Merge remote-tracking branch 'origin/master' into with-pipeline-view

CHANGELOG

@@ -5,6 +5,7 @@ v 8.8.0 (unreleased)
   - Fix error when using link to uploads in global snippets
   - Assign labels and milestone to target project when moving issue. !3934 (Long Nguyen)
   - Use a case-insensitive comparison in sanitizing URI schemes
+  - Toggle sign-up confirmation emails in application settings
   - Project#open_branches has been cleaned up and no longer loads entire records into memory.
   - Escape HTML in commit titles in system note messages
   - Improve multiple branch push performance by memoizing permission checking
@@ -15,6 +16,7 @@ v 8.8.0 (unreleased)
   - Make build status canceled if any of the jobs was canceled and none failed
   - Upgrade Sidekiq to 4.1.2
   - Added /health_check endpoint for checking service status
+  - Make 'upcoming' filter for milestones work better across projects
   - Sanitize repo paths in new project error message
   - Bump mail_room to 0.7.0 to fix stuck IDLE connections
   - Remove future dates from contribution calendar graph.
@@ -25,9 +27,11 @@ v 8.8.0 (unreleased)
   - Update SVG sanitizer to conform to SVG 1.1
   - Speed up push emails with multiple recipients by only generating the email once
   - Updated search UI
+  - Added authentication service for Container Registry
   - Display informative message when new milestone is created
   - Sanitize milestones and labels titles
   - Support multi-line tag messages. !3833 (Calin Seciu)
+  - Force users to reset their password after an admin changes it
   - Allow "NEWS" and "CHANGES" as alternative names for CHANGELOG. !3768 (Connor Shea)
   - Added button to toggle whitespaces changes on diff view
   - Backport GitHub Enterprise import support from EE
@@ -43,7 +47,7 @@ v 8.8.0 (unreleased)
   - API support for the 'since' and 'until' operators on commit requests (Paco Guzman)
   - Fix Gravatar hint in user profile when Gravatar is disabled. !3988 (Artem Sidorenko)
   - Expire repository exists? and has_visible_content? caches after a push if necessary
-  - Fix unintentional filtering bug in issues sorted by milestone due (Takuya Noguchi)
+  - Fix unintentional filtering bug in Issue/MR sorted by milestone due (Takuya Noguchi)
   - Fix adding a todo for private group members (Ahmad Sherif)
   - Bump ace-rails-ap gem version from 2.0.1 to 4.0.2 which upgrades Ace Editor from 1.1.2 to 1.2.3
   - Total method execution timings are no longer tracked
@@ -51,6 +55,11 @@ v 8.8.0 (unreleased)
   - Add API endpoints for un/subscribing from/to a label. !4051 (Ahmad Sherif)
   - Hide left sidebar on phone screens to give more space for content
   - Redesign navigation for profile and group pages
+  - Add counter metrics for rails cache
+  - Import pull requests from GitHub where the source or target branches were removed
+
+v 8.7.6
+  - Fix links on wiki pages for relative url setups. !4131 (Artem Sidorenko)
 
 v 8.7.5
   - Fix relative links in wiki pages. !4050

Gemfile

@@ -36,6 +36,7 @@ gem 'omniauth-shibboleth',    '~> 1.2.0'
 gem 'omniauth-twitter',       '~> 1.2.0'
 gem 'omniauth_crowd',         '~> 2.2.0'
 gem 'rack-oauth2',            '~> 1.2.1'
+gem 'jwt'
 
 # Spam and anti-bot protection
 gem 'recaptcha', require: 'recaptcha/rails'
@@ -224,6 +225,7 @@ gem 'request_store',      '~> 1.3.0'
 gem 'select2-rails',      '~> 3.5.9'
 gem 'virtus',             '~> 1.0.1'
 gem 'net-ssh',            '~> 3.0.1'
+gem 'base32',             '~> 0.3.0'
 
 # Sentry integration
 gem 'sentry-raven', '~> 0.15'

Gemfile.lock

@@ -70,6 +70,7 @@ GEM
       ice_nine (~> 0.11.0)
       thread_safe (~> 0.3, >= 0.3.1)
     babosa (1.0.2)
+    base32 (0.3.2)
     bcrypt (3.1.10)
     benchmark-ips (2.3.0)
     better_errors (1.0.1)
@@ -893,6 +894,7 @@ DEPENDENCIES
   attr_encrypted (~> 1.3.4)
   awesome_print (~> 1.2.0)
   babosa (~> 1.0.2)
+  base32 (~> 0.3.0)
   benchmark-ips
   better_errors (~> 1.0.1)
   binding_of_caller (~> 0.7.2)
@@ -954,6 +956,7 @@ DEPENDENCIES
   jquery-rails (~> 4.1.0)
   jquery-turbolinks (~> 2.1.0)
   jquery-ui-rails (~> 5.0.0)
+  jwt
   kaminari (~> 0.16.3)
   letter_opener_web (~> 1.3.0)
   licensee (~> 8.0.0)

app/assets/javascripts/notes.js.coffee

@@ -285,6 +285,7 @@ class @Notes
     form.addClass "js-main-target-form"
 
     form.find("#note_line_code").remove()
+    form.find("#note_type").remove()
 
   ###
   General note form setup.
@@ -472,6 +473,7 @@ class @Notes
   setupDiscussionNoteForm: (dataHolder, form) =>
     # setup note target
     form.attr 'id', "new-discussion-note-form-#{dataHolder.data("discussionId")}"
+    form.find("#note_type").val dataHolder.data("noteType")
     form.find("#line_type").val dataHolder.data("lineType")
     form.find("#note_commit_id").val dataHolder.data("commitId")
     form.find("#note_line_code").val dataHolder.data("lineCode")

app/assets/stylesheets/framework/gitlab-theme.scss

@@ -9,6 +9,8 @@
 @mixin gitlab-theme($color-light, $color, $color-darker, $color-dark) {
   .page-with-sidebar {
     .header-logo {
+      background: $color-darker;
+
       a {
         color: $color-light;
 
@@ -88,8 +90,8 @@
 }
 
 $theme-blue: #2980b9;
-$theme-charcoal: #333c47;
-$theme-graphite: #888;
+$theme-charcoal: #3d454d;
+$theme-graphite: #666;
 $theme-gray: #373737;
 $theme-green: #019875;
 $theme-violet: #548;
@@ -100,11 +102,11 @@ body {
   }
 
   &.ui_charcoal {
-    @include gitlab-theme(#c5d0de, $theme-charcoal, #2b333d, #24272d);
+    @include gitlab-theme(#d6d7d9, #485157, $theme-charcoal, #353b41);
   }
 
   &.ui_graphite {
-    @include gitlab-theme(#ccc, $theme-graphite, #777, #666);
+    @include gitlab-theme(#ccc, #777, $theme-graphite, #555);
   }
 
   &.ui_gray {

app/assets/stylesheets/pages/notes.scss

@@ -226,8 +226,7 @@ ul.notes {
   }
 }
 
-.note-action-button,
-.discussion-action-button {
+.note-action-button {
   display: inline-block;
   margin-left: 10px;
   line-height: 24px;

app/controllers/admin/application_settings_controller.rb

@@ -106,6 +106,7 @@ class Admin::ApplicationSettingsController < Admin::ApplicationController
       :email_author_in_body,
       :repository_checks_enabled,
       :metrics_packet_size,
+      :send_user_confirmation_email,
       restricted_visibility_levels: [],
       import_sources: [],
       disabled_oauth_sign_in_sources: []

app/controllers/admin/users_controller.rb

@@ -119,6 +119,7 @@ class Admin::UsersController < Admin::ApplicationController
       user_params_with_pass.merge!(
         password: params[:user][:password],
         password_confirmation: params[:user][:password_confirmation],
+        password_expires_at: Time.now
       )
     end
 

app/controllers/jwt_controller.rb

+class JwtController < ApplicationController
+  skip_before_action :authenticate_user!
+  skip_before_action :verify_authenticity_token
+  before_action :authenticate_project_or_user
+
+  SERVICES = {
+    Auth::ContainerRegistryAuthenticationService::AUDIENCE => Auth::ContainerRegistryAuthenticationService,
+  }
+
+  def auth
+    service = SERVICES[params[:service]]
+    return head :not_found unless service
+
+    result = service.new(@project, @user, auth_params).execute
+
+    render json: result, status: result[:http_status]
+  end
+
+  private
+
+  def authenticate_project_or_user
+    authenticate_with_http_basic do |login, password|
+      # if it's possible we first try to authenticate project with login and password
+      @project = authenticate_project(login, password)
+      return if @project
+
+      @user = authenticate_user(login, password)
+      return if @user
+
+      render_403
+    end
+  end
+
+  def auth_params
+    params.permit(:service, :scope, :offline_token, :account, :client_id)
+  end
+
+  def authenticate_project(login, password)
+    if login == 'gitlab_ci_token'
+      Project.find_by(builds_enabled: true, runners_token: password)
+    end
+  end
+
+  def authenticate_user(login, password)
+    # TODO: this is a copy and paste from grack_auth,
+    # it should be refactored in the future
+
+    user = Gitlab::Auth.new.find(login, password)
+
+    # If the user authenticated successfully, we reset the auth failure count
+    # from Rack::Attack for that IP. A client may attempt to authenticate
+    # with a username and blank password first, and only after it receives
+    # a 401 error does it present a password. Resetting the count prevents
+    # false positives from occurring.
+    #
+    # Otherwise, we let Rack::Attack know there was a failed authentication
+    # attempt from this IP. This information is stored in the Rails cache
+    # (Redis) and will be used by the Rack::Attack middleware to decide
+    # whether to block requests from this IP.
+    config = Gitlab.config.rack_attack.git_basic_auth
+
+    if config.enabled
+      if user
+        # A successful login will reset the auth failure count from this IP
+        Rack::Attack::Allow2Ban.reset(request.ip, config)
+      else
+        banned = Rack::Attack::Allow2Ban.filter(request.ip, config) do
+          # Unless the IP is whitelisted, return true so that Allow2Ban
+          # increments the counter (stored in Rails.cache) for the IP
+          if config.ip_whitelist.include?(request.ip)
+            false
+          else
+            true
+          end
+        end
+
+        if banned
+          Rails.logger.info "IP #{request.ip} failed to login " \
+              "as #{login} but has been temporarily banned from Git auth"
+          return
+        end
+      end
+    end
+
+    user
+  end
+end

