storage/innobase/handler/ha_innodb.h:
  Rename: sql/ha_innodb.h -> storage/innobase/handler/ha_innodb.h
libmysqld/Makefile.am:
  Removed Innodb specific mention
sql/Makefile.am:
  Updated to remove innodb
storage/innobase/CMakeLists.txt:
  Added include directory
storage/innobase/Makefile.am:
  Updated to add in handler
storage/innobase/handler/ha_innodb.cc:
  Adjusted include files, also disabled replication code which was not being used.
storage/innobase/plug.in:
  Added additional Makefile
storage/innobase/handler/Makefile.am:
  New BitKeeper file ``storage/innobase/handler/Makefile.am''