Third updated patch - this version also includes copyright notice in added Perl script.
This patch implements a check for such modules at runtime. If modules are not found or unable to load, the test is skipped with 
the following message:
            
            [ skipped ]  Test needs Perl modules DBI and DBD::mysql
            
Checks are done via a helper Perl script which looks for the module in a runtime environment that is as similar to that of the 
mysqlhotcopy script as possible (thus not intended for Windows environments at this time).
The helper script tells mysql-test about the result by writing information to a temporary file that is later read by mysql-test.
See comments in added files (have_dbi_dbd-mysql.inc and checkDBI_DBD-mysql.pl) for details.
The patch also removes the mysqlhotcopy tests from the list of disabled tests.

Do as mysqld_safe: if running mysqld-debug, plugins are in debug subdirs
NB mtr --debug won't work in this context until 47141 is fixed
Also moved read_plugin_defs; no point running this in all worker threads

rb://582 approved by Marko

for external_size
      
rb://581 approved by Marko

Added --mysqld-env option, propagate via safe_process
Simplified: should be safe to set in parent safe_process after it's started
Addendum: catch cases of --mysqld-env w/o value, assume env.var 
    name never begins with "--"

Fixed the 'show profile source' part of the bug.
Leaving SHOW ENGINE INNODB MUTEX to a separate patch.



sql/sql_class.cc:
  Use base_name(calling_file) for dbug trace and profiling.

trx_get_trx_by_xid(): Invalidate trx->xid after a successful lookup,
so that subsequent callers will not find the same transaction.

The only callers of trx_get_trx_by_xid() will be invoking
innobase_commit_low() or innobase_rollback_trx(), and those code paths
should not depend on trx->xid.

rb://584 approved by Jimmy Yang

that refers to trx_sys_set_ibuf_format().
Change buffer format tagging was never implemented.

No commit message

bug#57924 does not occur in 5.5, so I reverted the 5.1 specific
code and used the errors from 5.5 instead in the tests

           that implement add_index

The problem was that ALTER TABLE blocked reads on an InnoDB table
while adding a secondary index, even if this was not needed. It is
only needed for the final step where the .frm file is updated.

The reason queries were blocked, was that ALTER TABLE upgraded the
metadata lock from MDL_SHARED_NO_WRITE (which blocks writes) to
MDL_EXCLUSIVE (which blocks all accesses) before index creation.

The way the server handles index creation, is that storage engines
publish their capabilities to the server and the server determines
which of the following three ways this can be handled: 1) build a
new version of the table; 2) change the existing table but with
exclusive metadata lock; 3) change the existing table but without
metadata lock upgrade.

For InnoDB and secondary index creation, option 3) should have been
selected. However this failed for two reasons. First, InnoDB did
not publish this capability properly.

Second, the ALTER TABLE code failed to made proper use of the
information supplied by the storage engine. A variable
need_lock_for_indexes was set accordingly, but was not later used.
This patch fixes this problem by only doing metadata lock upgrade
before index creation/deletion if this variable has been set.

This patch also changes some of the related terminology used 
in the code. Specifically the use of "fast" and "online" with
respect to ALTER TABLE. "Fast" was used to indicate that an
ALTER TABLE operation could be done without involving a
temporary table. "Fast" has been renamed "in-place" to more
accurately describe the behavior.

"Online" meant that the operation could be done without taking
a table lock. However, in the current implementation writes
are always prohibited during ALTER TABLE and an exclusive
metadata lock is held while updating the .frm, so ALTER TABLE
is not completely online. This patch replaces "online" with 
"in-place", with additional comments indicating if concurrent
reads are allowed during index creation/deletion or not.

An important part of this update of terminology is renaming
of the handler flags used by handlers to indicate if index
creation/deletion can be done in-place and if concurrent reads
are allowed. For example, the HA_ONLINE_ADD_INDEX_NO_WRITES
flag has been renamed to HA_INPLACE_ADD_INDEX_NO_READ_WRITE,
while HA_ONLINE_ADD_INDEX is now HA_INPLACE_ADD_INDEX_NO_WRITE.
Note that this is a rename to clarify current behavior, the
flag values have not changed and no flags have been removed or
added.

Test case added to innodb_mysql_sync.test.

Fix backported from to 5.0.
"Remove the alignment option, let valgrind use its default"


mysql-test/mysql-test-run-shell.sh:
  Bug #47811 : remove the non-default alignment specification.
    - backport from 5.1
     "Remove the alignment option, let valgrind use its default"
mysql-test/mysql-test-run.pl:
  Bug #47811 : remove the non-default alignment specification.
    - backport from 5.1
     "Remove the alignment option, let valgrind use its default"