Merge remote-tracking branch 'upstream/master' into ce-to-ee-2017-10-27

* upstream/master: (72 commits)
  Avoid using Rugged in Gitlab::Git::Wiki#preview_slug
  Cache commits on the repository model
  Remove groups_select from global namespace & simplifies the code
  Change default disabled merge request widget message to "Merge is not allowed yet"
  Semi-linear history merge is now available in CE.
  Remove repetitive karma spec
  Improve spec to check hidden component
  Rename to shouldShowUsername
  Add KubernetesService#default_namespace tests
  Revert "Merge branch '36670-remove-edit-form' into 'master'"
  Fix bitbucket login
  Remove duped tests
  Add path attribute to WikiFile class
  Make local_branches OPT_OUT
  Clarify the language around External Group membership with SAML SSO to clarify that this will NOT add users to GitLab Groups.
  Added ssh fingerprint, gitlab ci and pages information in an instance configuration page
  Fix the incorrect value being used to set GL_USERNAME on hooks
  Resolve "Remove overzealous tooltips in projects page tabs"
  Fix broken table of content links
  Remove filter icon from search bar
  ...

CONTRIBUTING.md

@@ -21,10 +21,10 @@ _This notice should stay as the first item in the CONTRIBUTING.md file._
 - [Workflow labels](#workflow-labels)
   - [Type labels (~"feature proposal", ~bug, ~customer, etc.)](#type-labels-feature-proposal-bug-customer-etc)
   - [Subject labels (~wiki, ~"container registry", ~ldap, ~api, etc.)](#subject-labels-wiki-container-registry-ldap-api-etc)
-  - [Team labels (~"CI/CD", ~Discussion, ~Edge, ~Platform, etc.)](#team-labels-ci-discussion-edge-platform-etc)
+  - [Team labels (~"CI/CD", ~Discussion, ~Edge, ~Platform, etc.)](#team-labels-cicd-discussion-edge-platform-etc)
   - [Priority labels (~Deliverable and ~Stretch)](#priority-labels-deliverable-and-stretch)
   - [Label for community contributors (~"Accepting Merge Requests")](#label-for-community-contributors-accepting-merge-requests)
-- [Implement design & UI elements](#implement-design--ui-elements)
+- [Implement design & UI elements](#implement-design-ui-elements)
 - [Issue tracker](#issue-tracker)
   - [Issue triaging](#issue-triaging)
   - [Feature proposals](#feature-proposals)

Gemfile

@@ -414,7 +414,7 @@ group :ed25519 do
 end
 
 # Gitaly GRPC client
-gem 'gitaly-proto', '~> 0.45.0', require: 'gitaly'
+gem 'gitaly-proto', '~> 0.48.0', require: 'gitaly'
 
 gem 'toml-rb', '~> 0.3.15', require: false
 

Gemfile.lock

@@ -297,7 +297,7 @@ GEM
       po_to_json (>= 1.0.0)
       rails (>= 3.2.0)
     gherkin-ruby (0.3.2)
-    gitaly-proto (0.45.0)
+    gitaly-proto (0.48.0)
       google-protobuf (~> 3.1)
       grpc (~> 1.0)
     github-linguist (4.7.6)
@@ -1065,7 +1065,7 @@ DEPENDENCIES
   gettext (~> 3.2.2)
   gettext_i18n_rails (~> 1.8.0)
   gettext_i18n_rails_js (~> 1.2.0)
-  gitaly-proto (~> 0.45.0)
+  gitaly-proto (~> 0.48.0)
   github-linguist (~> 4.7.0)
   gitlab-flowdock-git-hook (~> 1.0.1)
   gitlab-license (~> 1.0)

app/assets/javascripts/dispatcher.js

@@ -265,7 +265,8 @@ import initGroupAnalytics from './init_group_analytics';
           break;
         case 'projects:compare:show':
           new Diff();
-          initChangesDropdown();
+          const paddingTop = 16;
+          initChangesDropdown(document.querySelector('.navbar-gitlab').offsetHeight - paddingTop);
           break;
         case 'projects:branches:new':
         case 'projects:branches:create':

app/assets/javascripts/init_changes_dropdown.js

 import stickyMonitor from './lib/utils/sticky';
 
-export default () => {
-  stickyMonitor(document.querySelector('.js-diff-files-changed'));
+export default (stickyTop) => {
+  stickyMonitor(document.querySelector('.js-diff-files-changed'), stickyTop);
 
   $('.js-diff-stats-dropdown').glDropdown({
     filterable: true,

app/assets/javascripts/lib/utils/sticky.js

@@ -28,14 +28,10 @@ export const isSticky = (el, scrollY, stickyTop, insertPlaceholder) => {
   }
 };
 
-export default (el, insertPlaceholder = true) => {
+export default (el, stickyTop, insertPlaceholder = true) => {
   if (!el) return;
 
-  const computedStyle = window.getComputedStyle(el);
-
-  if (!/sticky/.test(computedStyle.position)) return;
-
-  const stickyTop = parseInt(computedStyle.top, 10);
+  if (typeof CSS === 'undefined' || !(CSS.supports('(position: -webkit-sticky) or (position: sticky)'))) return;
 
   document.addEventListener('scroll', () => isSticky(el, window.scrollY, stickyTop, insertPlaceholder), {
     passive: true,

app/assets/javascripts/merge_request_tabs.js

@@ -67,6 +67,10 @@ import Diff from './diff';
   class MergeRequestTabs {
 
     constructor({ action, setUrl, stubLocation } = {}) {
+      const mergeRequestTabs = document.querySelector('.js-tabs-affix');
+      const navbar = document.querySelector('.navbar-gitlab');
+      const paddingTop = 16;
+
       this.diffsLoaded = false;
       this.pipelinesLoaded = false;
       this.commitsLoaded = false;
@@ -76,6 +80,11 @@ import Diff from './diff';
       this.setCurrentAction = this.setCurrentAction.bind(this);
       this.tabShown = this.tabShown.bind(this);
       this.showTab = this.showTab.bind(this);
+      this.stickyTop = navbar ? navbar.offsetHeight - paddingTop : 0;
+
+      if (mergeRequestTabs) {
+        this.stickyTop += mergeRequestTabs.offsetHeight;
+      }
 
       if (stubLocation) {
         location = stubLocation;
@@ -278,7 +287,7 @@ import Diff from './diff';
           const $container = $('#diffs');
           $container.html(data.html);
 
-          initChangesDropdown();
+          initChangesDropdown(this.stickyTop);
 
           if (typeof gl.diffNotesCompileComponents !== 'undefined') {
             gl.diffNotesCompileComponents();

app/assets/javascripts/notes/components/issue_discussion.vue

@@ -9,8 +9,8 @@
   import issueNoteSignedOutWidget from './issue_note_signed_out_widget.vue';
   import issueNoteEditedText from './issue_note_edited_text.vue';
   import issueNoteForm from './issue_note_form.vue';
-  import placeholderNote from './issue_placeholder_note.vue';
-  import placeholderSystemNote from './issue_placeholder_system_note.vue';
+  import placeholderNote from '../../vue_shared/components/notes/placeholder_note.vue';
+  import placeholderSystemNote from '../../vue_shared/components/notes/placeholder_system_note.vue';
   import autosave from '../mixins/autosave';
 
   export default {

app/assets/javascripts/notes/components/issue_notes_app.vue

@@ -5,10 +5,10 @@
   import * as constants from '../constants';
   import issueNote from './issue_note.vue';
   import issueDiscussion from './issue_discussion.vue';
-  import issueSystemNote from './issue_system_note.vue';
+  import systemNote from '../../vue_shared/components/notes/system_note.vue';
   import issueCommentForm from './issue_comment_form.vue';
-  import placeholderNote from './issue_placeholder_note.vue';
-  import placeholderSystemNote from './issue_placeholder_system_note.vue';
+  import placeholderNote from '../../vue_shared/components/notes/placeholder_note.vue';
+  import placeholderSystemNote from '../../vue_shared/components/notes/placeholder_system_note.vue';
   import loadingIcon from '../../vue_shared/components/loading_icon.vue';
 
   export default {
@@ -37,7 +37,7 @@
     components: {
       issueNote,
       issueDiscussion,
-      issueSystemNote,
+      systemNote,
       issueCommentForm,
       loadingIcon,
       placeholderNote,
@@ -68,7 +68,7 @@
           }
           return placeholderNote;
         } else if (note.individual_note) {
-          return note.notes[0].system ? issueSystemNote : issueNote;
+          return note.notes[0].system ? systemNote : issueNote;
         }
 
         return issueDiscussion;

app/assets/javascripts/repo/components/new_dropdown/index.vue

+<script>
+  import RepoStore from '../../stores/repo_store';
+  import RepoHelper from '../../helpers/repo_helper';
+  import eventHub from '../../event_hub';
+  import newModal from './modal.vue';
+
+  export default {
+    components: {
+      newModal,
+    },
+    data() {
+      return {
+        openModal: false,
+        modalType: '',
+        currentPath: RepoStore.path,
+      };
+    },
+    methods: {
+      createNewItem(type) {
+        this.modalType = type;
+        this.toggleModalOpen();
+      },
+      toggleModalOpen() {
+        this.openModal = !this.openModal;
+      },
+      createNewEntryInStore(name, type) {
+        RepoHelper.createNewEntry(name, type);
+
+        this.toggleModalOpen();
+      },
+    },
+    created() {
+      eventHub.$on('createNewEntry', this.createNewEntryInStore);
+    },
+    beforeDestroy() {
+      eventHub.$off('createNewEntry', this.createNewEntryInStore);
+    },
+  };
+</script>
+
+<template>
+  <div>
+    <ul class="breadcrumb repo-breadcrumb">
+      <li class="dropdown">
+        <button
+          type="button"
+          class="btn btn-default dropdown-toggle add-to-tree"
+          data-toggle="dropdown"
+          aria-label="Create new file or directory"
+        >
+          <i
+            class="fa fa-plus"
+            aria-hidden="true"
+          >
+          </i>
+        </button>
+        <ul class="dropdown-menu">
+          <li>
+            <a
+              href="#"
+              role="button"
+              @click.prevent="createNewItem('blob')"
+            >
+              {{ __('New file') }}
+            </a>
+          </li>
+          <li>
+            <a
+              href="#"
+              role="button"
+              @click.prevent="createNewItem('tree')"
+            >
+              {{ __('New directory') }}
+            </a>
+          </li>
+        </ul>
+      </li>
+    </ul>
+    <new-modal
+      v-if="openModal"
+      :type="modalType"
+      :current-path="currentPath"
+      @toggle="toggleModalOpen"
+    />
+  </div>
+</template>

