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Commit 2584a608 authored by Marco Mariani's avatar Marco Mariani
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extracted numpy component

parent 90d74c37
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Showing with 332 additions and 107 deletions
component/libatlas/buildout.cfg
View file @ 2584a608
......@@ -11,22 +11,40 @@ filename = ${:_buildout_section_name_}
download-only = true
[atlas-download]
recipe = hexagonit.recipe.download
version = 3.10.1
filename = atlas${:version}.tar.bz2
url = http://downloads.sourceforge.net/project/math-atlas/Stable/${:version}/${:filename}
md5sum = 78753e869231cc1417a92eebaa076718
download-only = true
mode = 0644
location = ${buildout:parts-directory}/${:_buildout_section_name_}
[lapack-download]
recipe = hexagonit.recipe.download
version = 3.5.0
filename = lapack-${:version}.tgz
url = http://www.netlib.org/lapack/${:filename}
md5sum = b1d3e3e425b2e44a06760ff173104bdf
download-only = true
mode = 0644
location = ${buildout:parts-directory}/${:_buildout_section_name_}
[libatlas]
recipe = cp.recipe.cmd
location = ${buildout:parts-directory}/${:_buildout_section_name_}
version = 3.10.1
lapack_version = 3.5.0
filename = atlas${:version}.tar.bz2
install_cmd =
set -e
mkdir -p ${:location}__compile__
cd ${:location}__compile__
export SRCdir=`pwd`/ATLAS
export BLDdir=`pwd`/build
wget -nc http://downloads.sourceforge.net/project/math-atlas/Stable/${:version}/${:filename}
wget -nc http://www.netlib.org/lapack/lapack-${:lapack_version}.tgz
echo "78753e869231cc1417a92eebaa076718 ${:filename}" | md5sum --check --strict --quiet -
tar xfj atlas${:version}.tar.bz2
tar xfj ${atlas-download:location}/${atlas-download:filename}
cd $SRCdir
# http://stackoverflow.com/questions/14592401/atlas-install-really-need-to-get-past-cpu-throttle-check
# http://sourceforge.net/p/math-atlas/support-requests/886/
......@@ -37,7 +55,7 @@ install_cmd =
export LD_PRELOAD=$F77LIB
$SRCdir/configure -b 64 \
--prefix=${:location} \
--with-netlib-lapack-tarfile=${:location}__compile__/lapack-${:lapack_version}.tgz \
--with-netlib-lapack-tarfile=${lapack-download:location}/${lapack-download:filename} \
-C acg ${gcc-fortran:location}/bin/gcc \
-C if ${gcc-fortran:location}/bin/gfortran \
--shared
......
component/numpy/buildout.cfg 0 → 100644
View file @ 2584a608
[buildout]
extends =
../git/buildout.cfg
../gcc/buildout.cfg
../libatlas/buildout.cfg
../libblas/buildout.cfg
[scipy-repository.git]
recipe = slapos.recipe.build:gitclone
repository = https://github.com/mmariani/scipy.git
branch = hardcoded-numpy-location
git-executable = ${git:location}/bin/git
[scikit-learn-repository.git]
recipe = slapos.recipe.build:gitclone
repository = https://github.com/scikit-learn/scikit-learn.git
branch = master
git-executable = ${git:location}/bin/git
[build-venv]
dependency = ${prerequired-eggs:recipe}
recipe = cp.recipe.cmd
location = ${buildout:parts-directory}/${:_buildout_section_name_}
install_cmd =
if [ -d ${:location} ]; then
exit
fi
mkdir -p ${:location}
cd ${:location}
unset PYTHONPATH
export PATH="${gcc-fortran:location}/bin:$PATH"
export LD_PRELOAD="${gcc-fortran:location}/lib64/libgfortran.so.3 ${libblas:location}/libf77blas.so.3"
export ATLAS=${libatlas:location}/lib/libsatlas.so
export BLAS=${libblas:location}/lib/libfblas.a
export LAPACK=${libatlas:location}/lib/liblapack.a
${python2.7-virtualenv:executable} ${:location}
. ${:location}/bin/activate
${:location}/bin/pip install numpy
${:location}/bin/pip install Tempita
export PYTHONPATH=${buildout:eggs-directory}/numpy-1.8.1-py2.7-linux-x86_64.egg