app/controllers/projects/commit_controller.rb

@@ -17,12 +17,12 @@ class Projects::CommitController < Projects::ApplicationController
   def show
     apply_diff_view_cookie!
 
-    @line_notes = commit.notes.inline
+    @grouped_diff_notes = commit.notes.grouped_diff_notes
+
     @note = @project.build_commit_note(commit)
-    @notes = commit.notes.not_inline.fresh
+    @notes = commit.notes.non_diff_notes.fresh
     @noteable = @commit
-    @comments_allowed = @reply_allowed = true
-    @comments_target  = {
+    @comments_target = {
       noteable_type: 'Commit',
       commit_id: @commit.id
     }
@@ -67,10 +67,10 @@ class Projects::CommitController < Projects::ApplicationController
     create_commit(Commits::RevertService, success_notice: "The #{@commit.change_type_title} has been successfully reverted.",
                                           success_path: successful_change_path, failure_path: failed_change_path)
   end
-  
+
   def cherry_pick
     assign_change_commit_vars(@commit.cherry_pick_branch_name)
-    
+
     return render_404 if @target_branch.blank?
 
     create_commit(Commits::CherryPickService, success_notice: "The #{@commit.change_type_title} has been successfully cherry-picked.",

app/controllers/projects/compare_controller.rb

@@ -22,7 +22,8 @@ class Projects::CompareController < Projects::ApplicationController
       @base_commit = @project.merge_base_commit(@base_ref, @head_ref)
       @diffs = compare.diffs(diff_options)
       @diff_refs = [@base_commit, @commit]
-      @line_notes = []
+      @diff_notes_disabled = true
+      @grouped_diff_notes = {}
     end
   end
 

app/controllers/projects/merge_requests_controller.rb

@@ -73,12 +73,12 @@ class Projects::MergeRequestsController < Projects::ApplicationController
     # but we need it for the "View file @ ..." link by deleted files
     @base_commit ||= @merge_request.first_commit.parent || @merge_request.first_commit
 
-    @comments_allowed = @reply_allowed = true
     @comments_target = {
       noteable_type: 'MergeRequest',
       noteable_id: @merge_request.id
     }
-    @line_notes = @merge_request.notes.where("line_code is not null")
+
+    @grouped_diff_notes = @merge_request.notes.grouped_diff_notes
 
     respond_to do |format|
       format.html
@@ -117,6 +117,7 @@ class Projects::MergeRequestsController < Projects::ApplicationController
     @commit = @merge_request.last_commit
     @base_commit = @merge_request.diff_base_commit
     @diffs = @merge_request.compare.diffs(diff_options) if @merge_request.compare
+    @diff_notes_disabled = true
 
     @ci_commit = @merge_request.ci_commit
     @statuses = @ci_commit.statuses if @ci_commit
@@ -300,7 +301,7 @@ class Projects::MergeRequestsController < Projects::ApplicationController
     # Build a note object for comment form
     @note = @project.notes.new(noteable: @merge_request)
     @notes = @merge_request.mr_and_commit_notes.nonawards.inc_author.fresh
-    @discussions = Note.discussions_from_notes(@notes)
+    @discussions = @notes.discussions
     @noteable = @merge_request
 
     # Get commits from repository

app/controllers/projects/notes_controller.rb

@@ -96,7 +96,7 @@ class Projects::NotesController < Projects::ApplicationController
   end
 
   def note_to_discussion_html(note)
-    return unless note.for_diff_line?
+    return unless note.diff_note?
 
     if params[:view] == 'parallel'
       template = "projects/notes/_diff_notes_with_reply_parallel"
@@ -120,7 +120,7 @@ class Projects::NotesController < Projects::ApplicationController
   end
 
   def note_to_discussion_with_diff_html(note)
-    return unless note.for_diff_line?
+    return unless note.diff_note?
 
     render_to_string(
       "projects/notes/_discussion",
@@ -158,7 +158,7 @@ class Projects::NotesController < Projects::ApplicationController
   def note_params
     params.require(:note).permit(
       :note, :noteable, :noteable_id, :noteable_type, :project_id,
-      :attachment, :line_code, :commit_id
+      :attachment, :line_code, :commit_id, :type
     )
   end
 

app/controllers/projects_controller.rb

@@ -235,7 +235,8 @@ class ProjectsController < Projects::ApplicationController
   def project_params
     params.require(:project).permit(
       :name, :path, :description, :issues_tracker, :tag_list, :runners_token,
-      :issues_enabled, :merge_requests_enabled, :snippets_enabled, :issues_tracker_id, :default_branch,
+      :issues_enabled, :merge_requests_enabled, :snippets_enabled, :container_registry_enabled,
+      :issues_tracker_id, :default_branch,
       :wiki_enabled, :visibility_level, :import_url, :last_activity_at, :namespace_id, :avatar,
       :builds_enabled, :build_allow_git_fetch, :build_timeout_in_minutes, :build_coverage_regex,
       :public_builds,

app/controllers/registrations_controller.rb

@@ -37,8 +37,8 @@ class RegistrationsController < Devise::RegistrationsController
     super
   end
 
-  def after_sign_up_path_for(_resource)
-    users_almost_there_path
+  def after_sign_up_path_for(user)
+    user.confirmed_at.present? ? dashboard_projects_path : users_almost_there_path
   end
 
   def after_inactive_sign_up_path_for(_resource)

app/finders/issuable_finder.rb

@@ -252,8 +252,8 @@ class IssuableFinder
       if filter_by_no_milestone?
         items = items.where(milestone_id: [-1, nil])
       elsif filter_by_upcoming_milestone?
-        upcoming = Milestone.where(project_id: projects).upcoming
-        items = items.joins(:milestone).where(milestones: { title: upcoming.try(:title) })
+        upcoming_ids = Milestone.upcoming_ids_by_projects(projects)
+        items = items.joins(:milestone).where(milestone_id: upcoming_ids)
       else
         items = items.joins(:milestone).where(milestones: { title: params[:milestone_title] })
 

app/finders/notes_finder.rb

@@ -10,7 +10,7 @@ class NotesFinder
     notes =
       case target_type
       when "commit"
-        project.notes.for_commit_id(target_id).not_inline
+        project.notes.for_commit_id(target_id).non_diff_notes
       when "issue"
         project.issues.find(target_id).notes.nonawards.inc_author
       when "merge_request"

app/helpers/diff_helper.rb

@@ -55,22 +55,18 @@ module DiffHelper
     end
   end
 
-  def line_comments
-    @line_comments ||= @line_notes.select(&:active?).sort_by(&:created_at).group_by(&:line_code)
-  end
-
-  def organize_comments(type_left, type_right, line_code_left, line_code_right)
-    comments_left = comments_right = nil
+  def organize_comments(left, right)
+    notes_left = notes_right = nil
 
-    unless type_left.nil? && type_right == 'new'
-      comments_left = line_comments[line_code_left]
+    unless left[:type].nil? && right[:type] == 'new'
+      notes_left = @grouped_diff_notes[left[:line_code]]
     end
 
-    unless type_left.nil? && type_right.nil?
-      comments_right = line_comments[line_code_right]
+    unless left[:type].nil? && right[:type].nil?
+      notes_right = @grouped_diff_notes[right[:line_code]]
     end
 
-    [comments_left, comments_right]
+    [notes_left, notes_right]
   end
 
   def inline_diff_btn
@@ -96,8 +92,8 @@ module DiffHelper
     ].join(' ').html_safe
   end
 