app/assets/javascripts/repo/components/new_dropdown/modal.vue

+<script>
+  import { __ } from '../../../locale';
+  import popupDialog from '../../../vue_shared/components/popup_dialog.vue';
+  import eventHub from '../../event_hub';
+
+  export default {
+    props: {
+      currentPath: {
+        type: String,
+        required: true,
+      },
+      type: {
+        type: String,
+        required: true,
+      },
+    },
+    data() {
+      return {
+        entryName: this.currentPath !== '' ? `${this.currentPath}/` : '',
+      };
+    },
+    components: {
+      popupDialog,
+    },
+    methods: {
+      createEntryInStore() {
+        eventHub.$emit('createNewEntry', this.entryName, this.type);
+      },
+      toggleModalOpen() {
+        this.$emit('toggle');
+      },
+    },
+    computed: {
+      modalTitle() {
+        if (this.type === 'tree') {
+          return __('Create new directory');
+        }
+
+        return __('Create new file');
+      },
+      buttonLabel() {
+        if (this.type === 'tree') {
+          return __('Create directory');
+        }
+
+        return __('Create file');
+      },
+      formLabelName() {
+        if (this.type === 'tree') {
+          return __('Directory name');
+        }
+
+        return __('File name');
+      },
+    },
+    mounted() {
+      this.$refs.fieldName.focus();
+    },
+  };
+</script>
+
+<template>
+  <popup-dialog
+    :title="modalTitle"
+    :primary-button-label="buttonLabel"
+    kind="success"
+    @toggle="toggleModalOpen"
+    @submit="createEntryInStore"
+  >
+    <form
+      class="form-horizontal"
+      slot="body"
+      @submit.prevent="createEntryInStore"
+    >
+      <fieldset class="form-group append-bottom-0">
+        <label class="label-light col-sm-3">
+          {{ formLabelName }}
+        </label>
+        <div class="col-sm-9">
+          <input
+            type="text"
+            class="form-control"
+            v-model="entryName"
+            ref="fieldName"
+          />
+        </div>
+      </fieldset>
+    </form>
+  </popup-dialog>
+</template>

app/assets/javascripts/repo/components/repo.vue

@@ -46,6 +46,10 @@ export default {
     dialogSubmitted(status) {
       this.toggleDialogOpen(false);
       this.dialog.status = status;
+
+      // remove tmp files
+      Helper.removeAllTmpFiles('openedFiles');
+      Helper.removeAllTmpFiles('files');
     },
     toggleBlobView: Store.toggleBlobView,
     createNewBranch(branch) {

app/assets/javascripts/repo/components/repo_commit_section.vue

@@ -49,7 +49,7 @@ export default {
       // see https://docs.gitlab.com/ce/api/commits.html#create-a-commit-with-multiple-files-and-actions
       const commitMessage = this.commitMessage;
       const actions = this.changedFiles.map(f => ({
-        action: 'update',
+        action: f.tempFile ? 'create' : 'update',
         file_path: f.path,
         content: f.newContent,
       }));
@@ -62,7 +62,6 @@ export default {
       if (newBranch) {
         payload.start_branch = this.currentBranch;
       }
-      this.submitCommitsLoading = true;
       Service.commitFiles(payload)
         .then(() => {
           this.resetCommitState();
@@ -78,6 +77,8 @@ export default {
     },
 
     tryCommit(e, skipBranchCheck = false, newBranch = false) {
+      this.submitCommitsLoading = true;
+
       if (skipBranchCheck) {
         this.makeCommit(newBranch);
       } else {
@@ -90,6 +91,7 @@ export default {
             this.makeCommit(newBranch);
           })
           .catch(() => {
+            this.submitCommitsLoading = false;
             Flash('An error occurred while committing your changes');
           });
       }

app/assets/javascripts/repo/components/repo_editor.vue

@@ -16,7 +16,7 @@ const RepoEditor = {
   },
 
   mounted() {
-    Service.getRaw(this.activeFile.raw_path)
+    Service.getRaw(this.activeFile)
       .then((rawResponse) => {
         Store.blobRaw = rawResponse.data;
         Store.activeFile.plain = rawResponse.data;

app/assets/javascripts/repo/components/repo_file_buttons.vue

@@ -11,7 +11,12 @@ const RepoFileButtons = {
   mixins: [RepoMixin],
 
   computed: {
-
+    showButtons() {
+      return this.activeFile.raw_path ||
+        this.activeFile.blame_path ||
+        this.activeFile.commits_path ||
+        this.activeFile.permalink;
+    },
     rawDownloadButtonLabel() {
       return this.binary ? 'Download' : 'Raw';
     },
@@ -30,7 +35,10 @@ export default RepoFileButtons;
 </script>
 
 <template>
-  <div id="repo-file-buttons">
+  <div
+    v-if="showButtons"
+    class="repo-file-buttons"
+  >
     <a
       :href="activeFile.raw_path"
       target="_blank"

app/assets/javascripts/repo/components/repo_tab.vue

@@ -18,8 +18,8 @@ const RepoTab = {
     },
     changedClass() {
       const tabChangedObj = {
-        'fa-times close-icon': !this.tab.changed,
-        'fa-circle unsaved-icon': this.tab.changed,
+        'fa-times close-icon': !this.tab.changed && !this.tab.tempFile,
+        'fa-circle unsaved-icon': this.tab.changed || this.tab.tempFile,
       };
       return tabChangedObj;
     },
@@ -30,7 +30,7 @@ const RepoTab = {
       Store.setActiveFiles(file);
     },
     closeTab(file) {
-      if (file.changed) return;
+      if (file.changed || file.tempFile) return;
 
       Store.removeFromOpenedFiles(file);
     },

app/assets/javascripts/repo/helpers/repo_helper.js

-import { convertPermissionToBoolean } from '../../lib/utils/common_utils';
 import Service from '../services/repo_service';
 import Store from '../stores/repo_store';
 import Flash from '../../flash';
@@ -8,6 +7,7 @@ const RepoHelper = {
 
   getDefaultActiveFile() {
     return {
+      id: '',
       active: true,
       binary: false,
       extension: '',
@@ -62,6 +62,7 @@ const RepoHelper = {
     });
 
     RepoHelper.updateHistoryEntry(tree.url, title);
+    Store.path = tree.path;
   },
 
   setDirectoryToClosed(entry) {
@@ -96,8 +97,8 @@ const RepoHelper = {
     .then((response) => {
       const data = response.data;
       if (response.headers && response.headers['page-title']) data.pageTitle = decodeURI(response.headers['page-title']);
-      if (response.headers && response.headers['is-root'] && !Store.isInitialRoot) {
-        Store.isRoot = convertPermissionToBoolean(response.headers['is-root']);
+      if (data.path && !Store.isInitialRoot) {
+        Store.isRoot = data.path === '/';
         Store.isInitialRoot = Store.isRoot;
       }
 
@@ -110,7 +111,7 @@ const RepoHelper = {
           RepoHelper.setBinaryDataAsBase64(data);
           Store.setViewToPreview();
         } else if (!Store.isPreviewView() && !data.render_error) {
-          Service.getRaw(data.raw_path)
+          Service.getRaw(data)
           .then((rawResponse) => {
             Store.blobRaw = rawResponse.data;
             data.plain = rawResponse.data;
@@ -138,6 +139,10 @@ const RepoHelper = {
 
   addToDirectory(file, data) {
     const tree = file || Store;
+
+    // TODO: Figure out why `popstate` is being trigger in the specs
+    if (!tree.files) return;
+
     const files = tree.files.concat(this.dataToListOfFiles(data, file ? file.level + 1 : 0));
 
     tree.files = files;
@@ -157,7 +162,18 @@ const RepoHelper = {
   },
 
   serializeRepoEntity(type, entity, level = 0) {
-    const { id, url, name, icon, last_commit, tree_url } = entity;
+    const {
+      id,
+      url,
+      name,
+      icon,
+      last_commit,
+      tree_url,
+      path,
+      tempFile,
+      active,
+      opened,
+    } = entity;
 
     return {
       id,
@@ -165,11 +181,14 @@ const RepoHelper = {
       name,
       url,
       tree_url,
+      path,
       level,
+      tempFile,
       icon: `fa-${icon}`,
       files: [],
       loading: false,
-      opened: false,
+      opened,
+      active,
       // eslint-disable-next-line camelcase
       lastCommit: last_commit ? {
         url: `${Store.projectUrl}/commit/${last_commit.id}`,
@@ -213,7 +232,7 @@ const RepoHelper = {
   },
 
   findOpenedFileFromActive() {
-    return Store.openedFiles.find(openedFile => Store.activeFile.url === openedFile.url);
+    return Store.openedFiles.find(openedFile => Store.activeFile.id === openedFile.id);
   },
 
   getFileFromPath(path) {
@@ -223,6 +242,76 @@ const RepoHelper = {
   loadingError() {
     Flash('Unable to load this content at this time.');
   },
+  openEditMode() {
+    Store.editMode = true;
+    Store.currentBlobView = 'repo-editor';
+  },
+  updateStorePath(path) {
+    Store.path = path;
+  },
+  findOrCreateEntry(type, tree, name) {
+    let exists = true;
+    let foundEntry = tree.files.find(dir => dir.type === type && dir.name === name);
+
+    if (!foundEntry) {
+      foundEntry = RepoHelper.serializeRepoEntity(type, {
+        id: name,
+        name,
+        path: tree.path ? `${tree.path}/${name}` : name,
+        icon: type === 'tree' ? 'folder' : 'file-text-o',
+        tempFile: true,
+        opened: true,
+        active: true,
+      }, tree.level !== undefined ? tree.level + 1 : 0);
+
+      exists = false;
+      tree.files.push(foundEntry);
+    }
+
+    return {
+      entry: foundEntry,
+      exists,
+    };
+  },
+  removeAllTmpFiles(storeFilesKey) {
+    Store[storeFilesKey] = Store[storeFilesKey].filter(f => !f.tempFile);
+  },
+  createNewEntry(name, type) {
+    const originalPath = Store.path;
+    let entryName = name;
+
+    if (entryName.indexOf(`${originalPath}/`) !== 0) {
+      this.updateStorePath('');
+    } else {
+      entryName = entryName.replace(`${originalPath}/`, '');
+    }
+
+    if (entryName === '') return;
+
+    const fileName = type === 'tree' ? '.gitkeep' : entryName;
+    let tree = Store;
+
+    if (type === 'tree') {
+      const dirNames = entryName.split('/');
+
+      dirNames.forEach((dirName) => {
+        if (dirName === '') return;
+
+        tree = this.findOrCreateEntry('tree', tree, dirName).entry;
+      });
+    }
+
+    if ((type === 'tree' && tree.tempFile) || type === 'blob') {
+      const file = this.findOrCreateEntry('blob', tree, fileName);
+
+      if (!file.exists) {
+        this.setFile(file.entry, file.entry);
+        this.openEditMode();
+      }
+    }
+
+    this.updateStorePath(originalPath);
+  },
 };
 
 export default RepoHelper;

app/assets/javascripts/repo/index.js

@@ -6,6 +6,7 @@ import Store from './stores/repo_store';
 import Repo from './components/repo.vue';
 import RepoEditButton from './components/repo_edit_button.vue';
 import newBranchForm from './components/new_branch_form.vue';
+import newDropdown from './components/new_dropdown/index.vue';
 import Translate from '../vue_shared/translate';
 
 function initDropdowns() {
@@ -28,6 +29,7 @@ function setInitialStore(data) {
   Store.service = Service;
   Store.service.url = data.url;
   Store.service.refsUrl = data.refsUrl;
+  Store.path = data.currentPath;
   Store.projectId = data.projectId;
   Store.projectName = data.projectName;
   Store.projectUrl = data.projectUrl;
@@ -63,6 +65,18 @@ function initRepoEditButton(el) {
   });
 }
 