cd ${scipy-repository.git:location}
python setupegg.py bdist_egg
cd ${scikit-learn-repository.git:location}
python setup.py bdist_egg
update_cmd = ${:install_cmd}
[prerequired-eggs]
recipe = zc.recipe.egg
eggs =
slapos.cookbook
numpy
[numpy-eggs]
dependencies = ${build-venv:recipe}
recipe = zc.recipe.egg
find-links =
${scipy-repository.git:location}/dist
${scikit-learn-repository.git:location}/dist
eggs =
numpy
scipy
scikit-learn
interpreter = python-numpy
[versions]
cp.recipe.cmd = 0.5nxd001
numpy = 1.8.1
scipy = 0.13.3001
scikit-learn = 0.16-git
software/numpy/erp5.cfg 0 → 100644
View file @ 2584a608
[buildout]
extends =
../../stack/erp5/buildout.cfg
../../component/numpy/buildout.cfg
parts =
build-venv
numpy-eggs
# erp5 stack
rdiff-backup
aspell
aspell-en-dictionary
apache
apache-antiloris
file
graphviz
haproxy
jsl
stunnel
varnish-3.0
w3m
poppler
libpng
ghostscript
mariadb
mroonga-mariadb
imagemagick
inkscape
libdmtx
dmtx-utils
kumo
libreoffice-bin
w3-validator
tesseract
hookbox
perl-DBD-mariadb
perl-DBI
percona-toolkit
zabbix-agent
dcron
dash
wget
# Buildoutish
patched-eggs
eggs
testrunner
test_suite_runner
# basic Xorg
libXdmcp
libXext
libXau
libSM
libXrender
# fonts
liberation-fonts
ipaex-fonts
ipa-fonts
ocrb-fonts
android-fonts
# Cloudooo specific part
cloudooo
# get git repositories
erp5
genbt5list
# fix products path (Zeo needs ERP5 Products to be available for
# conflict resolution)
fix-products-paths
# some additional utils
slapos-toolbox
zodbanalyze
# Local development
slapos.cookbook-repository
check-recipe
# Create instance template
template
[networkcache]
# signature certificates of the following uploaders.
# Romain Courteaud
# Sebastien Robin
# Kazuhiko Shiozaki
# Cedric de Saint Martin
# Yingjie Xu
# Gabriel Monnerat
# Łukasz Nowak
# Test Agent (Automatic update from tests)
# Aurélien Calonne
signature-certificate-list =
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q7jdfWO18Zp/BG7tagz0jmmC4y/8akzHsVlruo2+2du2freE8dK746uoMlXlP93g
QUUGLQ==
-----END CERTIFICATE-----
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-----END CERTIFICATE-----
-----BEGIN CERTIFICATE-----
MIIB9jCCAV+gAwIBAgIJAPHoWu90gbsgMA0GCSqGSIb3DQEBBQUAMBQxEjAQBgNV
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software/numpy/software.cfg
View file @ 2584a608
......@@ -6,26 +6,18 @@ extends =
../../component/gcc/buildout.cfg
../../component/libatlas/buildout.cfg
../../component/libblas/buildout.cfg
../../component/r-language/buildout.cfg
parts =
python2.7-virtualenv
eggs
gcc-fortran
libatlas
libblas
r-language
sh-build-environment
build-venv
numpy-eggs
# dream-venv
# scipy-eggs
# python2.7-virtualenv
# gcc-fortran
# libatlas
# libblas
......@@ -36,8 +28,7 @@ install_cmd =
mkdir -p ${:location}
cd ${:location}
unset PYTHONPATH
export PATH="${r-language:location}/bin:${gcc-fortran:location}/bin:$PATH"
export LD_LIBRARY_PATH="`${r-language:location}/bin/R RHOME`/lib"
export PATH="${gcc-fortran:location}/bin:$PATH"
export LD_PRELOAD="${gcc-fortran:location}/lib64/libgfortran.so.3 ${libblas:location}/libf77blas.so.3"
export ATLAS=${libatlas:location}/lib/libsatlas.so
export BLAS=${libblas:location}/lib/libfblas.a
......@@ -49,61 +40,16 @@ install_cmd =
pip install numpy
pip install Tempita
export PYTHONPATH=/opt/slapgrid/72198f37425e64dd3f28648ea523da1d/eggs/numpy-1.8.1-py2.7-linux-x86_64.egg
git clone https://github.com/mmariani/scipy.git -b hardcoded-numpy-location
${git:location}/bin/git clone https://github.com/mmariani/scipy.git -b hardcoded-numpy-location
cd scipy
python setupegg.py bdist_egg
cd ..
