- Added --verbose to BUILD scripts to get make to write out compile commands.
- Detect if AM_EXTRA_MAKEFLAGS=VERBOSE=1 was used with build scripts.
- Don't write warnings about replication variables when doing bootstrap.
- Fixed that mysql_cond_wait() and mysql_cond_timedwait() will report original source file in case of errors.
- Ignore some compiler warnings

BUILD/FINISH.sh:
  Detect if AM_EXTRA_MAKEFLAGS=VERBOSE=1 or --verbose was used
BUILD/SETUP.sh:
  Added --verbose to print out the full compile lines
  Updated help message
client/mysqltest.cc:
  Fixed that one can use 'replace' with cat_file
cmake/configure.pl:
  If --verbose is used, get make to write out compile commands
debian/dist/Debian/rules:
  Added $AM_EXTRA_MAKEFLAGS to get VERBOSE=1 on buildbot builds
debian/dist/Ubuntu/rules:
  Added $AM_EXTRA_MAKEFLAGS to get VERBOSE=1 on buildbot builds
include/my_pthread.h:
  Made set_timespec_time_nsec() more portable.
include/mysql/psi/mysql_thread.h:
  Fixed that mysql_cond_wait() and mysql_cond_timedwait() will report original source file in case of errors.
mysql-test/suite/innodb/r/auto_increment_dup.result:
  Fixed wrong DBUG_SYNC
mysql-test/suite/innodb/t/auto_increment_dup.test:
  Fixed wrong DBUG_SYNC
mysql-test/suite/perfschema/include/upgrade_check.inc:
  Make test more portable for changes in *.sql files
mysql-test/suite/perfschema/r/pfs_upgrade.result:
  Updated test results
mysql-test/valgrind.supp:
  Ignore running Aria checkpoint thread
scripts/mysqlaccess.sh:
  Changed reference of bugs database
  Ensure that also client-server group is read.
sql/handler.cc:
  Added missing syncpoint
sql/mysqld.cc:
  Don't write warnings about replication variables when doing bootstrap
sql/mysqld.h:
  Don't write warnings about replication variables when doing bootstrap
sql/rpl_rli.cc:
  Don't write warnings about replication variables when doing bootstrap
sql/sql_insert.cc:
  Don't mask SERVER_SHUTDOWN in insert_delayed
  This is done to be able to distingush between shutdown and interrupt errors
support-files/compiler_warnings.supp:
  Ignore some compiler warnings in xtradb,innobase, oqgraph, yassl, string3.h