+function initNewDropdown(el) {
+  return new Vue({
+    el,
+    components: {
+      newDropdown,
+    },
+    render(createElement) {
+      return createElement('new-dropdown');
+    },
+  });
+}
+
 function initNewBranchForm() {
   const el = document.querySelector('.js-new-branch-dropdown');
 
@@ -86,6 +100,7 @@ function initNewBranchForm() {
 function initRepoBundle() {
   const repo = document.getElementById('repo');
   const editButton = document.querySelector('.editable-mode');
+  const newDropdownHolder = document.querySelector('.js-new-dropdown');
   setInitialStore(repo.dataset);
   addEventsForNonVueEls();
   initDropdowns();
@@ -95,6 +110,7 @@ function initRepoBundle() {
   initRepo(repo);
   initRepoEditButton(editButton);
   initNewBranchForm();
+  initNewDropdown(newDropdownHolder);
 }
 
 $(initRepoBundle);

app/assets/javascripts/repo/mixins/repo_mixin.js

@@ -8,7 +8,7 @@ const RepoMixin = {
 
     changedFiles() {
       const changedFileList = this.openedFiles
-      .filter(file => file.changed);
+        .filter(file => file.changed || file.tempFile);
       return changedFileList;
     },
   },

app/assets/javascripts/repo/services/repo_service.js

@@ -16,8 +16,14 @@ const RepoService = {
   createBranchPath: '/api/:version/projects/:id/repository/branches',
   richExtensionRegExp: /md/,
 
-  getRaw(url) {
-    return axios.get(url, {
+  getRaw(file) {
+    if (file.tempFile) {
+      return Promise.resolve({
+        data: '',
+      });
+    }
+
+    return axios.get(file.raw_path, {
       // Stop Axios from parsing a JSON file into a JS object
       transformResponse: [res => res],
     });

app/assets/javascripts/repo/stores/repo_store.js

@@ -39,6 +39,7 @@ const RepoStore = {
   newMrTemplateUrl: '',
   branchChanged: false,
   commitMessage: '',
+  path: '',
   loading: {
     tree: false,
     blob: false,
@@ -77,21 +78,23 @@ const RepoStore = {
     } else if (file.newContent || file.plain) {
       RepoStore.blobRaw = file.newContent || file.plain;
     } else {
-      Service.getRaw(file.raw_path)
+      Service.getRaw(file)
         .then((rawResponse) => {
           RepoStore.blobRaw = rawResponse.data;
           Helper.findOpenedFileFromActive().plain = rawResponse.data;
         }).catch(Helper.loadingError);
     }
 
-    if (!file.loading) Helper.updateHistoryEntry(file.url, file.pageTitle || file.name);
+    if (!file.loading && !file.tempFile) {
+      Helper.updateHistoryEntry(file.url, file.pageTitle || file.name);
+    }
     RepoStore.binary = file.binary;
     RepoStore.setActiveLine(-1);
   },
 
   setFileActivity(file, openedFile, i) {
     const activeFile = openedFile;
-    activeFile.active = file.url === activeFile.url;
+    activeFile.active = file.id === activeFile.id;
 
     if (activeFile.active) RepoStore.setActiveFile(activeFile, i);
 
@@ -99,7 +102,7 @@ const RepoStore = {
   },
 
   setActiveFile(activeFile, i) {
-    RepoStore.activeFile = Object.assign({}, RepoStore.activeFile, activeFile);
+    RepoStore.activeFile = Object.assign({}, Helper.getDefaultActiveFile(), activeFile);
     RepoStore.activeFileIndex = i;
   },
 
@@ -121,6 +124,11 @@ const RepoStore = {
       return openedFile.path !== file.path;
     });
 
+    // remove the file from the sidebar if it is a tempFile
+    if (file.tempFile) {
+      RepoStore.files = RepoStore.files.filter(f => !(f.tempFile && f.path === file.path));
+    }
+
     // now activate the right tab based on what you closed.
     if (RepoStore.openedFiles.length === 0) {
       RepoStore.activeFile = {};
@@ -170,7 +178,7 @@ const RepoStore = {
   // getters
 
   isActiveFile(file) {
-    return file && file.url === RepoStore.activeFile.url;
+    return file && file.id === RepoStore.activeFile.id;
   },
 
   isPreviewView() {

app/assets/javascripts/notes/components/issue_placeholder_note.vue → app/assets/javascripts/vue_shared/components/notes/placeholder_note.vue

 <script>
+  /**
+   * Common component to render a placeholder note and user information.
+   *
+   * This component needs to be used with a vuex store.
+   * That vuex store needs to have a `getUserData` getter that contains
+   * {
+   *   path: String,
+   *   avatar_url: String,
+   *   name: String,
+   *   username: String,
+   * }
+   *
+   * @example
+   * <placeholder-note
+   *   :note="{body: 'This is a note'}"
+   *   />
+   */
   import { mapGetters } from 'vuex';
-  import userAvatarLink from '../../vue_shared/components/user_avatar/user_avatar_link.vue';
+  import userAvatarLink from '../user_avatar/user_avatar_link.vue';
 
   export default {
-    name: 'issuePlaceholderNote',
+    name: 'placeholderNote',
     props: {
       note: {
         type: Object,

app/assets/javascripts/notes/components/issue_placeholder_system_note.vue → app/assets/javascripts/vue_shared/components/notes/placeholder_system_note.vue

 <script>
+  /**
+   * Common component to render a placeholder system note.
+   *
+   * @example
+   * <placeholder-system-note
+   *  :note="{ body: 'Commands are being applied'}"
+   *  />
+   */
   export default {
     name: 'placeholderSystemNote',
     props: {

app/assets/javascripts/notes/components/issue_system_note.vue → app/assets/javascripts/vue_shared/components/notes/system_note.vue

 <script>
+  /**
+   * Common component to render a system note, icon and user information.
+   *
+   * This component needs to be used with a vuex store.
+   * That vuex store needs to have a `targetNoteHash` getter
+   *
+   * @example
+   * <system-note
+   *   :note="{
+   *     id: String,
+   *     author: Object,
+   *     createdAt: String,
+   *     note_html: String,
+   *     system_note_icon_name: String
+   *    }"
+   *   />
+   */
   import { mapGetters } from 'vuex';
-  import issueNoteHeader from './issue_note_header.vue';
+  import issueNoteHeader from '../../../notes/components/issue_note_header.vue';
+  import { spriteIcon } from '../../../lib/utils/common_utils';
 
   export default {
     name: 'systemNote',
@@ -24,7 +42,7 @@
         return this.targetNoteHash === this.noteAnchorId;
       },
       iconHtml() {
-        return gl.utils.spriteIcon(this.note.system_note_icon_name);
+        return spriteIcon(this.note.system_note_icon_name);
       },
     },
   };
@@ -46,7 +64,8 @@
             :author="note.author"
             :created-at="note.created_at"
             :note-id="note.id"
-            :action-text-html="note.note_html" />
+            :action-text-html="note.note_html"
+            />
         </div>
       </div>
     </div>

app/assets/javascripts/vue_shared/components/popup_dialog.vue

@@ -9,7 +9,7 @@ export default {
     },
     text: {
       type: String,
-      required: true,
+      required: false,
     },
     kind: {
       type: String,
@@ -82,14 +82,15 @@ export default {
           type="button"
           class="btn"
           :class="btnCancelKindClass"
-          @click="emitSubmit(false)">
-            {{closeButtonLabel}}
+          @click="close">
+          {{ closeButtonLabel }}
         </button>
-        <button type="button"
+        <button
+          type="button"
           class="btn"
           :class="btnKindClass"
           @click="emitSubmit(true)">
-            {{primaryButtonLabel}}
+          {{ primaryButtonLabel }}
         </button>
       </div>
     </div>

app/assets/javascripts/vue_shared/components/user_avatar/user_avatar_link.vue

@@ -12,12 +12,14 @@
     :img-alt="tooltipText"
     :img-size="20"
     :tooltip-text="tooltipText"
-    tooltip-placement="top"
+    :tooltip-placement="top"
+    :username="username"
   />
 
 */
 
 import userAvatarImage from './user_avatar_image.vue';
+import tooltip from '../../directives/tooltip';
 
 export default {
   name: 'UserAvatarLink',
@@ -60,6 +62,22 @@ export default {
       required: false,
       default: 'top',
     },
+    username: {
+      type: String,
+      required: false,
+      default: '',
+    },
+  },
+  computed: {
+    shouldShowUsername() {
+      return this.username.length > 0;
+    },
+    avatarTooltipText() {
+      return this.shouldShowUsername ? '' : this.tooltipText;
+    },
+  },
+  directives: {
+    tooltip,
   },
 };
 </script>
@@ -73,8 +91,13 @@ export default {
       :img-alt="imgAlt"
       :css-classes="imgCssClasses"
       :size="imgSize"
-      :tooltip-text="tooltipText"
+      :tooltip-text="avatarTooltipText"
+      :tooltip-placement="tooltipPlacement"
+    /><span
+      v-if="shouldShowUsername"
+      v-tooltip
+      :title="tooltipText"
       :tooltip-placement="tooltipPlacement"
-    />
+    >{{username}}</span>
   </a>
 </template>

app/assets/stylesheets/framework/filters.scss

@@ -65,7 +65,7 @@
     display: flex;
     flex: 1;
     -webkit-flex: 1;
-    padding-left: 30px;
+    padding-left: 12px;
     position: relative;
     margin-bottom: 0;
   }
@@ -221,10 +221,6 @@
     box-shadow: 0 0 4px $search-input-focus-shadow-color;
   }
 
-  &.focus .fa-filter {
-    color: $common-gray-dark;
-  }
-
   gl-emoji {
     display: inline-block;
     font-family: inherit;
@@ -251,13 +247,6 @@
     }
   }
 
-  .fa-filter {
-    position: absolute;
-    top: 10px;
-    left: 10px;
-    color: $gray-darkest;
-  }
-
   .fa-times {
     right: 10px;
     color: $gray-darkest;

app/assets/stylesheets/pages/boards.scss

@@ -456,6 +456,7 @@
   margin: 5px;
 }
 
+<<<<<<< HEAD
 .boards-title-holder {
   padding: 25px 13px $gl-padding;
 
@@ -476,6 +477,8 @@
   border-top: 1px solid $border-color;
 }
 
+=======
+>>>>>>> upstream/master
 .page-with-contextual-sidebar.page-with-sidebar .issue-boards-sidebar {
   .issuable-sidebar-header {
     position: relative;

app/assets/stylesheets/pages/note_form.scss

@@ -249,13 +249,12 @@
       width: 100%;
       padding-right: 5px;
     }
-
   }
 