-  def commit_for_diff(diff)
-    if diff.deleted_file
+  def commit_for_diff(diff_file)
+    if diff_file.deleted_file
       @base_commit || @commit.parent || @commit
     else
       @commit

app/helpers/events_helper.rb

@@ -3,7 +3,7 @@ module EventsHelper
     author = event.author
 
     if author
-      link_to author.name, user_path(author.username), title: h(author.name)
+      link_to author.name, user_path(author.username), title: author.name
     else
       event.author_name
     end
@@ -57,11 +57,7 @@ module EventsHelper
       words << event.ref_name
       words << "at"
     elsif event.commented?
-      if event.note_commit?
-        words << event.note_short_commit_id
-      else
-        words << "##{truncate event.note_target_iid}"
-      end
+      words << event.note_target_reference
       words << "at"
     elsif event.milestone?
       words << "##{event.target_iid}" if event.target_iid
@@ -84,21 +80,12 @@ module EventsHelper
     elsif event.merge_request?
       namespace_project_merge_request_url(event.project.namespace,
                                           event.project, event.merge_request)
-    elsif event.note? && event.note_commit?
+    elsif event.note? && event.commit_note?
       namespace_project_commit_url(event.project.namespace, event.project,
                                    event.note_target)
     elsif event.note?
       if event.note_target
-        if event.note_commit?
-          namespace_project_commit_path(event.project.namespace, event.project,
-                                        event.note_commit_id,
-                                        anchor: dom_id(event.target))
-        elsif event.note_project_snippet?
-          namespace_project_snippet_path(event.project.namespace,
-                                         event.project, event.note_target)
-        else
-          event_note_target_path(event)
-        end
+        event_note_target_path(event)
       end
     elsif event.push?
       push_event_feed_url(event)
@@ -134,42 +121,30 @@ module EventsHelper
   end
 
   def event_note_target_path(event)
-    if event.note? && event.note_commit?
-      namespace_project_commit_path(event.project.namespace, event.project,
-                                    event.note_target)
+    if event.note? && event.commit_note?
+      namespace_project_commit_path(event.project.namespace,
+                                    event.project,
+                                    event.note_target,
+                                    anchor: dom_id(event.target))
+    elsif event.project_snippet_note?
+      namespace_project_snippet_path(event.project.namespace,
+                                     event.project,
+                                     event.note_target,
+                                     anchor: dom_id(event.target))
     else
       polymorphic_path([event.project.namespace.becomes(Namespace),
                         event.project, event.note_target],
-                       anchor: dom_id(event.target))
+                        anchor: dom_id(event.target))
     end
   end
 
   def event_note_title_html(event)
     if event.note_target
-      if event.note_commit?
-        link_to(
-          namespace_project_commit_path(event.project.namespace, event.project,
-                                        event.note_commit_id,
-                                        anchor: dom_id(event.target), title: h(event.target_title)),
-          class: "commit_short_id"
-        ) do
-          "#{event.note_target_type} #{event.note_short_commit_id}"
-        end
-      elsif event.note_project_snippet?
-        link_to(namespace_project_snippet_path(event.project.namespace,
-                                               event.project,
-                                               event.note_target), title: h(event.project.name)) do
-          "#{event.note_target_type} #{truncate event.note_target.to_reference}"
-        end
-      else
-        link_to event_note_target_path(event) do
-          "#{event.note_target_type} #{truncate event.note_target.to_reference}"
-        end
+      link_to(event_note_target_path(event), title: event.target_title, class: 'has-tooltip') do
+        "#{event.note_target_type} #{event.note_target_reference}"
       end
     else
-      content_tag :strong do
-        "(deleted)"
-      end
+      content_tag(:strong, '(deleted)')
     end
   end
 

app/helpers/notes_helper.rb

 module NotesHelper
   # Helps to distinguish e.g. commit notes in mr notes list
   def note_for_main_target?(note)
-    (@noteable.class.name == note.noteable_type && !note.for_diff_line?)
+    @noteable.class.name == note.noteable_type && !note.diff_note?
   end
 
   def note_target_fields(note)
@@ -15,16 +15,6 @@ module NotesHelper
     note.editable? && can?(current_user, :admin_note, note)
   end
 
-  def link_to_commit_diff_line_note(note)
-    if note.for_commit_diff_line?
-      link_to(
-        "#{note.diff_file_name}:L#{note.diff_new_line}",
-        namespace_project_commit_path(@project.namespace, @project,
-                                      note.noteable, anchor: note.line_code)
-      )
-    end
-  end
-
   def noteable_json(noteable)
     {
       id: noteable.id,
@@ -35,7 +25,7 @@ module NotesHelper
   end
 
   def link_to_new_diff_note(line_code, line_type = nil)
-    discussion_id = Note.build_discussion_id(
+    discussion_id = LegacyDiffNote.build_discussion_id(
       @comments_target[:noteable_type],
       @comments_target[:noteable_id] || @comments_target[:commit_id],
       line_code
@@ -45,9 +35,10 @@ module NotesHelper
       noteable_type: @comments_target[:noteable_type],
       noteable_id:   @comments_target[:noteable_id],
       commit_id:     @comments_target[:commit_id],
+      line_type:     line_type,
       line_code:     line_code,
-      discussion_id: discussion_id,
-      line_type:     line_type
+      note_type:     LegacyDiffNote.name,
+      discussion_id: discussion_id
     }
 
     button_tag(class: 'btn add-diff-note js-add-diff-note-button',
@@ -57,18 +48,24 @@ module NotesHelper
     end
   end
 
-  def link_to_reply_diff(note, line_type = nil)
+  def link_to_reply_discussion(note, line_type = nil)
     return unless current_user
 
     data = {
       noteable_type: note.noteable_type,
       noteable_id:   note.noteable_id,
       commit_id:     note.commit_id,
-      line_code:     note.line_code,
       discussion_id: note.discussion_id,
       line_type:     line_type
     }
 
+    if note.diff_note?
+      data.merge!(
+        line_code: note.line_code,
+        note_type: LegacyDiffNote.name
+      )
+    end
+
     button_tag 'Reply...', class: 'btn btn-text-field js-discussion-reply-button',
                            data: data, title: 'Add a reply'
   end

app/models/ability.rb

@@ -61,6 +61,7 @@ class Ability
           :read_merge_request,
           :read_note,
           :read_commit_status,
+          :read_container_image,
           :download_code
         ]
 
@@ -203,6 +204,7 @@ class Ability
         :admin_label,
         :read_commit_status,
         :read_build,
+        :read_container_image,
         :read_pipeline,
       ]
     end
@@ -219,7 +221,9 @@ class Ability
         :update_pipeline,
         :create_merge_request,
         :create_wiki,
-        :push_code
+        :push_code,
+        :create_container_image,
+        :update_container_image,
       ]
     end
 
@@ -246,6 +250,7 @@ class Ability
         :admin_project,
         :admin_commit_status,
         :admin_build,
+        :admin_container_image,
         :admin_pipeline
       ]
     end
@@ -292,6 +297,10 @@ class Ability
         rules += named_abilities('pipeline')
       end
 
+      unless project.container_registry_enabled
+        rules += named_abilities('container_image')
+      end
+
       rules
     end
 

app/models/application_setting.rb

@@ -120,7 +120,8 @@ class ApplicationSetting < ActiveRecord::Base
       recaptcha_enabled: false,
       akismet_enabled: false,
       repository_checks_enabled: true,
-      disabled_oauth_sign_in_sources: []
+      disabled_oauth_sign_in_sources: [],
+      send_user_confirmation_email: false
     )
   end
 

app/models/event.rb

@@ -80,7 +80,7 @@ class Event < ActiveRecord::Base
   end
 
   def target_title
-    target.title if target && target.respond_to?(:title)
+    target.try(:title)
   end
 
   def created?
@@ -266,28 +266,20 @@ class Event < ActiveRecord::Base
     branch? && project.default_branch != branch_name
   end
 
-  def note_commit_id
-    target.commit_id
-  end
-
   def target_iid
     target.respond_to?(:iid) ? target.iid : target_id
   end
 
-  def note_short_commit_id
-    Commit.truncate_sha(note_commit_id)
-  end
-
-  def note_commit?
-    target.noteable_type == "Commit"
+  def commit_note?
+    target.for_commit?
   end
 
   def issue_note?
-    note? && target && target.noteable_type == "Issue"
+    note? && target && target.for_issue?
   end
 
-  def note_project_snippet?
-    target.noteable_type == "Snippet"
+  def project_snippet_note?
+    target.for_snippet?
   end
 
   def note_target
@@ -295,19 +287,22 @@ class Event < ActiveRecord::Base
   end
 
   def note_target_id
-    if note_commit?
+    if commit_note?
       target.commit_id
     else
       target.noteable_id.to_s
     end
   end
 
