Cherry-pick the commit from MySQL 5.7.19, and adapt the test case:

commit 45c933ac19c73a3e9c756a87ee1ba18ba1ac564c
Author: Aakanksha Verma <aakanksha.verma@oracle.com>
Date:   Tue Mar 21 10:31:43 2017 +0530

    Bug #25189192   ERRORS WHEN RESTARTING MYSQL AFTER RENAME TABLE.

    PROBLEM

    While renaming table innodb doesn't update the InnoDB Dictionary table
    INNODB_SYS_DATAFILES incase there is change in database while doing
    rename table. Hence on a restart the server log shows error that it
    couldnt find table with old path before rename which has actually been
    renamed. So the errors would only vanish if we update the system
    tablespace

    FIX

    Update the innodb dictionary table with new path in the case there is
    not a change in the table but the database holding the table as well.

    Reviewed-by: Jimmy Yang<Jimmy.Yang@oracle.com>
    RB: 15751