   .discussion-actions {
     display: table;
 
-    .new-issue-for-discussion path {
+    .btn-default path {
       fill: $gray-darkest;
     }
 

app/assets/stylesheets/pages/notes.scss

@@ -466,6 +466,10 @@ ul.notes {
   float: right;
   margin-left: 10px;
   color: $gray-darkest;
+
+  .btn-group > .discussion-next-btn {
+    margin-left: -1px;
+  }
 }
 
 .note-actions {

app/assets/stylesheets/pages/repo.scss

@@ -201,7 +201,7 @@
       }
     }
 
-    #repo-file-buttons {
+    .repo-file-buttons {
       background-color: $white-light;
       padding: 5px 10px;
       border-top: 1px solid $white-normal;

app/controllers/help_controller.rb

@@ -57,6 +57,10 @@ class HelpController < ApplicationController
   def shortcuts
   end
 
+  def instance_configuration
+    @instance_configuration = InstanceConfiguration.new
+  end
+
   def ui
     @user = User.new(id: 0, name: 'John Doe', username: '@johndoe')
   end

app/controllers/projects/blob_controller.rb

@@ -205,6 +205,7 @@ class Projects::BlobController < Projects::ApplicationController
     tree_path = path_segments.join('/')
 
     render json: json.merge(
+      id: @blob.id,
       path: blob.path,
       name: blob.name,
       extension: blob.extension,

app/controllers/projects/tree_controller.rb

@@ -36,7 +36,6 @@ class Projects::TreeController < Projects::ApplicationController
 
       format.json do
         page_title @path.presence || _("Files"), @ref, @project.name_with_namespace
-        response.header['is-root'] = @path.empty?
 
         # n+1: https://gitlab.com/gitlab-org/gitlab-ce/issues/38261
         Gitlab::GitalyClient.allow_n_plus_1_calls do

app/finders/branches_finder.rb

@@ -23,7 +23,7 @@ class BranchesFinder
 
   def filter_by_name(branches)
     if search
-      branches.select { |branch| branch.name.include?(search) }
+      branches.select { |branch| branch.name.upcase.include?(search.upcase) }
     else
       branches
     end

app/helpers/instance_configuration_helper.rb

+module InstanceConfigurationHelper
+  def instance_configuration_cell_html(value, &block)
+    return '-' unless value.to_s.presence
+
+    block_given? ? yield(value) : value
+  end
+
+  def instance_configuration_host(host)
+    @instance_configuration_host ||= instance_configuration_cell_html(host).capitalize
+  end
+
+  # Value must be in bytes
+  def instance_configuration_human_size_cell(value)
+    instance_configuration_cell_html(value) do |v|
+      number_to_human_size(v, strip_insignificant_zeros: true, significant: false)
+    end
+  end
+end

app/models/ci/pipeline.rb

@@ -262,9 +262,7 @@ module Ci
     end
 
     def commit
-      @commit ||= project.commit(sha)
-    rescue
-      nil
+      @commit ||= project.commit_by(oid: sha)
     end
 
     def branch?

app/models/environment.rb

@@ -110,7 +110,7 @@ class Environment < ActiveRecord::Base
   end
 
   def ref_path
-    "refs/#{Repository::REF_ENVIRONMENTS}/#{Shellwords.shellescape(name)}"
+    "refs/#{Repository::REF_ENVIRONMENTS}/#{generate_slug}"
   end
 
   def formatted_external_url

app/models/instance_configuration.rb

+require 'resolv'
+
+class InstanceConfiguration
+  SSH_ALGORITHMS = %w(DSA ECDSA ED25519 RSA).freeze
+  SSH_ALGORITHMS_PATH = '/etc/ssh/'.freeze
+  CACHE_KEY = 'instance_configuration'.freeze
+  EXPIRATION_TIME = 24.hours
+
+  def settings
+    @configuration ||= Rails.cache.fetch(CACHE_KEY, expires_in: EXPIRATION_TIME) do
+      { ssh_algorithms_hashes: ssh_algorithms_hashes,
+        host: host,
+        gitlab_pages: gitlab_pages,
+        gitlab_ci: gitlab_ci }.deep_symbolize_keys
+    end
+  end
+
+  private
+
+  def ssh_algorithms_hashes
+    SSH_ALGORITHMS.map { |algo| ssh_algorithm_hashes(algo) }.compact
+  end
+
+  def host
+    Settings.gitlab.host
+  end
+
+  def gitlab_pages
+    Settings.pages.to_h.merge(ip_address: resolv_dns(Settings.pages.host))
+  end
+
+  def resolv_dns(dns)
+    Resolv.getaddress(dns)
+  rescue Resolv::ResolvError
+  end
+
+  def gitlab_ci
+    Settings.gitlab_ci
+            .to_h
+            .merge(artifacts_max_size: { value: Settings.artifacts.max_size&.megabytes,
+                                         default: 100.megabytes })
+  end
+
+  def ssh_algorithm_file(algorithm)
+    File.join(SSH_ALGORITHMS_PATH, "ssh_host_#{algorithm.downcase}_key.pub")
+  end
+
+  def ssh_algorithm_hashes(algorithm)
+    content = ssh_algorithm_file_content(algorithm)
+    return unless content.present?
+
+    { name: algorithm,
+      md5: ssh_algorithm_md5(content),
+      sha256: ssh_algorithm_sha256(content) }
+  end
+
+  def ssh_algorithm_file_content(algorithm)
+    file = ssh_algorithm_file(algorithm)
+    return unless File.exist?(file)
+
+    File.read(file)
+  end
+
+  def ssh_algorithm_md5(ssh_file_content)
+    OpenSSL::Digest::MD5.hexdigest(ssh_file_content).scan(/../).join(':')
+  end
+
+  def ssh_algorithm_sha256(ssh_file_content)
+    OpenSSL::Digest::SHA256.hexdigest(ssh_file_content)
+  end
+end

app/models/pages_domain.rb

@@ -16,9 +16,9 @@ class PagesDomain < ActiveRecord::Base
     key: Gitlab::Application.secrets.db_key_base,
     algorithm: 'aes-256-cbc'
 
-  after_create :update
-  after_save :update
-  after_destroy :update
+  after_create :update_daemon
+  after_save :update_daemon
+  after_destroy :update_daemon
 
   def to_param
     domain
@@ -80,7 +80,7 @@ class PagesDomain < ActiveRecord::Base
 
   private
 
-  def update
+  def update_daemon
     ::Projects::UpdatePagesConfigurationService.new(project).execute
   end
 

app/models/project.rb

@@ -539,6 +539,10 @@ class Project < ActiveRecord::Base
     repository.commit(ref)
   end
 
+  def commit_by(oid:)
+    repository.commit_by(oid: oid)
+  end
+
   # ref can't be HEAD, can only be branch/tag name or SHA
   def latest_successful_builds_for(ref = default_branch)
     latest_pipeline = pipelines.latest_successful_for(ref)
@@ -552,7 +556,7 @@ class Project < ActiveRecord::Base
 
   def merge_base_commit(first_commit_id, second_commit_id)
     sha = repository.merge_base(first_commit_id, second_commit_id)
-    repository.commit(sha) if sha
+    commit_by(oid: sha) if sha
   end
 
   def saved?

app/models/project_services/jira_service.rb

@@ -3,6 +3,8 @@ class JiraService < IssueTrackerService
 
   validates :url, url: true, presence: true, if: :activated?
   validates :api_url, url: true, allow_blank: true
+  validates :username, presence: true, if: :activated?
+  validates :password, presence: true, if: :activated?
 
   prop_accessor :username, :password, :url, :api_url, :jira_issue_transition_id, :title, :description
 

app/models/project_services/kubernetes_service.rb

@@ -155,7 +155,10 @@ class KubernetesService < DeploymentService
   end
 
   def default_namespace
-    "#{project.path}-#{project.id}" if project.present?
+    return unless project
+
+    slug = "#{project.path}-#{project.id}".downcase
+    slug.gsub(/[^-a-z0-9]/, '-').gsub(/^-+/, '')
   end
 
   def build_kubeclient!(api_path: 'api', api_version: 'v1')

app/models/repository.rb

@@ -83,6 +83,7 @@ class Repository
     @full_path = full_path
     @disk_path = disk_path || full_path
     @project = project
+    @commit_cache = {}
   end
 
   def ==(other)
@@ -110,18 +111,17 @@ class Repository
 
   def commit(ref = 'HEAD')
     return nil unless exists?
+    return ref if ref.is_a?(::Commit)
 
-    commit =
-      if ref.is_a?(Gitlab::Git::Commit)
-        ref
-      else
-        Gitlab::Git::Commit.find(raw_repository, ref)
-      end
+    find_commit(ref)
+  end
 
-    commit = ::Commit.new(commit, @project) if commit
-    commit
-  rescue Rugged::OdbError, Rugged::TreeError
-    nil
+  # Finding a commit by the passed SHA
+  # Also takes care of caching, based on the SHA
+  def commit_by(oid:)
+    return @commit_cache[oid] if @commit_cache.key?(oid)
+
+    @commit_cache[oid] = find_commit(oid)
   end
 
   def commits(ref, path: nil, limit: nil, offset: nil, skip_merges: false, after: nil, before: nil)
@@ -238,7 +238,7 @@ class Repository
   # branches or tags, but we want to keep some of these commits around, for
   # example if they have comments or CI builds.
   def keep_around(sha)
-    return unless sha && commit(sha)
+    return unless sha && commit_by(oid: sha)
 
     return if kept_around?(sha)
 
@@ -869,22 +869,12 @@ class Repository
   end
 
   def ff_merge(user, source, target_branch, merge_request: nil)
-    our_commit = rugged.branches[target_branch].target
-    their_commit =
-      if source.is_a?(Gitlab::Git::Commit)
-        source.raw_commit
-      else
-        rugged.lookup(source)
-      end
-
-    raise 'Invalid merge target' if our_commit.nil?
-    raise 'Invalid merge source' if their_commit.nil?
+    their_commit_id = commit(source)&.id
+    raise 'Invalid merge source' if their_commit_id.nil?
 