-  def note_target_iid
-    if note_target.respond_to?(:iid)
-      note_target.iid
+  def note_target_reference
+    return unless note_target
+
+    # Commit#to_reference returns the full SHA, but we want the short one here
+    if commit_note?
+      note_target.short_id
     else
-      note_target_id
-    end.to_s
+      note_target.to_reference
+    end
   end
 
   def note_target_type

app/models/legacy_diff_note.rb

+class LegacyDiffNote < Note
+  serialize :st_diff
+
+  validates :line_code, presence: true, line_code: true
+
+  before_create :set_diff
+
+  class << self
+    def build_discussion_id(noteable_type, noteable_id, line_code, active = true)
+      [super(noteable_type, noteable_id), line_code, active].join("-")
+    end
+  end
+
+  def diff_note?
+    true
+  end
+
+  def legacy_diff_note?
+    true
+  end
+
+  def discussion_id
+    @discussion_id ||= self.class.build_discussion_id(noteable_type, noteable_id || commit_id, line_code, active?)
+  end
+
+  def diff_file_hash
+    line_code.split('_')[0] if line_code
+  end
+
+  def diff_old_line
+    line_code.split('_')[1].to_i if line_code
+  end
+
+  def diff_new_line
+    line_code.split('_')[2].to_i if line_code
+  end
+
+  def diff
+    @diff ||= Gitlab::Git::Diff.new(st_diff) if st_diff.respond_to?(:map)
+  end
+
+  def diff_file_path
+    diff.new_path.presence || diff.old_path
+  end
+
+  def diff_lines
+    @diff_lines ||= Gitlab::Diff::Parser.new.parse(diff.diff.each_line)
+  end
+
+  def diff_line
+    @diff_line ||= diff_lines.find { |line| generate_line_code(line) == self.line_code }
+  end
+
+  def diff_line_text
+    diff_line.try(:text)
+  end
+
+  def diff_line_type
+    diff_line.try(:type)
+  end
+
+  def highlighted_diff_lines
+    Gitlab::Diff::Highlight.new(diff_lines).highlight
+  end
+
+  def truncated_diff_lines
+    max_number_of_lines = 16
+    prev_match_line = nil
+    prev_lines = []
+
+    highlighted_diff_lines.each do |line|
+      if line.type == "match"
+        prev_lines.clear
+        prev_match_line = line
+      else
+        prev_lines << line
+
+        break if generate_line_code(line) == self.line_code
+
+        prev_lines.shift if prev_lines.length >= max_number_of_lines
+      end
+    end
+
+    prev_lines
+  end
+
+  # Check if this note is part of an "active" discussion
+  #
+  # This will always return true for anything except MergeRequest noteables,
+  # which have special logic.
+  #
+  # If the note's current diff cannot be matched in the MergeRequest's current
+  # diff, it's considered inactive.
+  def active?
+    return @active if defined?(@active)
+    return true if for_commit?
+    return true unless self.diff
+    return false unless noteable
+
+    noteable_diff = find_noteable_diff
+
+    if noteable_diff
+      parsed_lines = Gitlab::Diff::Parser.new.parse(noteable_diff.diff.each_line)
+
+      @active = parsed_lines.any? { |line_obj| line_obj.text == diff_line_text }
+    else
+      @active = false
+    end
+
+    @active
+  end
+
+  private
+
+  def find_diff
+    return nil unless noteable
+    return @diff if defined?(@diff)
+
+    @diff = noteable.diffs(Commit.max_diff_options).find do |d|
+      d.new_path && Digest::SHA1.hexdigest(d.new_path) == diff_file_hash
+    end
+  end
+
+  def set_diff
+    # First lets find notes with same diff
+    # before iterating over all mr diffs
+    diff = diff_for_line_code unless for_merge_request?
+    diff ||= find_diff
+
+    self.st_diff = diff.to_hash if diff
+  end
+
+  def diff_for_line_code
+    attributes = {
+      noteable_type: noteable_type,
+      line_code: line_code
+    }
+
+    if for_commit?
+      attributes[:commit_id] = commit_id
+    else
+      attributes[:noteable_id] = noteable_id
+    end
+
+    self.class.where(attributes).last.try(:diff)
+  end
+
+  def generate_line_code(line)
+    Gitlab::Diff::LineCode.generate(diff_file_path, line.new_pos, line.old_pos)
+  end
+
+  # Find the diff on noteable that matches our own
+  def find_noteable_diff
+    diffs = noteable.diffs(Commit.max_diff_options)
+    diffs.find { |d| d.new_path == self.diff.new_path }
+  end
+end

app/models/merge_request.rb

@@ -26,6 +26,10 @@ class MergeRequest < ActiveRecord::Base
   # when creating new merge request
   attr_accessor :can_be_created, :compare_commits, :compare
 
+  # Temporary fields to store target_sha, and base_sha to
+  # compare when importing pull requests from GitHub
+  attr_accessor :base_target_sha, :head_source_sha
+
   state_machine :state, initial: :opened do
     event :close do
       transition [:reopened, :opened] => :closed
@@ -490,10 +494,14 @@ class MergeRequest < ActiveRecord::Base
   end
 
   def target_sha
-    @target_sha ||= target_project.repository.commit(target_branch).try(:sha)
+    return @base_target_sha if defined?(@base_target_sha)
+
+    target_project.repository.commit(target_branch).try(:sha)
   end
 
   def source_sha
+    return @head_source_sha if defined?(@head_source_sha)
+
     last_commit.try(:sha) || source_tip.try(:sha)
   end
 

app/models/merge_request_diff.rb

@@ -6,7 +6,7 @@ class MergeRequestDiff < ActiveRecord::Base
 
   belongs_to :merge_request
 
-  delegate :target_branch, :source_branch, to: :merge_request, prefix: nil
+  delegate :head_source_sha, :target_branch, :source_branch, to: :merge_request, prefix: nil
 
   state_machine :state, initial: :empty do
     state :collected
@@ -38,8 +38,8 @@ class MergeRequestDiff < ActiveRecord::Base
       @diffs_no_whitespace ||= begin
         compare = Gitlab::Git::Compare.new(
           self.repository.raw_repository,
-          self.target_branch,
-          self.source_sha,
+          self.base,
+          self.head,
         )
         compare.diffs(options)
       end
@@ -144,7 +144,7 @@ class MergeRequestDiff < ActiveRecord::Base
 
     self.st_diffs = new_diffs
 
-    self.base_commit_sha = self.repository.merge_base(self.source_sha, self.target_branch)
+    self.base_commit_sha = self.repository.merge_base(self.head, self.base)
 
     self.save
   end
@@ -160,10 +160,24 @@ class MergeRequestDiff < ActiveRecord::Base
   end
 
   def source_sha
+    return head_source_sha if head_source_sha.present?
+
     source_commit = merge_request.source_project.commit(source_branch)
     source_commit.try(:sha)
   end
 
+  def target_sha
+    merge_request.target_sha
+  end
+
+  def base
+    self.target_sha || self.target_branch
+  end
+
+  def head
+    self.source_sha
+  end
+
   def compare
     @compare ||=
       begin
@@ -172,8 +186,8 @@ class MergeRequestDiff < ActiveRecord::Base
 
         Gitlab::Git::Compare.new(
           self.repository.raw_repository,
-          self.target_branch,
-          self.source_sha
+          self.base,
+          self.head
         )
       end
   end

app/models/milestone.rb

@@ -67,8 +67,18 @@ class Milestone < ActiveRecord::Base
     @link_reference_pattern ||= super("milestones", /(?<milestone>\d+)/)
   end
 
-  def self.upcoming
-    self.where('due_date > ?', Time.now).reorder(due_date: :asc).first
+  def self.upcoming_ids_by_projects(projects)
+    rel = unscoped.of_projects(projects).active.where('due_date > ?', Time.now)
+
+    if Gitlab::Database.postgresql?
+      rel.order(:project_id, :due_date).select('DISTINCT ON (project_id) id')
+    else
+      rel.
+        group(:project_id).
+        having('due_date = MIN(due_date)').
+        pluck(:id, :project_id, :due_date).
+        map(&:first)
+    end
   end
 
   def to_reference(from_project = nil)

app/models/note.rb

-require 'carrierwave/orm/activerecord'
-
 class Note < ActiveRecord::Base
+  extend ActiveModel::Naming
   include Gitlab::CurrentSettings
   include Participable
   include Mentionable
@@ -20,14 +19,13 @@ class Note < ActiveRecord::Base
   delegate :gfm_reference, :local_reference, to: :noteable
   delegate :name, to: :project, prefix: true
   delegate :name, :email, to: :author, prefix: true
+  delegate :title, to: :noteable, allow_nil: true
 
   before_validation :set_award!
-  before_validation :clear_blank_line_code!
 
   validates :note, :project, presence: true
   validates :note, uniqueness: { scope: [:author, :noteable_type, :noteable_id] }, if: ->(n) { n.is_award }
   validates :note, inclusion: { in: Emoji.emojis_names }, if: ->(n) { n.is_award }
-  validates :line_code, line_code: true, allow_blank: true
   # Attachments are deprecated and are handled by Markdown uploader
   validates :attachment, file_size: { maximum: :max_attachment_size }
 
@@ -41,8 +39,6 @@ class Note < ActiveRecord::Base
   scope :awards, ->{ where(is_award: true) }
   scope :nonawards, ->{ where(is_award: false) }
   scope :for_commit_id, ->(commit_id) { where(noteable_type: "Commit", commit_id: commit_id) }
-  scope :inline, ->{ where("line_code IS NOT NULL") }
-  scope :not_inline, ->{ where(line_code: nil) }
   scope :system, ->{ where(system: true) }
   scope :user, ->{ where(system: false) }
   scope :common, ->{ where(noteable_type: ["", nil]) }
@@ -50,38 +46,31 @@ class Note < ActiveRecord::Base
   scope :inc_author_project, ->{ includes(:project, :author) }
   scope :inc_author, ->{ includes(:author) }
 
