software/slapos-testing: be able to test with more recent python3

See merge request !1457

component/cython/buildout.cfg

@@ -6,4 +6,4 @@ recipe = zc.recipe.egg:custom
 egg = cython
 
 [versions]
-cython = 0.29.24
+cython = 0.29.36

component/openblas/buildout.cfg

@@ -8,8 +8,8 @@ parts =
 [openblas]
 recipe = slapos.recipe.cmmi
 shared = true
-url = https://github.com/xianyi/OpenBLAS/archive/v0.3.10.tar.gz
-md5sum = 4727a1333a380b67c8d7c7787a3d9c9a
+url = https://github.com/OpenMathLib/OpenBLAS/releases/download/v0.3.24/OpenBLAS-0.3.24.tar.gz
+md5sum = 23599a30e4ce887590957d94896789c8
 
 build-common-options = NO_STATIC=1 USE_OPENMP=1 USE_THREAD=1 DYNAMIC_ARCH=1
 

component/scipy/buildout.cfg

@@ -23,6 +23,7 @@ eggs = ${scipy-setup-eggs:eggs}
 
 [scipy-setup-eggs]
 recipe = zc.recipe.egg
+scripts =
 eggs =
   ${cython:egg}
   ${numpy:egg}

component/statsmodels/buildout.cfg

 [buildout]
 extends =
+  ../cython/buildout.cfg
   ../pandas/buildout.cfg
   ../scipy/buildout.cfg
 
@@ -14,5 +15,18 @@ recipe = zc.recipe.egg:custom
 egg = statsmodels
 environment = statsmodels-env
 setup-eggs =
+  ${numpy:egg}
   ${pandas:egg}
   ${scipy:egg}
+  ${cython:egg}
+  setuptools-dso
+statsmodels-patches = ${:_profile_base_location_}/statsmodels-add-setup-version.patch#8bb8eac7375e13fa8104a6aa905ef35c
+statsmodels-patch-options = -p1
+
+[statsmodels:sys.version_info < (3,10)]
+statsmodels-patches =
+statsmodels-patch-options =
+
+[statsmodels:python2]
+statsmodels-patches =
+statsmodels-patch-options =

component/statsmodels/statsmodels-add-setup-version.patch

+add a version to make this package compatible with buildout's easy_install
+
+Fixes this issue:
+
+    Installing statsmodels 0.13.5
+    Caused installation of a distribution:
+    statsmodels 0.0.0
+    with a different version.
+
+
+diff '--color=auto' -ru statsmodels-0.13.5.orig/setup.py statsmodels-0.13.5/setup.py
+--- statsmodels-0.13.5.orig/setup.py	2022-11-02 01:54:20.000000000 +0900
++++ statsmodels-0.13.5/setup.py	2023-10-26 14:12:35.157708043 +0900
+@@ -387,6 +387,7 @@
+ 
+ setup(
+     name=DISTNAME,
++    version='0.13.5',
+     maintainer=MAINTAINER,
+     ext_modules=extensions,
+     maintainer_email=MAINTAINER_EMAIL,

software/slapos-testing/software-py2.cfg

@@ -8,3 +8,6 @@ part = python2.7
 [extra-eggs]
 eggs +=
   ${re6stnet-setup:egg}
+
+[versions]
+pathlib = 1.0.1

software/slapos-testing/software-py3next.cfg

+[buildout]
+extends =
+  software.cfg
+
+[python3]
+<= python3.11

software/slapos-testing/software.cfg

@@ -276,7 +276,6 @@ httmock = 1.2.6
 testfixtures = 6.11.0
 pyflakes = 2.0.0
 zope.testing = 4.6.2
-pathlib = 1.0.1
 psycopg2 = 2.8.6
 iniparse = 0.5
 miniupnpc = 1.9