-    with_branch(user, target_branch) do |start_commit|
-      merge_request&.update(in_progress_merge_commit_sha: their_commit.oid)
+    merge_request&.update(in_progress_merge_commit_sha: their_commit_id)
 
-      their_commit.oid
-    end
+    with_cache_hooks { raw.ff_merge(user, their_commit_id, target_branch) }
   end
 
   def revert(
@@ -1092,6 +1082,10 @@ class Repository
     if instance_variable_defined?(ivar)
       instance_variable_get(ivar)
     else
+      # If the repository doesn't exist and a fallback was specified we return
+      # that value inmediately. This saves us Rugged/gRPC invocations.
+      return fallback unless fallback.nil? || exists?
+
       begin
         value =
           if memoize_only
@@ -1101,8 +1095,9 @@ class Repository
           end
         instance_variable_set(ivar, value)
       rescue Rugged::ReferenceError, Gitlab::Git::Repository::NoRepository
-        # if e.g. HEAD or the entire repository doesn't exist we want to
-        # gracefully handle this and not cache anything.
+        # Even if the above `#exists?` check passes these errors might still
+        # occur (for example because of a non-existing HEAD). We want to
+        # gracefully handle this and not cache anything
         fallback
       end
     end
@@ -1130,6 +1125,18 @@ class Repository
 
   private
 
+  # TODO Generice finder, later split this on finders by Ref or Oid
+  # gitlab-org/gitlab-ce#39239
+  def find_commit(oid_or_ref)
+    commit = if oid_or_ref.is_a?(Gitlab::Git::Commit)
+               oid_or_ref
+             else
+               Gitlab::Git::Commit.find(raw_repository, oid_or_ref)
+             end
+
+    ::Commit.new(commit, @project) if commit
+  end
+
   def blob_data_at(sha, path)
     blob = blob_at(sha, path)
     return unless blob
@@ -1168,12 +1175,12 @@ class Repository
 
   def last_commit_for_path_by_gitaly(sha, path)
     c = raw_repository.gitaly_commit_client.last_commit_for_path(sha, path)
-    commit(c)
+    commit_by(oid: c)
   end
 
   def last_commit_for_path_by_rugged(sha, path)
     sha = last_commit_id_for_path_by_shelling_out(sha, path)
-    commit(sha)
+    commit_by(oid: sha)
   end
 
   def last_commit_id_for_path_by_shelling_out(sha, path)

app/views/dashboard/_projects_head.html.haml

@@ -6,13 +6,13 @@
   .fade-right= icon('angle-right')
   %ul.nav-links.scrolling-tabs
     = nav_link(page: [dashboard_projects_path, root_path]) do
-      = link_to dashboard_projects_path, title: 'Home', class: 'shortcuts-activity', data: {placement: 'right'} do
+      = link_to dashboard_projects_path, class: 'shortcuts-activity', data: {placement: 'right'} do
         Your projects
     = nav_link(page: starred_dashboard_projects_path) do
-      = link_to starred_dashboard_projects_path, title: 'Starred Projects', data: {placement: 'right'} do
+      = link_to starred_dashboard_projects_path, data: {placement: 'right'} do
         Starred projects
     = nav_link(page: [explore_root_path, trending_explore_projects_path, starred_explore_projects_path, explore_projects_path]) do
-      = link_to explore_root_path, title: 'Explore', data: {placement: 'right'} do
+      = link_to explore_root_path, data: {placement: 'right'} do
         Explore projects
 
   .nav-controls

app/views/help/index.html.haml

@@ -9,9 +9,15 @@
     Enterprise Edition
     - if user_signed_in?
       %span= Gitlab::VERSION
+<<<<<<< HEAD
       %small= link_to Gitlab::REVISION, Gitlab::COM_URL + namespace_project_commits_path('gitlab-org', 'gitlab-ee', Gitlab::REVISION)
       - if current_application_settings.version_check_enabled
         = version_status_badge
+=======
+      %small= link_to Gitlab::REVISION, Gitlab::COM_URL + namespace_project_commits_path('gitlab-org', 'gitlab-ce', Gitlab::REVISION)
+      = version_status_badge
+
+>>>>>>> upstream/master
   %p.slead
     GitLab is open source software to collaborate on code.
     %br
@@ -24,6 +30,7 @@
     Used by more than 100,000 organizations, GitLab is the most popular solution to manage git repositories on-premises.
     %br
     Read more about GitLab at #{link_to promo_host, promo_url, target: '_blank', rel: 'noopener noreferrer'}.
+    %p= link_to 'Check the current instance configuration ', help_instance_configuration_url
   %hr
 
 .row.prepend-top-default

app/views/help/instance_configuration.html.haml

+- page_title 'Instance Configuration'
+.wiki.documentation
+  %h1 Instance Configuration
+
+  %p
+    In this page you will find information about the settings that are used in your current instance.
+
+  = render 'help/instance_configuration/ssh_info'
+  = render 'help/instance_configuration/gitlab_pages'
+  = render 'help/instance_configuration/gitlab_ci'
+  %p
+    %strong Table of contents
+
+    %ul
+      = content_for :table_content
+
+  = content_for :settings_content

app/views/help/instance_configuration/_gitlab_ci.html.haml

+- content_for :table_content do
+  %li= link_to 'GitLab CI', '#gitlab-ci'
+
+- content_for :settings_content do
+  %h2#gitlab-ci
+    GitLab CI
+
+  %p
+    Below are the current settings regarding
+    = succeed('.') { link_to('GitLab CI', 'https://about.gitlab.com/gitlab-ci', target: '_blank') }
+
+  .table-responsive
+    %table
+      %thead
+        %tr
+          %th Setting
+          %th= instance_configuration_host(@instance_configuration.settings[:host])
+          %th Default
+      %tbody
+        %tr
+          - artifacts_size = @instance_configuration.settings[:gitlab_ci][:artifacts_max_size]
+          %td Artifacts maximum size
+          %td= instance_configuration_human_size_cell(artifacts_size[:value])
+          %td= instance_configuration_human_size_cell(artifacts_size[:default])

app/views/help/instance_configuration/_gitlab_pages.html.haml

+- gitlab_pages = @instance_configuration.settings[:gitlab_pages]
+- content_for :table_content do
+  %li= link_to 'GitLab Pages', '#gitlab-pages'
+
+- content_for :settings_content do
+  %h2#gitlab-pages
+    GitLab Pages
+
+  %p
+    Below are the settings for
+    = succeed('.') { link_to('Gitlab Pages', gitlab_pages[:url], target: '_blank') }
+  .table-responsive
+    %table
+      %thead
+        %tr
+          %th Setting
+          %th= instance_configuration_host(@instance_configuration.settings[:host])
+      %tbody
+        %tr
+          %td Domain Name
+          %td
+            %code= instance_configuration_cell_html(gitlab_pages[:host])
+        %tr
+          %td IP Address
+          %td
+            %code= instance_configuration_cell_html(gitlab_pages[:ip_address])
+        %tr
+          %td Port
+          %td
+            %code= instance_configuration_cell_html(gitlab_pages[:port])
+  %br
+
+  %p
+    The maximum size of your Pages site is regulated by the artifacts maximum
+    size which is part of #{succeed('.') { link_to('GitLab CI', '#gitlab-ci') }}

app/views/help/instance_configuration/_ssh_info.html.haml

+- ssh_info = @instance_configuration.settings[:ssh_algorithms_hashes]
+- if ssh_info.any?
+  - content_for :table_content do
+    %li= link_to 'SSH host keys fingerprints', '#ssh-host-keys-fingerprints'
+
+  - content_for :settings_content do
+    %h2#ssh-host-keys-fingerprints
+      SSH host keys fingerprints
+
+    %p
+      Below are the fingerprints for the current instance SSH host keys.
+
+    .table-responsive
+      %table
+        %thead
+          %tr
+            %th Algorithm
+            %th MD5
+            %th SHA256
+        %tbody
+          - ssh_info.each do |algorithm|
+            %tr
+              %td= algorithm[:name]
+              %td
+                %code= instance_configuration_cell_html(algorithm[:md5])
+              %td
+                %code= instance_configuration_cell_html(algorithm[:sha256])

app/views/projects/clusters/show.html.haml

@@ -47,7 +47,7 @@
 
         - if can?(current_user, :update_cluster, @cluster)
           .form-group
-            = field.submit s_('ClusterIntegration|Save'), class: 'btn btn-success'
+            = field.submit _('Save'), class: 'btn btn-success'
 
   %section.settings#js-cluster-details
     .settings-header
@@ -68,7 +68,7 @@
 
   %section.settings#js-cluster-advanced-settings
     .settings-header
-      %h4= s_('ClusterIntegration|Advanced settings')
+      %h4= _('Advanced settings')
       %button.btn.js-settings-toggle
         = expanded ? 'Collapse' : 'Expand'
       %p= s_('ClusterIntegration|Manage Cluster integration on your GitLab project')

app/views/projects/commit/_commit_box.html.haml

@@ -77,5 +77,6 @@
         #{ n_(s_('Pipeline|with stage'), s_('Pipeline|with stages'), last_pipeline.stages_count) }
         .mr-widget-pipeline-graph
           = render 'shared/mini_pipeline_graph', pipeline: last_pipeline, klass: 'js-commit-pipeline-graph'
-      in
-      = time_interval_in_words last_pipeline.duration
+      - if last_pipeline.duration
+        in
+        = time_interval_in_words last_pipeline.duration

app/views/projects/empty.html.haml

@@ -72,6 +72,7 @@
           %pre.light-well
             :preserve
               cd existing_repo
+              git remote rename origin old-origin
               git remote add origin #{ content_tag(:span, default_url_to_repo, class: 'clone')}
               git push -u origin --all
               git push -u origin --tags

app/views/projects/tree/_tree_header.html.haml

@@ -2,7 +2,9 @@
   .tree-ref-holder
     = render 'shared/ref_switcher', destination: 'tree', path: @path, show_create: true
 
-  - unless show_new_repo?
+  - if show_new_repo?
+    .js-new-dropdown
+  - else
     = render 'projects/tree/old_tree_header'
 
 .tree-controls

app/views/shared/issuable/_search_bar.html.haml

@@ -29,7 +29,6 @@
               %ul.tokens-container.list-unstyled
                 %li.input-token
                   %input.form-control.filtered-search{ search_filter_input_options(type) }
-              = icon('filter')
             #js-dropdown-hint.filtered-search-input-dropdown-menu.dropdown-menu.hint-dropdown
               %ul{ data: { dropdown: true } }
                 %li.filter-dropdown-item{ data: { action: 'submit' } }

app/views/shared/repo/_repo.html.haml

@@ -7,4 +7,5 @@
                blob_url: namespace_project_blob_path(project.namespace, project, '{{branch}}'),
                new_mr_template_url: namespace_project_new_merge_request_path(project.namespace, project, merge_request: { source_branch: '{{source_branch}}' }),
                can_commit: (!!can_push_branch?(project, @ref)).to_s,
-               on_top_of_branch: (!!on_top_of_branch?(project, @ref)).to_s } }
+               on_top_of_branch: (!!on_top_of_branch?(project, @ref)).to_s,
+               current_path: @path } }

changelogs/unreleased/14970-suggest-rename-remote.yml

+---
+title: Suggest to rename the remote for existing repository instructions
+merge_request: 14970
+author: helmo42
+type: added

changelogs/unreleased/23000-pages-api.yml

+---
+title: Add API endpoints for Pages Domains
+merge_request: 13917
+author: Travis Miller
+type: added

changelogs/unreleased/32318-filter-icon.yml

+---
+title: Remove filter icon from search bar
+merge_request:
+author:
+type: other

changelogs/unreleased/35199-case-insensitive-branches-search.yml

+---
+title: Case insensitive search for branches
+merge_request: 14995
+author: George Andrinopoulos
+type: fixed