git clone https://github.com/scikit-learn/scikit-learn.git
${git:location}/bin/git clone https://github.com/scikit-learn/scikit-learn.git
cd scikit-learn
python setup.py bdist_egg
#update_cmd = ${:install_cmd}
#[dream-venv]
#recipe = cp.recipe.cmd
#location = ${buildout:parts-directory}/${:_buildout_section_name_}
#install_cmd =
# mkdir -p ${:location}
# cd ${:location}
# unset PYTHONPATH
# export PATH="${r-language:location}/bin:${gcc-fortran:location}/bin:$PATH"
# export LD_LIBRARY_PATH="`${r-language:location}/bin/R RHOME`/lib"
# export LD_PRELOAD="${gcc-fortran:location}/lib64/libgfortran.so.3 ${libblas:location}/libf77blas.so.3"
# export ATLAS=${libatlas:location}/lib/libsatlas.so
# export BLAS=${libblas:location}/lib/libfblas.a
# export LAPACK=${libatlas:location}/lib/liblapack.a
# ${python2.7-virtualenv:executable} ${:location}
# . ${:location}/bin/activate
# #pip install -U setuptools
# #pip install -U pip
# pip install numpy
# pip install simpy==2.3
# pip install scipy==0.13.3
# pip install scikit-learn
# pip install xlrd
# pip install xlwt
# pip install flask
# pip install pyparsing==1.5.7
# pip install pydot
# # export LDFLAGS="-lncurses"
# export PATH=${r-language:location}/bin:$PATH
# # pip install rpy2
# # clone repo for:
# # bug fix - https://bitbucket.org/lgautier/rpy2/issue/183
# # (may switch to released egg later)
# pip install mercurial
# hg clone -b version_2.4.x_noreadline https://marco.mariani@bitbucket.org/marco.mariani/rpy2
# cd rpy2
# python setup.py install
# cd ..
# ${git:location}/bin/git clone http://git.erp5.org/repos/dream.git -b marco
# cd dream
# python setup.py install
#update_cmd = ${:install_cmd}
[eggs]
......@@ -134,43 +80,9 @@ interpreter = python-numpy
#[scipy-eggs]
#recipe = zc.recipe.egg:custom
#eggs =
# scipy
#environment = build-environment
#[base-environment]
#recipe = collective.recipe.environment
#[build-environment]
#PYTHONPATH=
#PATH="${r-language:location}/bin:${gcc-fortran:location}/bin:${base-environment:PATH}"
#LD_LIBRARY_PATH="`${r-language:location}/bin/R RHOME`/lib"
#LD_PRELOAD="${gcc-fortran:location}/lib64/libgfortran.so.3 ${libblas:location}/libf77blas.so.3"
#ATLAS="${libatlas:location}/lib/libsatlas.so"
#BLAS="${libblas:location}/lib/libfblas.a"
#LAPACK="${libatlas:location}/lib/liblapack.a"
[sh-build-environment]
# environment needed for running/debugging the applications, exported to a shell script to be sourced.
recipe = collective.recipe.template
output = ${buildout:directory}/environment.sh
input = inline:
unset PYTHONPATH
export PATH="${r-language:location}/bin:${gcc-fortran:location}/bin:$PATH"
export LD_LIBRARY_PATH="`${r-language:location}/bin/R RHOME`/lib"
export LD_PRELOAD="${gcc-fortran:location}/lib64/libgfortran.so.3 ${libblas:location}/libf77blas.so.3"
export ATLAS=${libatlas:location}/lib/libsatlas.so
export BLAS=${libblas:location}/lib/libfblas.a
export LAPACK=${libatlas:location}/lib/liblapack.a
[versions]
cp.recipe.cmd = 0.5nxd001
scipy = 0.13.3001
scikit-learn = 0.15-git
scikit-learn = 0.16-git
stack/erp5/buildout.cfg
View file @ 2584a608
......@@ -70,6 +70,7 @@ extends =
../../component/aspell/buildout.cfg
../../component/cloudooo/buildout.cfg
../../component/jsl/buildout.cfg
../../component/numpy/buildout.cfg
parts =
rdiff-backup
......@@ -434,6 +435,7 @@ ZODB3-patch-binary = ${patch:location}/bin/patch
[eggs]
recipe = zc.recipe.egg
eggs =
${numpy-eggs:eggs}
${mysql-python:egg}
${lxml-python:egg}
${pillow-python:egg}
......@@ -583,7 +585,7 @@ setuptools = 2.2
huBarcode = 0.63
# Known version with works
numpy = 1.6.2
numpy = 1.8.1
# test_UserManagerInterfaces in testERP5Security fails with 1.10.0.
Products.PluggableAuthService = 1.9.0
......
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