Theia 1.16.0

See theia's [changelog](https://github.com/eclipse-theia/theia/blob/v1.16.0/CHANGELOG.md#v1160---7292021), we update from 1.13.0 to 1.16.0.

Changes specific to slapos port:
 * We set `warnOnPotentiallyInsecureHostPattern` because the new warning is very intrusive ... but it might actually be very insecure. For now we don't have solution. We are tracking this in https://erp5js.nexedi.net/#/bug_module/20210819-20614EE
 * New libsecret component that is now required by theia
 * Switch to using vscode git instead of theia git, to use timeline ( see https://github.com/eclipse-theia/theia/pull/7997 )
 * globally version up slapos.core to https://pypi.org/project/slapos.core/1.6.18/

See merge request nexedi/slapos!1039

component/libsecret/buildout.cfg

+[buildout]
+parts = libsecret
+extends =
+  ../gnutls/buildout.cfg
+  ../libxslt/buildout.cfg
+  ../pkgconfig/buildout.cfg
+  ../glib/buildout.cfg
+  ../gettext/buildout.cfg
+  ../libuuid/buildout.cfg
+  ../xz-utils/buildout.cfg
+
+
+[libsecret]
+recipe = slapos.recipe.cmmi
+url = https://download.gnome.org/sources/libsecret/0.20/libsecret-0.20.4.tar.xz
+md5sum = bf92f48afab2891f644f311e0f37683f
+shared = true
+configure-options = 
+  --with-libgcrypt-prefix=${libgcrypt:location}
+  --with-libintl-prefix=${gettext:location}
+  --disable-gtk-doc-html
+  --disable-manpages
+  --disable-vala
+
+environment = 
+  PATH=${xz-utils:location}/bin/:${pkgconfig:location}/bin:${libxslt:location}/bin:${glib:location}/bin:${libgcrypt:location}/bin/:%(PATH)s
+  PKG_CONFIG_PATH=${:pkg-config-path-depends}
+  LDFLAGS=-Wl,-rpath=${gettext:location}/lib -Wl,-rpath=${zlib:location}/lib -Wl,-rpath=${libgcrypt:location}/lib -Wl,-rpath=${pcre:location}/lib -Wl,-rpath=${libuuid:location}/lib
+pkg-config-path-depends = ${glib:location}/lib/pkgconfig:${pcre:location}/lib/pkgconfig:${libgcrypt:location}/lib/pkgconfig:${libuuid:location}/lib/pkgconfig
+pkg-config-path = @@LOCATION@@/lib/pkgconfig:${:pkg-config-path-depends}

software/theia/buildout.hash.cfg

@@ -15,7 +15,7 @@
 
 [instance-theia]
 _update_hash_filename_ = instance-theia.cfg.jinja.in
-md5sum = e0fb65c34b2d3d524cbca85579728e54
+md5sum = 562acf69f344fa9f6d03992d696462d0
 
 [instance]
 _update_hash_filename_ = instance.cfg.in
@@ -47,7 +47,7 @@ md5sum = 9e8c17a4b2d802695caf0c2c052f0d11
 
 [yarn.lock]
 _update_hash_filename_ = yarn.lock
-md5sum = 80e7ad91deea54cebcccef5a83fdb380
+md5sum = 18e8302b2acff3721cad23d829e3df55
 
 [python-language-server-requirements.txt]
 _update_hash_filename_ = python-language-server-requirements.txt

software/theia/download-plugins.cfg

@@ -13,6 +13,7 @@ urls = vscode-bat https://open-vsx.org/api/vscode/bat/1.54.3/file/vscode.bat-1.5
 	vscode-docker https://open-vsx.org/api/vscode/docker/1.54.3/file/vscode.docker-1.54.3.vsix a4e3cdd03833fe6bf3f5045fc5be4433
 	vscode-emmet https://open-vsx.org/api/vscode/emmet/1.54.3/file/vscode.emmet-1.54.3.vsix 5786c95921794ed3188083a7f804fa29
 	vscode-fsharp https://open-vsx.org/api/vscode/fsharp/1.54.3/file/vscode.fsharp-1.54.3.vsix 028f4ec9593533ce38603032b3f2821e
+	vscode-git https://open-vsx.org/api/vscode/git/1.54.3/file/vscode.git-1.54.3.vsix da2f2c0626b4a254a660ae20b0c97611
 	vscode-go https://open-vsx.org/api/vscode/go/1.54.3/file/vscode.go-1.54.3.vsix 9f095a75e4137079351150722d091256
 	vscode-groovy https://open-vsx.org/api/vscode/groovy/1.54.3/file/vscode.groovy-1.54.3.vsix 7ae14c40786311fda29059178f30c310
 	vscode-grunt https://open-vsx.org/api/vscode/grunt/1.54.3/file/vscode.grunt-1.54.3.vsix f7894259f1fa60e939ff2d9b49138a02