changelogs/unreleased/38178-fl-mr-notes-components.yml

+---
+title: Moves placeholders components into shared folder with documentation. Makes
+  them easier to reuse in MR and Snippets comments
+merge_request:
+author:
+type: other

changelogs/unreleased/39419-remove-overzealous-tooltips.yml

+---
+title: Remove overzealous tooltips in projects page tabs
+merge_request: 15017
+author:
+type: removed

changelogs/unreleased/39495-fix-bitbucket-login.yml

+---
+title: Fix bitbucket login
+merge_request: 15051
+author:
+type: fixed

changelogs/unreleased/api-configure-jira.yml

+---
+title: Validate username/pw for Jiraservice, require them in the API
+merge_request: 15025
+author: Robert Schilling
+type: fixed

changelogs/unreleased/api-doc-group-statistics.yml

+---
+title: Update the groups API documentation
+merge_request: 15024
+author: Robert Schilling
+type: fixed

changelogs/unreleased/bvl-dont-rename-free-names.yml

+---
+title: Don't rename paths that were freed up when upgrading
+merge_request: 15029
+author:
+type: fixed

changelogs/unreleased/feature-ssh_host_fingerprint.yml

+---
+title: Automatic configuration settings page
+merge_request: 13850
+author: Francisco Lopez
+type: added

changelogs/unreleased/fix-add-path-attr-to-wiki-file.yml

+---
+title: Fix broken wiki pages that link to a wiki file
+merge_request: 15019
+author:
+type: fixed

changelogs/unreleased/hide-pipeline-zero-duration.yml

+---
+title: Hides pipeline duration in commit box when it is zero (nil)
+merge_request: 14979
+author: gvieira37
+type: fixed

changelogs/unreleased/mr-14642.yml

+---
+title: Auto Devops kubernetes default namespace is now correctly built out of gitlab
+  project group-name
+merge_request: 14642
+author: Mircea Danila Dumitrescu
+type: fixed

changelogs/unreleased/sh-fix-environment-write-ref.yml

+---
+title: Fix the writing of invalid environment refs
+merge_request:
+author:
+type: fixed

changelogs/unreleased/sh-memoize-logger.yml

+---
+title: Memoize GitLab logger to reduce open file descriptors
+merge_request:
+author:
+type: fixed

changelogs/unreleased/zj-commit-cache.yml

+---
+title: Cache commits fetched from the repository
+merge_request:
+author:
+type: performance

config/routes/help.rb

-get 'help'           => 'help#index'
-get 'help/shortcuts' => 'help#shortcuts'
-get 'help/ui'        => 'help#ui'
-get 'help/*path'     => 'help#show', as: :help_page
+get 'help'                        => 'help#index'
+get 'help/shortcuts'              => 'help#shortcuts'
+get 'help/ui'                     => 'help#ui'
+get 'help/instance_configuration' => 'help#instance_configuration'
+get 'help/*path'                  => 'help#show', as: :help_page

db/post_migrate/20170525140254_rename_all_reserved_paths_again.rb

@@ -13,7 +13,6 @@ class RenameAllReservedPathsAgain < ActiveRecord::Migration
       .well-known
       abuse_reports
       admin
-      all
       api
       assets
       autocomplete
@@ -24,29 +23,20 @@ class RenameAllReservedPathsAgain < ActiveRecord::Migration
       groups
       health_check
       help
-      hooks
       import
       invites
-      issues
       jwt
       koding
-      member
-      merge_requests
-      new
-      notes
       notification_settings
       oauth
       profile
       projects
       public
-      repository
       robots.txt
       s
       search
       sent_notifications
-      services
       snippets
-      teams
       u
       unicorn_test
       unsubscribes
@@ -94,7 +84,6 @@ class RenameAllReservedPathsAgain < ActiveRecord::Migration
       notification_setting
       pipeline_quota
       projects
-      subgroups
   ].freeze
 
   def up

db/schema.rb

@@ -161,6 +161,7 @@ ActiveRecord::Schema.define(version: 20171017145932) do
     t.integer "circuitbreaker_failure_wait_time", default: 30
     t.integer "circuitbreaker_failure_reset_time", default: 1800
     t.integer "circuitbreaker_storage_timeout", default: 30
+<<<<<<< HEAD
     t.boolean "remote_mirror_available", default: true, null: false
     t.integer "circuitbreaker_access_retries", default: 3
     t.integer "circuitbreaker_backoff_threshold", default: 80
@@ -181,6 +182,10 @@ ActiveRecord::Schema.define(version: 20171017145932) do
     t.integer "group_id", null: false
     t.datetime "created_at"
     t.datetime "updated_at"
+=======
+    t.integer "circuitbreaker_access_retries", default: 3
+    t.integer "circuitbreaker_backoff_threshold", default: 80
+>>>>>>> upstream/master
   end
 
   add_index "approver_groups", ["group_id"], name: "index_approver_groups_on_group_id", using: :btree

doc/api/README.md

@@ -38,6 +38,7 @@ following locations:
 - [Notes](notes.md) (comments)
 - [Notification settings](notification_settings.md)
 - [Open source license templates](templates/licenses.md)
+- [Pages Domains](pages_domains.md)
 - [Pipelines](pipelines.md)
 - [Pipeline Triggers](pipeline_triggers.md)
 - [Pipeline Schedules](pipeline_schedules.md)