+  scope :legacy_diff_notes, ->{ where(type: 'LegacyDiffNote') }
+  scope :non_diff_notes, ->{ where(type: ['Note', nil]) }
+
   scope :with_associations, -> do
     includes(:author, :noteable, :updated_by,
              project: [:project_members, { group: [:group_members] }])
   end
 
-  serialize :st_diff
-  before_create :set_diff, if: ->(n) { n.line_code.present? }
+  before_validation :clear_blank_line_code!
 
   class << self
-    def discussions_from_notes(notes)
-      discussion_ids = []
-      discussions = []
-
-      notes.each do |note|
-        next if discussion_ids.include?(note.discussion_id)
-
-        # don't group notes for the main target
-        if !note.for_diff_line? && note.for_merge_request?
-          discussions << [note]
-        else
-          discussions << notes.select do |other_note|
-            note.discussion_id == other_note.discussion_id
-          end
-          discussion_ids << note.discussion_id
-        end
-      end
+    def model_name
+      ActiveModel::Name.new(self, nil, 'note')
+    end
+
+    def build_discussion_id(noteable_type, noteable_id)
+      [:discussion, noteable_type.try(:underscore), noteable_id].join("-")
+    end
 
-      discussions
+    def discussions
+      all.group_by(&:discussion_id).values
     end
 
-    def build_discussion_id(type, id, line_code)
-      [:discussion, type.try(:underscore), id, line_code].join("-").to_sym
+    def grouped_diff_notes
+      legacy_diff_notes.select(&:active?).sort_by(&:created_at).group_by(&:line_code)
     end
 
     # Searches for notes matching the given query.
@@ -116,167 +105,39 @@ class Note < ActiveRecord::Base
     system && SystemNoteService.cross_reference?(note)
   end
 
-  def max_attachment_size
-    current_application_settings.max_attachment_size.megabytes.to_i
-  end
-
-  def find_diff
-    return nil unless noteable
-    return @diff if defined?(@diff)
-
-    # Don't use ||= because nil is a valid value for @diff
-    @diff = noteable.diffs(Commit.max_diff_options).find do |d|
-      Digest::SHA1.hexdigest(d.new_path) == diff_file_index if d.new_path
-    end
-  end
-
-  def hook_attrs
-    attributes
+  def diff_note?
+    false
   end
 
-  def set_diff
-    # First lets find notes with same diff
-    # before iterating over all mr diffs
-    diff = diff_for_line_code unless for_merge_request?
-    diff ||= find_diff
-
-    self.st_diff = diff.to_hash if diff
+  def legacy_diff_note?
+    false
   end
 
-  def diff
-    @diff ||= Gitlab::Git::Diff.new(st_diff) if st_diff.respond_to?(:map)
-  end
-
-  def diff_for_line_code
-    Note.where(noteable_id: noteable_id, noteable_type: noteable_type, line_code: line_code).last.try(:diff)
-  end
-
-  # Check if this note is part of an "active" discussion
-  #
-  # This will always return true for anything except MergeRequest noteables,
-  # which have special logic.
-  #
-  # If the note's current diff cannot be matched in the MergeRequest's current
-  # diff, it's considered inactive.
   def active?
-    return true unless self.diff
-    return false unless noteable
-    return @active if defined?(@active)
-
-    noteable_diff = find_noteable_diff
-
-    if noteable_diff
-      parsed_lines = Gitlab::Diff::Parser.new.parse(noteable_diff.diff.each_line)
-
-      @active = parsed_lines.any? { |line_obj| line_obj.text == diff_line }
-    else
-      @active = false
-    end
-
-    @active
-  end
-
-  def diff_file_index
-    line_code.split('_')[0] if line_code
-  end
-
-  def diff_file_name
-    diff.new_path if diff
+    true
   end
 
-  def file_path
-    if diff.new_path.present?
-      diff.new_path
-    elsif diff.old_path.present?
-      diff.old_path
-    end
-  end
-
-  def diff_old_line
-    line_code.split('_')[1].to_i if line_code
-  end
-
-  def diff_new_line
-    line_code.split('_')[2].to_i if line_code
-  end
-
-  def generate_line_code(line)
-    Gitlab::Diff::LineCode.generate(file_path, line.new_pos, line.old_pos)
-  end
-
-  def diff_line
-    return @diff_line if @diff_line
-
-    if diff
-      diff_lines.each do |line|
-        if generate_line_code(line) == self.line_code
-          @diff_line = line.text
-        end
-      end
-    end
-
-    @diff_line
-  end
-
-  def diff_line_type
-    return @diff_line_type if @diff_line_type
-
-    if diff
-      diff_lines.each do |line|
-        if generate_line_code(line) == self.line_code
-          @diff_line_type = line.type
-        end
-      end
-    end
-
-    @diff_line_type
-  end
-
-  def truncated_diff_lines
-    max_number_of_lines = 16
-    prev_match_line = nil
-    prev_lines = []
-
-    highlighted_diff_lines.each do |line|
-      if line.type == "match"
-        prev_lines.clear
-        prev_match_line = line
+  def discussion_id
+    @discussion_id ||=
+      if for_merge_request?
+        [:discussion, :note, id].join("-")
       else
-        prev_lines << line
-
-        break if generate_line_code(line) == self.line_code
-
-        prev_lines.shift if prev_lines.length >= max_number_of_lines
+        self.class.build_discussion_id(noteable_type, noteable_id || commit_id)
       end
-    end
-
-    prev_lines
-  end
-
-  def diff_lines
-    @diff_lines ||= Gitlab::Diff::Parser.new.parse(diff.diff.each_line)
   end
 
-  def highlighted_diff_lines
-    Gitlab::Diff::Highlight.new(diff_lines).highlight
+  def max_attachment_size
+    current_application_settings.max_attachment_size.megabytes.to_i
   end
 
-  def discussion_id
-    @discussion_id ||= Note.build_discussion_id(noteable_type, noteable_id || commit_id, line_code)
+  def hook_attrs
+    attributes
   end
 
   def for_commit?
     noteable_type == "Commit"
   end
 
-  def for_commit_diff_line?
-    for_commit? && for_diff_line?
-  end
-
-  def for_diff_line?
-    line_code.present?
-  end
-
   def for_issue?
     noteable_type == "Issue"
   end
@@ -285,10 +146,6 @@ class Note < ActiveRecord::Base
     noteable_type == "MergeRequest"
   end
 
-  def for_merge_request_diff_line?
-    for_merge_request? && for_diff_line?
-  end
-
   def for_snippet?
     noteable_type == "Snippet"
   end
@@ -361,14 +218,8 @@ class Note < ActiveRecord::Base
     self.line_code = nil if self.line_code.blank?
   end
 
-  # Find the diff on noteable that matches our own
-  def find_noteable_diff
-    diffs = noteable.diffs(Commit.max_diff_options)
-    diffs.find { |d| d.new_path == self.diff.new_path }
-  end
-
   def awards_supported?
-    (for_issue? || for_merge_request?) && !for_diff_line?
+    (for_issue? || for_merge_request?) && !diff_note?
   end
 
   def contains_emoji_only?

app/models/project.rb

@@ -22,6 +22,7 @@ class Project < ActiveRecord::Base
   default_value_for :builds_enabled, gitlab_config_features.builds
   default_value_for :wiki_enabled, gitlab_config_features.wiki
   default_value_for :snippets_enabled, gitlab_config_features.snippets
+  default_value_for :container_registry_enabled, gitlab_config_features.container_registry
   default_value_for(:shared_runners_enabled) { current_application_settings.shared_runners_enabled }
 
   # set last_activity_at to the same as created_at
@@ -49,6 +50,8 @@ class Project < ActiveRecord::Base
   attr_accessor :new_default_branch
   attr_accessor :old_path_with_namespace
 
+  alias_attribute :title, :name
+
   # Relations
   belongs_to :creator, foreign_key: 'creator_id', class_name: 'User'
   belongs_to :group, -> { where(type: Group) }, foreign_key: 'namespace_id'
@@ -327,6 +330,12 @@ class Project < ActiveRecord::Base
     @repository ||= Repository.new(path_with_namespace, self)
   end
 
+  def container_registry_url
+    if container_registry_enabled? && Gitlab.config.registry.enabled
+      "#{Gitlab.config.registry.host_with_port}/#{path_with_namespace}"
+    end
+  end
+
   def commit(id = 'HEAD')
     repository.commit(id)
   end

app/models/project_wiki.rb

@@ -40,7 +40,7 @@ class ProjectWiki
   end
 
   def wiki_base_path
-    ["/", @project.path_with_namespace, "/wikis"].join('')
+    [Gitlab.config.gitlab.relative_url_root, "/", @project.path_with_namespace, "/wikis"].join('')
   end
 
   # Returns the Gollum::Wiki object.

app/models/repository.rb

@@ -195,6 +195,10 @@ class Repository
     cache.fetch(:branch_names) { branches.map(&:name) }
   end
 
+  def branch_exists?(branch_name)
+    branch_names.include?(branch_name)
+  end
+
   def tag_names
     cache.fetch(:tag_names) { raw_repository.tag_names }
   end

app/models/user.rb

@@ -112,6 +112,7 @@ class User < ActiveRecord::Base
   before_save :ensure_external_user_rights
   after_save :ensure_namespace_correct
   after_initialize :set_projects_limit
+  before_create :check_confirmation_email
   after_create :post_create_hook
   after_destroy :post_destroy_hook
 
