value BLOB NOT NULL)
"""
)
"""
if
dedup
:
if
dedup
:
q
(
"""CREATE UNIQUE INDEX IF NOT EXISTS _data_i1 ON
index_dict
[
'data'
]
=
(
data(hash, compression)
"CREATE UNIQUE INDEX %s ON %s(hash, compression)"
,)
"""
)
# The table "ttrans" stores information on uncommitted transactions.
# The table "ttrans" stores information on uncommitted transactions.
q
(
"""CREATE TABLE IF NOT EXISTS ttran
s (
schema_dict
[
'ttrans'
]
=
"""CREATE TABLE %
s (
partition INTEGER NOT NULL,
partition INTEGER NOT NULL,
tid INTEGER,
tid INTEGER,
packed BOOLEAN NOT NULL,
packed BOOLEAN NOT NULL,
...
@@ -193,17 +189,28 @@ class SQLiteDatabaseManager(DatabaseManager):
...
@@ -193,17 +189,28 @@ class SQLiteDatabaseManager(DatabaseManager):
description BLOB NOT NULL,
description BLOB NOT NULL,
ext BLOB NOT NULL,
ext BLOB NOT NULL,
ttid INTEGER NOT NULL)
ttid INTEGER NOT NULL)
"""
)
"""
# The table "tobj" stores uncommitted object metadata.
# The table "tobj" stores uncommitted object metadata.
q
(
"""CREATE TABLE IF NOT EXISTS tobj
(
schema_dict
[
'tobj'
]
=
"""CREATE TABLE %s
(
partition INTEGER NOT NULL,
partition INTEGER NOT NULL,
oid INTEGER NOT NULL,
oid INTEGER NOT NULL,
tid INTEGER NOT NULL,
tid INTEGER NOT NULL,
data_id INTEGER,
data_id INTEGER,
value_tid INTEGER,
value_tid INTEGER,
PRIMARY KEY (tid, oid))
PRIMARY KEY (tid, oid))
"""
)
"""
if
self
.
nonempty
(
'config'
)
is
None
:
q
(
schema_dict
.
pop
(
'config'
)
%
'config'
)
self
.
_setConfiguration
(
'version'
,
self
.
VERSION
)
else
:
self
.
migrate
(
schema_dict
,
index_dict
)
for
table
,
schema
in
schema_dict
.
iteritems
():
q
(
schema
%
(
'IF NOT EXISTS '
+
table
))
for
i
,
index
in
enumerate
(
index_dict
.
get
(
table
,
()),
1
):
q
(
index
%
(
'IF NOT EXISTS _%s_i%s'
%
(
table
,
i
),
table
))
self
.
_uncommitted_data
.
update
(
q
(
"SELECT data_id, count(*)"
self
.
_uncommitted_data
.
update
(
q
(
"SELECT data_id, count(*)"
" FROM tobj WHERE data_id IS NOT NULL GROUP BY data_id"
))
" FROM tobj WHERE data_id IS NOT NULL GROUP BY data_id"
))
...
...
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