doc/api/groups.md

@@ -40,6 +40,38 @@ GET /groups
 ]
 ```
 
+When adding the parameter `statistics=true` and the authenticated user is an admin, additional group statistics are returned.
+
+```
+GET /groups?statistics=true
+```
+
+```json
+[
+  {
+    "id": 1,
+    "name": "Foobar Group",
+    "path": "foo-bar",
+    "description": "An interesting group",
+    "visibility": "public",
+    "lfs_enabled": true,
+    "avatar_url": "http://localhost:3000/uploads/group/avatar/1/foo.jpg",
+    "web_url": "http://localhost:3000/groups/foo-bar",
+    "request_access_enabled": false,
+    "full_name": "Foobar Group",
+    "full_path": "foo-bar",
+    "parent_id": null,
+    "statistics": {
+      "storage_size" : 212,
+      "repository_size" : 33,
+      "lfs_objects_size" : 123,
+      "job_artifacts_size" : 57
+
+    }
+  }
+]
+```
+
 You can search for groups by name or path, see below.
 
 ## List a group's projects

doc/api/pages_domains.md

+# Pages domains API
+
+Endpoints for connecting custom domain(s) and TLS certificates in [GitLab Pages](https://about.gitlab.com/features/pages/).
+
+The GitLab Pages feature must be enabled to use these endpoints. Find out more about [administering](../administration/pages/index.md) and [using](../user/project/pages/index.md) the feature.
+
+## List pages domains
+
+Get a list of project pages domains. The user must have permissions to view pages domains.
+
+```http
+GET /projects/:id/pages/domains
+```
+
+| Attribute | Type           | Required | Description                              |
+| --------- | -------------- | -------- | ---------------------------------------- |
+| `id`      | integer/string | yes      | The ID or [URL-encoded path of the project](README.md#namespaced-path-encoding) owned by the authenticated user |
+
+```bash
+curl --header "PRIVATE-TOKEN: 9koXpg98eAheJpvBs5tK" https://gitlab.example.com/api/v4/projects/5/pages/domains
+```
+
+```json
+[
+  {
+    "domain": "www.domain.example",
+    "url": "http://www.domain.example"
+  },
+  {
+    "domain": "ssl.domain.example",
+    "url": "https://ssl.domain.example",
+    "certificate": {
+      "subject": "/O=Example, Inc./OU=Example Origin CA/CN=Example Origin Certificate",
+      "expired": false,
+      "certificate": "-----BEGIN CERTIFICATE-----\n … \n-----END CERTIFICATE-----",
+      "certificate_text": "Certificate:\n … \n"
+    }
+  }
+]
+```
+
+## Single pages domain
+
+Get a single project pages domain. The user must have permissions to view pages domains.
+
+```http
+GET /projects/:id/pages/domains/:domain
+```
+
+| Attribute | Type           | Required | Description                              |
+| --------- | -------------- | -------- | ---------------------------------------- |
+| `id`      | integer/string | yes      | The ID or [URL-encoded path of the project](README.md#namespaced-path-encoding) owned by the authenticated user |
+| `domain`  | string         | yes      | The domain                               |
+
+```bash
+curl --header "PRIVATE-TOKEN: 9koXpg98eAheJpvBs5tK" https://gitlab.example.com/api/v4/projects/5/pages/domains/www.domain.example
+```
+
+```json
+{
+  "domain": "www.domain.example",
+  "url": "http://www.domain.example"
+}
+```
+
+```bash
+curl --header "PRIVATE-TOKEN: 9koXpg98eAheJpvBs5tK" https://gitlab.example.com/api/v4/projects/5/pages/domains/ssl.domain.example
+```
+
+```json
+{
+  "domain": "ssl.domain.example",
+  "url": "https://ssl.domain.example",
+  "certificate": {
+    "subject": "/O=Example, Inc./OU=Example Origin CA/CN=Example Origin Certificate",
+    "expired": false,
+    "certificate": "-----BEGIN CERTIFICATE-----\n … \n-----END CERTIFICATE-----",
+    "certificate_text": "Certificate:\n … \n"
+  }
+}
+```
+
+## Create new pages domain
+
+Creates a new pages domain. The user must have permissions to create new pages domains.
+
+```http
+POST /projects/:id/pages/domains
+```
+
+| Attribute     | Type           | Required | Description                              |
+| ------------- | -------------- | -------- | ---------------------------------------- |
+| `id`          | integer/string | yes      | The ID or [URL-encoded path of the project](README.md#namespaced-path-encoding) owned by the authenticated user |
+| `domain`      | string         | yes      | The domain                               |
+| `certificate` | file/string    | no       | The certificate in PEM format with intermediates following in most specific to least specific order.|
+| `key`         | file/string    | no       | The certificate key in PEM format.       |
+
+```bash
+curl --request POST --header "PRIVATE-TOKEN: 9koXpg98eAheJpvBs5tK" --form="domain=ssl.domain.example" --form="certificate=@/path/to/cert.pem" --form="key=@/path/to/key.pem" https://gitlab.example.com/api/v4/projects/5/pages/domains
+```
+
+```bash
+curl --request POST --header "PRIVATE-TOKEN: 9koXpg98eAheJpvBs5tK" --form="domain=ssl.domain.example" --form="certificate=$CERT_PEM" --form="key=$KEY_PEM" https://gitlab.example.com/api/v4/projects/5/pages/domains
+```
+
+```json
+{
+  "domain": "ssl.domain.example",
+  "url": "https://ssl.domain.example",
+  "certificate": {
+    "subject": "/O=Example, Inc./OU=Example Origin CA/CN=Example Origin Certificate",
+    "expired": false,
+    "certificate": "-----BEGIN CERTIFICATE-----\n … \n-----END CERTIFICATE-----",
+    "certificate_text": "Certificate:\n … \n"
+  }
+}
+```
+
+## Update pages domain
+
+Updates an existing project pages domain. The user must have permissions to change an existing pages domains.
+
+```http
+PUT /projects/:id/pages/domains/:domain
+```
+
+| Attribute     | Type           | Required | Description                              |
+| ------------- | -------------- | -------- | ---------------------------------------- |
+| `id`          | integer/string | yes      | The ID or [URL-encoded path of the project](README.md#namespaced-path-encoding) owned by the authenticated user |
+| `domain`      | string         | yes      | The domain                               |
+| `certificate` | file/string    | no       | The certificate in PEM format with intermediates following in most specific to least specific order.|
+| `key`         | file/string    | no       | The certificate key in PEM format.       |
+
+```bash
+curl --request PUT --header "PRIVATE-TOKEN: 9koXpg98eAheJpvBs5tK" --form="certificate=@/path/to/cert.pem" --form="key=@/path/to/key.pem" https://gitlab.example.com/api/v4/projects/5/pages/domains/ssl.domain.example
+```
+
+```bash
+curl --request PUT --header "PRIVATE-TOKEN: 9koXpg98eAheJpvBs5tK" --form="certificate=$CERT_PEM" --form="key=$KEY_PEM" https://gitlab.example.com/api/v4/projects/5/pages/domains/ssl.domain.example
+```
+
+```json
+{
+  "domain": "ssl.domain.example",
+  "url": "https://ssl.domain.example",
+  "certificate": {
+    "subject": "/O=Example, Inc./OU=Example Origin CA/CN=Example Origin Certificate",
+    "expired": false,
+    "certificate": "-----BEGIN CERTIFICATE-----\n … \n-----END CERTIFICATE-----",
+    "certificate_text": "Certificate:\n … \n"
+  }
+}
+```
+
+## Delete pages domain
+
+Deletes an existing project pages domain.
+
+```http
+DELETE /projects/:id/pages/domains/:domain
+```
+
+| Attribute | Type           | Required | Description                              |
+| --------- | -------------- | -------- | ---------------------------------------- |
+| `id`      | integer/string | yes      | The ID or [URL-encoded path of the project](README.md#namespaced-path-encoding) owned by the authenticated user |
+| `domain`  | string         | yes      | The domain                               |
+
+```bash
+curl --request DELETE --header "PRIVATE-TOKEN: 9koXpg98eAheJpvBs5tK" https://gitlab.example.com/api/v4/projects/5/pages/domains/ssl.domain.example
+```

doc/api/services.md

@@ -478,8 +478,8 @@ PUT /projects/:id/services/jira
 | --------- | ---- | -------- | ----------- |
 | `url`           | string | yes | The URL to the JIRA project which is being linked to this GitLab project, e.g., `https://jira.example.com`. |
 | `project_key`   | string | yes | The short identifier for your JIRA project, all uppercase, e.g., `PROJ`. |
-| `username`      | string | no  | The username of the user created to be used with GitLab/JIRA. |
-| `password`      | string | no  | The password of the user created to be used with GitLab/JIRA. |
+| `username`      | string | yes  | The username of the user created to be used with GitLab/JIRA. |
+| `password`      | string | yes  | The password of the user created to be used with GitLab/JIRA. |
 | `jira_issue_transition_id` | integer | no | The ID of a transition that moves issues to a closed state. You can find this number under the JIRA workflow administration (**Administration > Issues > Workflows**) by selecting **View** under **Operations** of the desired workflow of your project. The ID of each state can be found inside the parenthesis of each transition name under the **Transitions (id)** column ([see screenshot][trans]). By default, this ID is set to `2`. |
 
 ### Delete JIRA service

doc/api/settings.md

@@ -70,8 +70,11 @@ PUT /application/settings
 | `after_sign_up_text`                     | string           | no                                            | Text shown to the user after signing up                                                                                                                                                                                                                                                                                                                                                                                                                   |
 | `akismet_api_key`                        | string           | no                                            | API key for akismet spam protection                                                                                                                                                                                                                                                                                                                                                                                                                       |
 | `akismet_enabled`                        | boolean          | no                                            | Enable or disable akismet spam protection                                                                                                                                                                                                                                                                                                                                                                                                                 |
+<<<<<<< HEAD
 | `allow_group_owners_to_manage_ldap`      | boolean          | no                                            | Set to `true` to allow group owners to manage LDAP                                                                                                                                                                                                                                                                                                                                                                                                        |
 | `authorized_keys_enabled`                | boolean          | no                                            | By default, we write to the "authorized_keys" file to support Git over SSH without additional configuration. GitLab can be optimized to authenticate SSH keys via the database file. Only disable this if you have configured your OpenSSH server to use the AuthorizedKeysCommand.                                                                                                                                                                       |
+=======
+>>>>>>> upstream/master
 | `circuitbreaker_access_retries           | integer          | no                                            | The number of attempts GitLab will make to access a storage.                                                                                                                                                                                                                                                                                                                                                                                              |
 | `circuitbreaker_backoff_threshold        | integer          | no                                            | The number of failures after which GitLab will start temporarily disabling access to a storage shard on a host.                                                                                                                                                                                                                                                                                                                                                                                                                                                        |
 | `circuitbreaker_failure_count_threshold` | integer          | no                                            | The number of failures of after which GitLab will completely prevent access to the storage.                                                                                                                                                                                                                                                                                                                                                               |

doc/integration/saml.md

@@ -132,14 +132,17 @@ On the sign in page there should now be a SAML button below the regular sign in
 Click the icon to begin the authentication process. If everything goes well the user
 will be returned to GitLab and will be signed in.
 
-## External Groups
+## Marking Users as External based on SAML Groups
 
 >**Note:**
 This setting is only available on GitLab 8.7 and above.
 
-SAML login includes support for external groups. You can define in the SAML
-settings which groups, to which your users belong in your IdP, you wish to be
-marked as [external](../user/permissions.md).
+SAML login includes support for automatically identifying whether a user should
+be considered an [external](../user/permissions.md) user based on the user's group
+membership in the SAML identity provider. This feature **does not** allow you to
+automatically add users to GitLab [Groups](../user/group/index.md), it simply 
+allows you to mark users as External if they are members of certain groups in the 
+Identity Provider.
 
 ### Requirements
 

doc/user/project/import/index.md

@@ -4,7 +4,7 @@
 1. [From ClearCase](clearcase.md)
 1. [From CVS](cvs.md)
 1. [From FogBugz](fogbugz.md)
-1. [From GitHub.com of GitHub Enterprise](github.md)
+1. [From GitHub.com or GitHub Enterprise](github.md)
 1. [From GitLab.com](gitlab_com.md)