stack/slapos.cfg

@@ -189,11 +189,11 @@ Flask = 3.0.0:whl
 frozenlist = 1.4.0:whl
 funcsigs = 1.0.2
 functools32 = 3.2.3.post2
-gevent = 20.9.0
+gevent = 23.9.1
 geventmp = 0.0.1
 gitdb = 4.0.10
 GitPython = 3.1.30
-greenlet = 0.4.17
+greenlet = 3.0.1
 h11 = 0.14.0
 h5py = 2.7.1
 idna = 3.4:whl
@@ -231,7 +231,7 @@ mistune = 0.8.4
 mock = 3.0.5
 more-itertools = 5.0.0
 mpmath = 1.0.0
-msgpack = 0.6.2
+msgpack = 1.0.5
 multidict = 6.0.4
 nbclient = 0.5.1
 nbconvert = 6.5.4
@@ -248,7 +248,7 @@ paramiko = 2.11.0
 parso = 0.7.1
 passlib = 1.7.4
 pathlib2 = 2.3.5
-patsy = 0.5.1
+patsy = 0.5.3
 pbr = 5.9.0
 pexpect = 4.8.0
 pickleshare = 0.7.4
@@ -267,7 +267,7 @@ py = 1.11.0:whl
 py-mld = 1.0.3
 pyasn1 = 0.4.5
 pycparser = 2.20
-pycurl = 7.43.0
+pycurl = 7.45.0
 pydantic = 1.9.1
 pygls = 1.1.0:whl
 Pygments = 2.9.0
@@ -294,7 +294,7 @@ scikit-learn = 0.20.4
 seaborn = 0.7.1
 Send2Trash = 1.5.0
 setproctitle = 1.1.10
-setuptools-dso = 1.7
+setuptools-dso = 2.9
 sgmllib3k = 1.0.0
 simplegeneric = 0.8.1
 singledispatch = 3.4.0.3
@@ -312,7 +312,7 @@ smmap = 5.0.0
 sniffio = 1.3.0
 sortedcontainers = 2.4.0
 soupsieve = 1.9.5
-statsmodels = 0.11.1
+statsmodels = 0.13.5+SlapOSPatched001
 stevedore = 1.21.0:whl
 subprocess32 = 3.5.4
 supervisor = 4.1.0
@@ -328,7 +328,7 @@ typeguard = 3.0.2:whl
 typing-extensions = 4.8.0:whl
 tzlocal = 1.5.1
 unicodecsv = 0.14.1
-uritemplate = 3.0.0
+uritemplate = 4.1.1
 urllib3 = 1.26.12
 wcwidth = 0.2.5
 webencodings = 0.5.1
@@ -353,6 +353,10 @@ zope.interface = 5.4.0
 zope.testing = 4.7
 zope.testrunner = 5.2
 
+[versions:sys.version_info < (3,10)]
+# keep old statsmodels by default until slapos.toolbox is updated
+statsmodels = 0.11.1
+
 # this is mostly needed for slapos-node
 # it can be removed when slapos-node uses current python3
 [versions:sys.version_info < (3,8)]
@@ -369,15 +373,19 @@ click = 6.7
 distro = 1.6.0
 feedparser = 5.2.1
 Flask = 1.1.2
+gevent = 20.9.0
 gitdb2 = 2.0.5
 GitPython = 2.1.11
+greenlet = 0.4.17
 idna = 2.9
 importlib-metadata = 1.7.0:whl
 itsdangerous = 0.24
 Jinja2 = 2.11.3
 jsonschema = 3.0.2:whl
 MarkupSafe = 1.0
+msgpack = 0.6.2
 packaging = 16.8
+pycurl = 7.43.0
 pyparsing = 2.2.0
 pyrsistent = 0.16.1
 requests = 2.27.1
@@ -385,7 +393,9 @@ selectors34 = 1.2
 slapos.toolbox = 0.128.1
 smmap = 0.9.0
 smmap2 = 2.0.5
+statsmodels = 0.11.1
 traitlets = 4.3.3
+uritemplate = 3.0.0
 Werkzeug = 1.0.1
 wheel = 0.35.1:whl
 zipp = 1.2.0:whl