MDEV-12290 Wrong timestamps in binary log causes replication issues

Binlog_background_thread does not make a call to set_time(), And when
we call binlog_checkpoint_log_event->write() , we write the wrong timestamp.
In this patch we correct this by calling thd->set_time().

sql/log.cc

@@ -9278,7 +9278,9 @@ binlog_background_thread(void *arg __attribute__((unused)))
     while (queue)
     {
       THD_STAGE_INFO(thd, stage_binlog_processing_checkpoint_notify);
-      DEBUG_SYNC(current_thd, "binlog_background_thread_before_mark_xid_done");
+      DEBUG_SYNC(thd, "binlog_background_thread_before_mark_xid_done");
+      /* Set the thread start time */
+      thd->set_time();
       /* Grab next pointer first, as mark_xid_done() may free the element. */
       next= queue->next_in_queue;
       mysql_bin_log.mark_xid_done(queue->binlog_id, true);