 1. [From Gitea](gitea.md)
 1. [From Perforce](perforce.md)

doc/user/project/merge_requests/index.md

@@ -30,10 +30,17 @@ With GitLab merge requests, you can:
 
 With **[GitLab Enterprise Edition][ee]**, you can also:
 
+<<<<<<< HEAD
 - View the deployment process across projects with [Multi-Project Pipeline Graphs](../../../ci/multi_project_pipeline_graphs.md) (available only in GitLab Enterprise Edition Premium)
 - Request [approvals](#merge-request-approvals) from your managers (available in GitLab Enterprise Edition Starter)
 - [Squash and merge](#squash-and-merge) for a cleaner commit history (available in GitLab Enterprise Edition Starter)
 - Analyze the impact of your changes with [Code Quality reports](#code-quality-reports) (available in GitLab Enterprise Edition Starter)
+=======
+- View the deployment process across projects with [Multi-Project Pipeline Graphs](https://docs.gitlab.com/ee/ci/multi_project_pipeline_graphs.html#multi-project-pipeline-graphs) (available only in GitLab Enterprise Edition Premium)
+- Request [approvals](https://docs.gitlab.com/ee/user/project/merge_requests/merge_request_approvals.html) from your managers (available in GitLab Enterprise Edition Starter)
+- [Squash and merge](https://docs.gitlab.com/ee/user/project/merge_requests/squash_and_merge.html) for a cleaner commit history (available in GitLab Enterprise Edition Starter)
+- Analise the impact of your changes with [Code Quality reports](https://docs.gitlab.com/ee/user/project/merge_requests/code_quality_diff.html) (available in GitLab Enterprise Edition Starter)
+>>>>>>> upstream/master
 
 ## Use cases
 

lib/api/api.rb

@@ -145,6 +145,7 @@ module API
     mount ::API::Namespaces
     mount ::API::Notes
     mount ::API::NotificationSettings
+    mount ::API::PagesDomains
     mount ::API::Pipelines
     mount ::API::PipelineSchedules
     mount ::API::ProjectHooks

lib/api/entities.rb

@@ -1165,5 +1165,22 @@ module API
       expose :key
       expose :value
     end
+
+    class PagesDomainCertificate < Grape::Entity
+      expose :subject
+      expose :expired?, as: :expired
+      expose :certificate
+      expose :certificate_text
+    end
+
+    class PagesDomain < Grape::Entity
+      expose :domain
+      expose :url
+      expose :certificate,
+             if: ->(pages_domain, _) { pages_domain.certificate? },
+             using: PagesDomainCertificate do |pages_domain|
+        pages_domain
+      end
+    end
   end
 end

lib/api/helpers.rb

@@ -204,6 +204,10 @@ module API
       end
     end
 
+    def require_pages_enabled!
+      not_found! unless user_project.pages_available?
+    end
+
     def can?(object, action, subject = :global)
       Ability.allowed?(object, action, subject)
     end

lib/api/pages_domains.rb

+module API
+  class PagesDomains < Grape::API
+    include PaginationParams
+
+    before do
+      authenticate!
+      require_pages_enabled!
+    end
+
+    after_validation do
+      normalize_params_file_to_string
+    end
+
+    helpers do
+      def find_pages_domain!
+        user_project.pages_domains.find_by(domain: params[:domain]) || not_found!('PagesDomain')
+      end
+
+      def pages_domain
+        @pages_domain ||= find_pages_domain!
+      end
+
+      def normalize_params_file_to_string
+        params.each do |k, v|
+          if v.is_a?(Hash) && v.key?(:tempfile)
+            params[k] = v[:tempfile].to_a.join('')
+          end
+        end
+      end
+    end
+
+    params do
+      requires :id, type: String, desc: 'The ID of a project'
+    end
+    resource :projects, requirements: { id: %r{[^/]+} } do
+      desc 'Get all pages domains' do
+        success Entities::PagesDomain
+      end
+      params do
+        use :pagination
+      end
+      get ":id/pages/domains" do
+        authorize! :read_pages, user_project
+
+        present paginate(user_project.pages_domains.order(:domain)), with: Entities::PagesDomain
+      end
+
+      desc 'Get a single pages domain' do
+        success Entities::PagesDomain
+      end
+      params do
+        requires :domain, type: String, desc: 'The domain'
+      end
+      get ":id/pages/domains/:domain", requirements: { domain: %r{[^/]+} } do
+        authorize! :read_pages, user_project
+
+        present pages_domain, with: Entities::PagesDomain
+      end
+
+      desc 'Create a new pages domain' do
+        success Entities::PagesDomain
+      end
+      params do
+        requires :domain, type: String, desc: 'The domain'
+        optional :certificate, allow_blank: false, types: [File, String], desc: 'The certificate'
+        optional :key, allow_blank: false, types: [File, String], desc: 'The key'
+        all_or_none_of :certificate, :key
+      end
+      post ":id/pages/domains" do
+        authorize! :update_pages, user_project
+
+        pages_domain_params = declared(params, include_parent_namespaces: false)
+        pages_domain = user_project.pages_domains.create(pages_domain_params)
+
+        if pages_domain.persisted?
+          present pages_domain, with: Entities::PagesDomain
+        else
+          render_validation_error!(pages_domain)
+        end
+      end
+
+      desc 'Updates a pages domain'
+      params do
+        requires :domain, type: String, desc: 'The domain'
+        optional :certificate, allow_blank: false, types: [File, String], desc: 'The certificate'
+        optional :key, allow_blank: false, types: [File, String], desc: 'The key'
+      end
+      put ":id/pages/domains/:domain", requirements: { domain: %r{[^/]+} } do
+        authorize! :update_pages, user_project
+
+        pages_domain_params = declared(params, include_parent_namespaces: false)
+
+        # Remove empty private key if certificate is not empty.
+        if pages_domain_params[:certificate] && !pages_domain_params[:key]
+          pages_domain_params.delete(:key)
+        end
+
+        if pages_domain.update(pages_domain_params)
+          present pages_domain, with: Entities::PagesDomain
+        else
+          render_validation_error!(pages_domain)
+        end
+      end
+
+      desc 'Delete a pages domain'
+      params do
+        requires :domain, type: String, desc: 'The domain'
+      end
+      delete ":id/pages/domains/:domain", requirements: { domain: %r{[^/]+} } do
+        authorize! :update_pages, user_project
+
+        status 204
+        pages_domain.destroy
+      end
+    end
+  end
+end

lib/api/services.rb

@@ -313,13 +313,13 @@ module API
           desc: 'The base URL to the JIRA instance API. Web URL value will be used if not set. E.g., https://jira-api.example.com'
         },
         {
-          required: false,
+          required: true,
           name: :username,
           type: String,
           desc: 'The username of the user created to be used with GitLab/JIRA'
         },
         {
-          required: false,
+          required: true,
           name: :password,
           type: String,
           desc: 'The password of the user created to be used with GitLab/JIRA'

lib/gitlab/git/commit.rb

@@ -72,7 +72,8 @@ module Gitlab
 
           decorate(repo, commit) if commit
         rescue Rugged::ReferenceError, Rugged::InvalidError, Rugged::ObjectError,
-               Gitlab::Git::CommandError, Gitlab::Git::Repository::NoRepository
+               Gitlab::Git::CommandError, Gitlab::Git::Repository::NoRepository,
+               Rugged::OdbError, Rugged::TreeError
           nil
         end
 

lib/gitlab/git/hooks_service.rb

@@ -8,7 +8,7 @@ module Gitlab
       def execute(pusher, repository, oldrev, newrev, ref)
         @repository  = repository
         @gl_id       = pusher.gl_id
-        @gl_username = pusher.name
+        @gl_username = pusher.username
         @oldrev      = oldrev
         @newrev      = newrev
         @ref         = ref

lib/gitlab/git/repository.rb

@@ -166,7 +166,7 @@ module Gitlab
       end
 
       def local_branches(sort_by: nil)
-        gitaly_migrate(:local_branches) do |is_enabled|
+        gitaly_migrate(:local_branches, status: Gitlab::GitalyClient::MigrationStatus::OPT_OUT) do |is_enabled|
           if is_enabled
             gitaly_ref_client.local_branches(sort_by: sort_by)
           else
@@ -745,6 +745,16 @@ module Gitlab
         nil
       end
 
+      def ff_merge(user, source_sha, target_branch)
+        OperationService.new(user, self).with_branch(target_branch) do |our_commit|
+          raise ArgumentError, 'Invalid merge target' unless our_commit
+
+          source_sha
+        end
+      rescue Rugged::ReferenceError
+        raise ArgumentError, 'Invalid merge source'
+      end
+
       def revert(user:, commit:, branch_name:, message:, start_branch_name:, start_repository:)
         OperationService.new(user, self).with_branch(
           branch_name,

lib/gitlab/git/user.rb

@@ -7,9 +7,8 @@ module Gitlab
         new(gitlab_user.username, gitlab_user.name, gitlab_user.email, Gitlab::GlId.gl_id(gitlab_user))
       end
 
-      # TODO support the username field in Gitaly https://gitlab.com/gitlab-org/gitaly/issues/628
       def self.from_gitaly(gitaly_user)
-        new('', gitaly_user.name, gitaly_user.email, gitaly_user.gl_id)
+        new(gitaly_user.gl_username, gitaly_user.name, gitaly_user.email, gitaly_user.gl_id)
       end
 
       def initialize(username, name, email, gl_id)
@@ -22,6 +21,10 @@ module Gitlab
       def ==(other)
         [username, name, email, gl_id] == [other.username, other.name, other.email, other.gl_id]
       end
+
+      def to_gitaly
+        Gitaly::User.new(gl_username: username, gl_id: gl_id, name: name, email: email)
+      end
     end
   end
 end

lib/gitlab/git/wiki.rb

@@ -8,6 +8,7 @@ module Gitlab
           { name: name, email: email, message: message }
         end
       end
+      PageBlob = Struct.new(:name)
 
       def self.default_ref
         'master'
@@ -80,7 +81,15 @@ module Gitlab
       end
 
       def preview_slug(title, format)
-        gollum_wiki.preview_page(title, '', format).url_path
+        # Adapted from gollum gem (Gollum::Wiki#preview_page) to avoid
+        # using Rugged through a Gollum::Wiki instance
+        page_class = Gollum::Page
+        page = page_class.new(nil)
+        ext = page_class.format_to_ext(format.to_sym)
+        name = page_class.cname(title) + '.' + ext
+        blob = PageBlob.new(name)
+        page.populate(blob)
+        page.url_path
       end
 
       private

lib/gitlab/git/wiki_file.rb

 module Gitlab
   module Git
     class WikiFile
-      attr_reader :mime_type, :raw_data, :name
+      attr_reader :mime_type, :raw_data, :name, :path
 
       # This class is meant to be serializable so that it can be constructed
       # by Gitaly and sent over the network to GitLab.
@@ -13,6 +13,7 @@ module Gitlab
         @mime_type = gollum_file.mime_type
         @raw_data = gollum_file.raw_data
         @name = gollum_file.name
+        @path = gollum_file.path
       end
     end
   end

lib/gitlab/gitaly_client/operation_service.rb

@@ -10,7 +10,7 @@ module Gitlab
         request = Gitaly::UserDeleteTagRequest.new(
           repository: @gitaly_repo,
           tag_name: GitalyClient.encode(tag_name),
-          user: Util.gitaly_user(user)
+          user: Gitlab::Git::User.from_gitlab(user).to_gitaly
         )
 
         response = GitalyClient.call(@repository.storage, :operation_service, :user_delete_tag, request)
@@ -23,7 +23,7 @@ module Gitlab
       def add_tag(tag_name, user, target, message)
         request = Gitaly::UserCreateTagRequest.new(
           repository: @gitaly_repo,
-          user: Util.gitaly_user(user),
+          user: Gitlab::Git::User.from_gitlab(user).to_gitaly,
           tag_name: GitalyClient.encode(tag_name),
           target_revision: GitalyClient.encode(target),
           message: GitalyClient.encode(message.to_s)
@@ -45,7 +45,7 @@ module Gitlab
         request = Gitaly::UserCreateBranchRequest.new(
           repository: @gitaly_repo,
           branch_name: GitalyClient.encode(branch_name),
-          user: Util.gitaly_user(user),
+          user: Gitlab::Git::User.from_gitlab(user).to_gitaly,
           start_point: GitalyClient.encode(start_point)
         )
         response = GitalyClient.call(@repository.storage, :operation_service,
@@ -65,7 +65,7 @@ module Gitlab
         request = Gitaly::UserDeleteBranchRequest.new(
           repository: @gitaly_repo,
           branch_name: GitalyClient.encode(branch_name),
-          user: Util.gitaly_user(user)
+          user: Gitlab::Git::User.from_gitlab(user).to_gitaly
         )
 
         response = GitalyClient.call(@repository.storage, :operation_service, :user_delete_branch, request)
@@ -87,7 +87,7 @@ module Gitlab
         request_enum.push(
           Gitaly::UserMergeBranchRequest.new(
             repository: @gitaly_repo,
-            user: Util.gitaly_user(user),
+            user: Gitlab::Git::User.from_gitlab(user).to_gitaly,
             commit_id: source_sha,
             branch: GitalyClient.encode(target_branch),
             message: GitalyClient.encode(message)

lib/gitlab/gitaly_client/util.rb

@@ -18,16 +18,6 @@ module Gitlab
           )
         end
 
-        def gitaly_user(gitlab_user)
-          return unless gitlab_user
-
-          Gitaly::User.new(
-            gl_id: Gitlab::GlId.gl_id(gitlab_user),
-            name: GitalyClient.encode(gitlab_user.name),
-            email: GitalyClient.encode(gitlab_user.email)
-          )
-        end
-
         def gitlab_tag_from_gitaly_tag(repository, gitaly_tag)
           if gitaly_tag.target_commit.present?
             commit = Gitlab::Git::Commit.decorate(repository, gitaly_tag.target_commit)

lib/gitlab/logger.rb

@@ -13,7 +13,7 @@ module Gitlab
     end
 
     def self.read_latest
-      path = Rails.root.join("log", file_name)
+      path = self.full_log_path
 
       return [] unless File.readable?(path)
 
@@ -22,7 +22,15 @@ module Gitlab
     end
 
     def self.build
-      new(Rails.root.join("log", file_name))
+      RequestStore[self.cache_key] ||= new(self.full_log_path)
+    end
+
+    def self.full_log_path
+      Rails.root.join("log", file_name)
+    end
+
+    def self.cache_key
+      'logger:'.freeze + self.full_log_path.to_s
     end
   end
 end

lib/gitlab/performance_bar/peek_query_tracker.rb

@@ -36,8 +36,8 @@ module Gitlab
       end
 
       def track_query(raw_query, bindings, start, finish)
-        query = Gitlab::Sherlock::Query.new(raw_query, start, finish)
-        query_info = { duration: query.duration.round(3), sql: query.formatted_query }
+        duration = finish - start
+        query_info = { duration: duration.round(3), sql: raw_query }
 
         PEEK_DB_CLIENT.query_details << query_info
       end

lib/omni_auth/strategies/bitbucket.rb

@@ -36,6 +36,10 @@ module OmniAuth
         email_response = access_token.get('api/2.0/user/emails').parsed
         @emails ||= email_response && email_response['values'] || nil
       end
+
+      def callback_url
+        options[:redirect_uri] || (full_host + script_name + callback_path)
+      end
     end
   end
 end