@@ -307,6 +308,10 @@ class User < ActiveRecord::Base
     @reset_token
   end
 
+  def check_confirmation_email
+    skip_confirmation! unless current_application_settings.send_user_confirmation_email
+  end
+
   def recently_sent_password_reset?
     reset_password_sent_at.present? && reset_password_sent_at >= 1.minute.ago
   end

app/services/auth/container_registry_authentication_service.rb

+module Auth
+  class ContainerRegistryAuthenticationService < BaseService
+    AUDIENCE = 'container_registry'
+
+    def execute
+      return error('not found', 404) unless registry.enabled
+
+      if params[:offline_token]
+        return error('forbidden', 403) unless current_user
+      else
+        return error('forbidden', 403) unless scope
+      end
+
+      { token: authorized_token(scope).encoded }
+    end
+
+    private
+
+    def authorized_token(*accesses)
+      token = JSONWebToken::RSAToken.new(registry.key)
+      token.issuer = registry.issuer
+      token.audience = params[:service]
+      token.subject = current_user.try(:username)
+      token[:access] = accesses.compact
+      token
+    end
+
+    def scope
+      return unless params[:scope]
+
+      @scope ||= process_scope(params[:scope])
+    end
+
+    def process_scope(scope)
+      type, name, actions = scope.split(':', 3)
+      actions = actions.split(',')
+      return unless type == 'repository'
+
+      process_repository_access(type, name, actions)
+    end
+
+    def process_repository_access(type, name, actions)
+      requested_project = Project.find_with_namespace(name)
+      return unless requested_project
+
+      actions = actions.select do |action|
+        can_access?(requested_project, action)
+      end
+
+      { type: type, name: name, actions: actions } if actions.present?
+    end
+
+    def can_access?(requested_project, requested_action)
+      return false unless requested_project.container_registry_enabled?
+
+      case requested_action
+      when 'pull'
+        requested_project == project || can?(current_user, :read_container_image, requested_project)
+      when 'push'
+        requested_project == project || can?(current_user, :create_container_image, requested_project)
+      else
+        false
+      end
+    end
+
+    def registry
+      Gitlab.config.registry
+    end
+  end
+end

app/views/admin/application_settings/_form.html.haml

@@ -103,6 +103,12 @@
           = f.label :signup_enabled do
             = f.check_box :signup_enabled
             Sign-up enabled
+    .form-group
+      .col-sm-offset-2.col-sm-10
+        .checkbox
+          = f.label :send_user_confirmation_email do
+            = f.check_box :send_user_confirmation_email
+            Send confirmation email on sign-up
     .form-group
       .col-sm-offset-2.col-sm-10
         .checkbox

app/views/events/event/_common.html.haml

@@ -4,7 +4,7 @@
     = event_action_name(event)
 
   - if event.target
-    %strong= link_to event.target.reference_link_text, [event.project.namespace.becomes(Namespace), event.project, event.target]
+    %strong= link_to event.target.reference_link_text, [event.project.namespace.becomes(Namespace), event.project, event.target], title: event.target_title
 
   = event_preposition(event)
 

app/views/notify/note_merge_request_email.html.haml

-- if @note.diff_file_name
+- if @note.legacy_diff_note?
   %p.details
     New comment on diff for
-    = link_to @note.diff_file_name, @target_url
+    = link_to @note.diff_file_path, @target_url
     \:
 
 = render 'note_message'

app/views/projects/diffs/_line.html.haml

@@ -15,7 +15,7 @@
         = link_text
       - else
         = link_to "", "##{line_code}", id: line_code, data: { linenumber: link_text }
-      - if @comments_allowed && can?(current_user, :create_note, @project)
+      - if !@diff_notes_disabled && can?(current_user, :create_note, @project)
         = link_to_new_diff_note(line_code)
     %td.new_line.diff-line-num{ class: type, data: { linenumber: line.new_pos } }
       - link_text = type == "old" ? " ".html_safe : line.new_pos

app/views/projects/diffs/_parallel_view.html.haml

@@ -16,7 +16,7 @@
         - else
           %td.old_line.diff-line-num{id: left[:line_code], class: "#{left[:type]} #{'empty-cell' if !left[:number]}"}
             = link_to raw(left[:number]), "##{left[:line_code]}", id: left[:line_code]
-            - if @comments_allowed && can?(current_user, :create_note, @project)
+            - if !@diff_notes_disabled && can?(current_user, :create_note, @project)
               = link_to_new_diff_note(left[:line_code], 'old')
           %td.line_content{class: "parallel noteable_line #{left[:type]} #{left[:line_code]} #{'empty-cell' if left[:text].empty?}", data: { line_code: left[:line_code] }}= diff_line_content(left[:text])
 
@@ -29,14 +29,14 @@
 
           %td.new_line.diff-line-num{id: new_line_code, class: "#{new_line_class} #{'empty-cell' if !right[:number]}", data: { linenumber: right[:number] }}
             = link_to raw(right[:number]), "##{new_line_code}", id: new_line_code
-            - if @comments_allowed && can?(current_user, :create_note, @project)
-              = link_to_new_diff_note(right[:line_code], 'new')
+            - if !@diff_notes_disabled && can?(current_user, :create_note, @project)
+              = link_to_new_diff_note(new_line_code, 'new')
           %td.line_content.parallel{class: "noteable_line #{new_line_class} #{new_line_code} #{'empty-cell' if right[:text].empty?}", data: { line_code: new_line_code }}= diff_line_content(right[:text])
 
-      - if @reply_allowed
-        - comments_left, comments_right = organize_comments(left[:type], right[:type], left[:line_code], right[:line_code])
-        - if comments_left.present? || comments_right.present?
-          = render "projects/notes/diff_notes_with_reply_parallel", notes_left: comments_left, notes_right: comments_right
+      - unless @diff_notes_disabled
+        - notes_left, notes_right = organize_comments(left, right)
+        - if notes_left.present? || notes_right.present?
+          = render "projects/notes/diff_notes_with_reply_parallel", notes_left: notes_left, notes_right: notes_right
 
 - if diff_file.diff.diff.blank? && diff_file.mode_changed?
   .file-mode-changed

app/views/projects/diffs/_text_file.html.haml

@@ -6,16 +6,15 @@
 %table.text-file.code.js-syntax-highlight{ class: too_big ? 'hide' : '' }
 
   - last_line = 0
-  - raw_diff_lines = diff_file.diff_lines.to_a
   - diff_file.highlighted_diff_lines.each_with_index do |line, index|
     - line_code = generate_line_code(diff_file.file_path, line)
     - last_line = line.new_pos
     = render "projects/diffs/line", {line: line, diff_file: diff_file, line_code: line_code}
 
-    - if @reply_allowed
-      - comments = @line_notes.select { |n| n.line_code == line_code && n.active? }.sort_by(&:created_at)
-      - unless comments.empty?
-        = render "projects/notes/diff_notes_with_reply", notes: comments, line: raw_diff_lines[index].text
+    - unless @diff_notes_disabled
+      - diff_notes = @grouped_diff_notes[line_code]
+      - if diff_notes
+        = render "projects/notes/diff_notes_with_reply", notes: diff_notes
 
   - if last_line > 0
     = render "projects/diffs/match_line", { line: "",

app/views/projects/edit.html.haml

@@ -84,6 +84,16 @@
                     %br
                     %span.descr Share code pastes with others out of git repository
 
+            - if Gitlab.config.registry.enabled
+              .form-group
+                .col-sm-offset-2.col-sm-10
+                  .checkbox
+                    = f.label :container_registry_enabled do
+                      = f.check_box :container_registry_enabled
+                      %strong Container Registry
+                      %br
+                      %span.descr Enable Container Registry for this repository
+
           = render 'builds_settings', f: f
 
           %fieldset.features

app/views/projects/notes/_diff_notes_with_reply.html.haml

-- note = notes.first # example note
--# Check if line want not changed since comment was left
-- if !defined?(line) || line == note.diff_line
-  %tr.notes_holder
-    %td.notes_line{ colspan: 2 }
-    %td.notes_content
-      %ul.notes{ data: { discussion_id: note.discussion_id } }
-        = render notes
-      .discussion-reply-holder
-        = link_to_reply_diff(note)
+- note = notes.first
+%tr.notes_holder
+  %td.notes_line{ colspan: 2 }
+  %td.notes_content
+    %ul.notes{ data: { discussion_id: note.discussion_id } }
+      = render partial: "projects/notes/note", collection: notes, as: :note
+    .discussion-reply-holder
+      = link_to_reply_discussion(note)

app/views/projects/notes/_diff_notes_with_reply_parallel.html.haml

-- note1 = notes_left.present? ? notes_left.first : nil
-- note2 = notes_right.present? ? notes_right.first : nil
+- note_left = notes_left.present? ? notes_left.first : nil
+- note_right = notes_right.present? ? notes_right.first : nil
 