software/theia/generate_download_plugins_cfg.py

@@ -17,6 +17,7 @@ for plugin_and_version in '''\
     vscode/docker/latest
     vscode/emmet/latest
     vscode/fsharp/latest
+    vscode/git/latest
     vscode/go/latest
     vscode/groovy/latest
     vscode/grunt/latest

software/theia/instance-theia.cfg.jinja.in

@@ -397,9 +397,6 @@ template =
     . {{ activate }}
     unset GIT_EXEC_PATH
     set -- --rcfile {{ bashrc }}
-  # otherwise, assume this shell is running task and add an artificial delay to workaround https://github.com/eclipse-theia/theia/issues/2961
-  else
-    sleep 1
   fi
   exec "$SHELL" "$@"
   {% endraw %}

software/theia/software.cfg

@@ -12,6 +12,8 @@ extends =
    ../../component/coreutils/buildout.cfg
    ../../component/java-jdk/buildout.cfg
    ../../component/fonts/buildout.cfg
+   ../../component/libsecret/buildout.cfg
+   ../../component/pkgconfig/buildout.cfg
    ../../stack/nodejs.cfg
    ../../stack/slapos.cfg
    ../../stack/monitor/buildout.cfg
@@ -206,7 +208,11 @@ stop-on-error = true
 [theia]
 recipe = plone.recipe.command
 command = ${bash:location}/bin/bash -c "
-  export TMPDIR=${:location}/tmp PATH=${nodejs:location}/bin:$PATH &&
+  export \
+    TMPDIR=${:location}/tmp \
+    PATH=${nodejs:location}/bin:${pkgconfig:location}/bin:$PATH \
+    PKG_CONFIG_PATH=${libsecret:pkg-config-path} \
+    LDFLAGS='-Wl,-rpath=${libsecret:location}/lib -L${gettext:location}/lib -Wl,-rpath=${gettext:location}/lib -Wl,-rpath=${glib:location}/lib' && \
   mkdir -p ${:location} && \
   mkdir -p \$TMPDIR && \
   cd ${:location} && \
@@ -248,6 +254,11 @@ template =
   inline:{
       "private": true,
       "theia": {
+          "backend": {
+              "config": {
+                  "warnOnPotentiallyInsecureHostPattern": false
+              }
+          },
           "frontend": {
               "config": {
                   "applicationName": "Theia SlapOS",
@@ -277,7 +288,8 @@ template =
                       "plantuml.render": "PlantUMLServer",
                       "gitlens.remotes": [{ "domain": "lab.nexedi.com", "type": "GitLab" }],
                       "java.home": "${java-jdk:location}"
-                  }
+                  },
+                  "warnOnPotentiallyInsecureHostPattern": false
               }
           },
           "generator": {
@@ -287,17 +299,16 @@ template =
           }
       },
       "dependencies": {
+          "@theia/bulk-edit": "latest",
           "@theia/callhierarchy": "latest",
           "@theia/console": "latest",
           "@theia/core": "latest",
-          "@theia/cpp-debug": "latest",
           "@theia/debug": "latest",
           "@theia/editor": "latest",
           "@theia/editor-preview": "latest",
           "@theia/file-search": "latest",
           "@theia/filesystem": "latest",
           "@theia/getting-started": "latest",
-          "@theia/git": "latest",
           "@theia/keymaps": "latest",
           "@theia/markers": "latest",
           "@theia/messages": "latest",
@@ -307,16 +318,19 @@ template =
           "@theia/navigator": "latest",
           "@theia/outline-view": "latest",
           "@theia/output": "latest",
-          "@theia/plugin": "latest",
+          "@theia/plugin-dev": "latest",
           "@theia/plugin-ext": "latest",
           "@theia/plugin-ext-vscode": "latest",
           "@theia/preferences": "latest",
           "@theia/preview": "latest",
           "@theia/process": "latest",
+          "@theia/property-view": "latest",
           "@theia/scm": "latest",
+          "@theia/scm-extra": "latest",
           "@theia/search-in-workspace": "latest",
           "@theia/task": "latest",
           "@theia/terminal": "latest",
+          "@theia/timeline": "latest",
           "@theia/typehierarchy": "latest",
           "@theia/userstorage": "latest",
           "@theia/variable-resolver": "latest",

stack/slapos.cfg

@@ -191,7 +191,7 @@ setuptools-dso = 1.7
 rubygemsrecipe  = 0.3.0
 six = 1.12.0
 slapos.cookbook = 1.0.197
-slapos.core = 1.6.17
+slapos.core = 1.6.18
 slapos.extension.strip = 0.4
 slapos.extension.shared = 1.0
 slapos.libnetworkcache = 0.20