 %tr.notes_holder
-  - if note1
+  - if note_left
     %td.notes_line.old
     %td.notes_content.parallel.old
-      %ul.notes{ data: { discussion_id: note1.discussion_id } }
-        = render notes_left
+      %ul.notes{ data: { discussion_id: note_left.discussion_id } }
+        = render partial: "projects/notes/note", collection: notes_left, as: :note
 
       .discussion-reply-holder
-        = link_to_reply_diff(note1, 'old')
+        = link_to_reply_discussion(note_left, 'old')
   - else
     %td.notes_line.old= ""
     %td.notes_content.parallel.old= ""
 
-  - if note2
+  - if note_right
     %td.notes_line.new
     %td.notes_content.parallel.new
-      %ul.notes{ data: { discussion_id: note2.discussion_id } }
-        = render notes_right
+      %ul.notes{ data: { discussion_id: note_right.discussion_id } }
+        = render partial: "projects/notes/note", collection: notes_right, as: :note
 
       .discussion-reply-holder
-        = link_to_reply_diff(note2, 'new')
+        = link_to_reply_discussion(note_right, 'new')
   - else
     %td.notes_line.new= ""
     %td.notes_content.parallel.new= ""

app/views/projects/notes/_discussion.html.haml

 - note = discussion_notes.first
+- expanded = !note.diff_note? || note.active?
 %li.note.note-discussion.timeline-entry
   .timeline-entry-inner
     .timeline-icon
       = link_to user_path(note.author) do
-        = image_tag avatar_icon(note.author_email), class: "avatar s40"
+        = image_tag avatar_icon(note.author), class: "avatar s40"
     .timeline-content
-      - if note.for_merge_request?
-        - (active_notes, outdated_notes) = discussion_notes.partition(&:active?)
-        = render "projects/notes/discussions/active", discussion_notes: active_notes if active_notes.length > 0
-        = render "projects/notes/discussions/outdated", discussion_notes: outdated_notes if outdated_notes.length > 0
-      - else
-        = render "projects/notes/discussions/commit", discussion_notes: discussion_notes
+      .discussion.js-toggle-container{ class: note.discussion_id }
+        .discussion-header
+          = link_to_member(@project, note.author, avatar: false)
+
+          .inline.discussion-headline-light
+            = note.author.to_reference
+            started a discussion on
+
+            - if note.for_commit?
+              - commit = note.noteable
+              - if commit
+                commit
+                = link_to commit.short_id, namespace_project_commit_path(note.project.namespace, note.project, note.noteable, anchor: note.line_code), class: 'monospace'
+              - else
+                a deleted commit
+            - else
+              - if note.active?
+                = link_to diffs_namespace_project_merge_request_path(note.project.namespace, note.project, note.noteable, anchor: note.line_code) do
+                  the diff
+              - else
+                an outdated diff
+
+            = time_ago_with_tooltip(note.created_at, placement: "bottom", html_class: "note-created-ago")
+
+          .discussion-actions
+            = link_to "#", class: "note-action-button discussion-toggle-button js-toggle-button" do
+              - if expanded
+                = icon("chevron-up")
+              - else
+                = icon("chevron-down")
+
+              Toggle discussion
+
+        .discussion-body.js-toggle-content{ class: ("hide" unless expanded) }
+          - if note.diff_note?
+            = render "projects/notes/discussions/diff_with_notes", discussion_notes: discussion_notes
+          - else
+            = render "projects/notes/discussions/notes", discussion_notes: discussion_notes

app/views/projects/notes/_form.html.haml

@@ -6,6 +6,7 @@
   = f.hidden_field :line_code
   = f.hidden_field :noteable_id
   = f.hidden_field :noteable_type
+  = f.hidden_field :type
 
   = render layout: 'projects/md_preview', locals: { preview_class: "md-preview", referenced_users: true } do
     = render 'projects/zen', f: f, attr: :note, classes: 'note-textarea js-note-text', placeholder: "Write a comment or drag your files here..."

app/views/projects/notes/_note.html.haml

+- return unless note.author
+- return if note.cross_reference_not_visible_for?(current_user)
+
 - note_editable = note_editable?(note)
-%li.timeline-entry{ id: dom_id(note), class: [dom_class(note), "note-row-#{note.id}", ('system-note' if note.system)], data: {author_id: note.author.id, editable: note_editable} }
+%li.timeline-entry{ id: dom_id(note), class: ["note", "note-row-#{note.id}", ('system-note' if note.system)], data: {author_id: note.author.id, editable: note_editable} }
   .timeline-entry-inner
     .timeline-icon
       %a{href: user_path(note.author)}
@@ -8,8 +11,8 @@
       .note-header
         = link_to_member(note.project, note.author, avatar: false)
         .inline.note-headline-light
-          = "#{note.author.to_reference}"
-          - if !note.system
+          = note.author.to_reference
+          - unless note.system
             commented
           %a{ href: "##{dom_id(note)}" }
             = time_ago_with_tooltip(note.created_at, placement: 'bottom', html_class: 'note-created-ago')

app/views/projects/notes/_notes.html.haml

@@ -2,14 +2,9 @@
   - @discussions.each do |discussion_notes|
     - note = discussion_notes.first
     - if note_for_main_target?(note)
-      - next if note.cross_reference_not_visible_for?(current_user)
-
-      = render discussion_notes
+      = render partial: "projects/notes/note", object: note, as: :note
     - else
       = render 'projects/notes/discussion', discussion_notes: discussion_notes
 - else
   - @notes.each do |note|
-    - next unless note.author
-    - next if note.cross_reference_not_visible_for?(current_user)
-
-    = render note
+    = render partial: "projects/notes/note", object: note, as: :note

app/views/projects/notes/discussions/_active.html.haml

-- note = discussion_notes.first
-.discussion.js-toggle-container{ class: note.discussion_id }
-  .discussion-header
-    = link_to_member(@project, note.author, avatar: false)
-    .inline.discussion-headline-light
-      = "#{note.author.to_reference} started a discussion"
-      = link_to diffs_namespace_project_merge_request_path(note.project.namespace, note.project, note.noteable, anchor: note.line_code) do
-        on the diff
-      = time_ago_with_tooltip(note.created_at, placement: "bottom", html_class: "discussion_updated_ago")
-    .discussion-actions
-      = link_to "#", class: "discussion-action-button discussion-toggle-button js-toggle-button" do
-        %i.fa.fa-chevron-up
-        Show/hide discussion
-
-  .discussion-body.js-toggle-content
-    = render "projects/notes/discussions/diff", discussion_notes: discussion_notes, note: note

app/views/projects/notes/discussions/_commit.html.haml

-- note = discussion_notes.first
-- commit = note.noteable
-- commit_description = commit ? 'commit' : 'a deleted commit'
-.discussion.js-toggle-container{ class: note.discussion_id }
-  .discussion-header
-    = link_to_member(@project, note.author, avatar: false)
-    .inline.discussion-headline-light
-      = "#{note.author.to_reference} started a discussion on #{commit_description}"
-      - if commit
-        = link_to(commit.short_id, namespace_project_commit_path(note.project.namespace, note.project, note.noteable), class: 'monospace')
-      = time_ago_with_tooltip(note.created_at, placement: "bottom", html_class: "discussion_updated_ago")
-    .discussion-actions
-      = link_to "#", class: "note-action-button discussion-toggle-button js-toggle-button" do
-        %i.fa.fa-chevron-up
-        Show/hide discussion
-  .discussion-body.js-toggle-content
-    - if note.for_diff_line?
-      = render "projects/notes/discussions/diff", discussion_notes: discussion_notes, note: note
-    - else
-      .panel.panel-default
-        .notes{ data: { discussion_id: discussion_notes.first.discussion_id } }
-          %ul.notes.timeline
-            = render discussion_notes
-        .discussion-reply-holder
-          = link_to_reply_diff(discussion_notes.first)

app/views/projects/notes/discussions/_diff.html.haml

-- diff = note.diff
-- if diff
-  .diff-file
-    .diff-header
-      %span
-        - if diff.deleted_file
-          = diff.old_path
-        - else
-          = diff.new_path
-          - if diff.a_mode && diff.b_mode && diff.a_mode != diff.b_mode
-            %span.file-mode= "#{diff.a_mode} → #{diff.b_mode}"
-    .diff-content.code.js-syntax-highlight
-      %table
-        - note.truncated_diff_lines.each do |line|
-          - type = line.type
-          - line_code = generate_line_code(note.file_path, line)
-          %tr.line_holder{ id: line_code, class: "#{type}" }
-            - if type == "match"
-              %td.old_line.diff-line-num= "..."
-              %td.new_line.diff-line-num= "..."
-              %td.line_content.match= line.text
-            - else
-              %td.old_line.diff-line-num{ data: { linenumber: type == "new" ? " ".html_safe : line.old_pos } }
-              %td.new_line.diff-line-num{ data: { linenumber: type == "old" ? " ".html_safe : line.new_pos } }
-              %td.line_content{ class: ['noteable_line', type, line_code], line_code: line_code }= diff_line_content(line.text, type)
-
-              - if line_code == note.line_code
-                = render "projects/notes/diff_notes_with_reply", notes: discussion_notes

app/views/projects/notes/discussions/_diff_with_notes.html.haml

+- note = discussion_notes.first
+- diff = note.diff
+- return unless diff
+
+.diff-file
+  .diff-header
+    %span
+      - if diff.deleted_file
+        = diff.old_path
+      - else
+        = diff.new_path
+        - if diff.a_mode && diff.b_mode && diff.a_mode != diff.b_mode
+          %span.file-mode= "#{diff.a_mode} → #{diff.b_mode}"
+  .diff-content.code.js-syntax-highlight
+    %table
+      - note.truncated_diff_lines.each do |line|
+        - type = line.type
+        - line_code = generate_line_code(note.diff_file_path, line)
+        %tr.line_holder{ id: line_code, class: "#{type}" }
+          - if type == "match"
+            %td.old_line.diff-line-num= "..."
+            %td.new_line.diff-line-num= "..."
+            %td.line_content.match= line.text
+          - else
+            %td.old_line.diff-line-num{ data: { linenumber: type == "new" ? " ".html_safe : line.old_pos } }
+            %td.new_line.diff-line-num{ data: { linenumber: type == "old" ? " ".html_safe : line.new_pos } }
+            %td.line_content{ class: ['noteable_line', type, line_code], line_code: line_code }= diff_line_content(line.text, type)
+
+            - if line_code == note.line_code
+              = render "projects/notes/diff_notes_with_reply", notes: discussion_notes

app/views/projects/notes/discussions/_notes.html.haml

+- note = discussion_notes.first
+.panel.panel-default
+  .notes{ data: { discussion_id: note.discussion_id } }
+    %ul.notes.timeline
+      = render partial: "projects/notes/note", collection: discussion_notes, as: :note
+  .discussion-reply-holder
+    = link_to_reply_discussion(note)

app/views/projects/notes/discussions/_outdated.html.haml

-- note = discussion_notes.first
-.discussion.js-toggle-container{ class: note.discussion_id }
-  .discussion-header
-    = link_to_member(@project, note.author, avatar: false)
-    .inline.discussion-headline-light
-      = "#{note.author.to_reference} started a discussion"
-      on the outdated diff
-      = time_ago_with_tooltip(note.created_at, placement: "bottom", html_class: "discussion_updated_ago")
-    .discussion-actions
-      = link_to "#", class: "note-action-button discussion-toggle-button js-toggle-button" do
-        %i.fa.fa-chevron-down
-        Show/hide discussion
-  .discussion-body.js-toggle-content.hide
-    = render "projects/notes/discussions/diff", discussion_notes: discussion_notes, note: note

config/gitlab.yml.example

@@ -98,6 +98,7 @@ production: &base
       wiki: true
       snippets: false
       builds: true
+      container_registry: true
 
     ## Webhook settings
     # Number of seconds to wait for HTTP response after sending webhook HTTP POST request (default: 10)
@@ -175,6 +176,14 @@ production: &base
     repository_archive_cache_worker:
       cron: "0 * * * *"
 
+  registry:
+    # enabled: true
+    # host: registry.example.com
+    # port: 5000
+    # api_url: http://localhost:5000/
+    # key: config/registry.key
+    # issuer: omnibus-certificate
+
   #
   # 2. GitLab CI settings
   # ==========================

config/initializers/1_settings.rb

@@ -206,12 +206,13 @@ Settings.gitlab['default_projects_features'] ||= {}
 Settings.gitlab['webhook_timeout'] ||= 10
 Settings.gitlab['max_attachment_size'] ||= 10
 Settings.gitlab['session_expire_delay'] ||= 10080
-Settings.gitlab.default_projects_features['issues']         = true if Settings.gitlab.default_projects_features['issues'].nil?
-Settings.gitlab.default_projects_features['merge_requests'] = true if Settings.gitlab.default_projects_features['merge_requests'].nil?
-Settings.gitlab.default_projects_features['wiki']           = true if Settings.gitlab.default_projects_features['wiki'].nil?
-Settings.gitlab.default_projects_features['snippets']       = false if Settings.gitlab.default_projects_features['snippets'].nil?
-Settings.gitlab.default_projects_features['builds']         = true if Settings.gitlab.default_projects_features['builds'].nil?
-Settings.gitlab.default_projects_features['visibility_level'] = Settings.send(:verify_constant, Gitlab::VisibilityLevel, Settings.gitlab.default_projects_features['visibility_level'], Gitlab::VisibilityLevel::PRIVATE)
+Settings.gitlab.default_projects_features['issues']             = true if Settings.gitlab.default_projects_features['issues'].nil?
+Settings.gitlab.default_projects_features['merge_requests']     = true if Settings.gitlab.default_projects_features['merge_requests'].nil?
+Settings.gitlab.default_projects_features['wiki']               = true if Settings.gitlab.default_projects_features['wiki'].nil?
+Settings.gitlab.default_projects_features['snippets']           = false if Settings.gitlab.default_projects_features['snippets'].nil?
+Settings.gitlab.default_projects_features['builds']             = true if Settings.gitlab.default_projects_features['builds'].nil?
+Settings.gitlab.default_projects_features['container_registry'] = true if Settings.gitlab.default_projects_features['container_registry'].nil?
+Settings.gitlab.default_projects_features['visibility_level']   = Settings.send(:verify_constant, Gitlab::VisibilityLevel, Settings.gitlab.default_projects_features['visibility_level'], Gitlab::VisibilityLevel::PRIVATE)
 Settings.gitlab['repository_downloads_path'] = File.join(Settings.shared['path'], 'cache/archive') if Settings.gitlab['repository_downloads_path'].nil?
 Settings.gitlab['restricted_signup_domains'] ||= []
 Settings.gitlab['import_sources'] ||= ['github','bitbucket','gitlab','gitorious','google_code','fogbugz','git']
@@ -242,6 +243,16 @@ Settings.artifacts['enabled']      = true if Settings.artifacts['enabled'].nil?
 Settings.artifacts['path']         = File.expand_path(Settings.artifacts['path'] || File.join(Settings.shared['path'], "artifacts"), Rails.root)
 Settings.artifacts['max_size']   ||= 100 # in megabytes
 
+#
+# Registry
+#
+Settings['registry'] ||= Settingslogic.new({})
+Settings.registry['enabled']       ||= false
+Settings.registry['host']          ||= "example.com"
+Settings.registry['api_url']       ||= "http://localhost:5000/"
+Settings.registry['key']           ||= nil
+Settings.registry['issuer']        ||= nil
+
 #
 # Git LFS
 #

config/routes.rb

@@ -64,6 +64,9 @@ Rails.application.routes.draw do
   get 'search' => 'search#show'
   get 'search/autocomplete' => 'search#autocomplete', as: :search_autocomplete
 
+  # JSON Web Token
+  get 'jwt/auth' => 'jwt#auth'
+
   # API
   API::API.logger Rails.logger
   mount API::API => '/api'

db/migrate/20160407120251_add_images_enabled_for_project.rb

+class AddImagesEnabledForProject < ActiveRecord::Migration
+  def change
+    add_column :projects, :container_registry_enabled, :boolean
+  end
+end

db/migrate/20160508215820_add_type_to_notes.rb

+class AddTypeToNotes < ActiveRecord::Migration
+  def change
+    add_column :notes, :type, :string
+  end
+end

db/migrate/20160508221410_set_type_on_legacy_diff_notes.rb

+class SetTypeOnLegacyDiffNotes < ActiveRecord::Migration
+  def change
+    execute "UPDATE notes SET type = 'LegacyDiffNote' WHERE line_code IS NOT NULL"
+  end
+end

db/migrate/20160516174813_add_send_user_confirmation_email_to_application_settings.rb

+class AddSendUserConfirmationEmailToApplicationSettings < ActiveRecord::Migration
+  def up
+    add_column :application_settings, :send_user_confirmation_email, :boolean, default: false
+
+    #Sets confirmation email to true by default on existing installations.
+    execute "UPDATE application_settings SET send_user_confirmation_email=true"
+  end
+
+  def down
+    remove_column :application_settings, :send_user_confirmation_email
+  end
+end

db/schema.rb

@@ -632,10 +632,11 @@ ActiveRecord::Schema.define(version: 20160509201028) do
     t.string   "line_code"
     t.string   "commit_id"
     t.integer  "noteable_id"
-    t.boolean  "system",        default: false, null: false
+    t.boolean  "system",            default: false, null: false
     t.text     "st_diff"
     t.integer  "updated_by_id"
-    t.boolean  "is_award",      default: false, null: false
+    t.boolean  "is_award",          default: false, null: false
+    t.string   "type"
   end
 
   add_index "notes", ["author_id"], name: "index_notes_on_author_id", using: :btree
@@ -761,6 +762,7 @@ ActiveRecord::Schema.define(version: 20160509201028) do
     t.integer  "pushes_since_gc",              default: 0
     t.boolean  "last_repository_check_failed"
     t.datetime "last_repository_check_at"
+    t.boolean  "container_registry_enabled"
   end
 
   add_index "projects", ["builds_enabled", "shared_runners_enabled"], name: "index_projects_on_builds_enabled_and_shared_runners_enabled", using: :btree

doc/administration/environment_variables.md

@@ -58,4 +58,4 @@ to the naming scheme `GITLAB_#{name in 1_settings.rb in upper case}`.
 
 It's possible to preconfigure the GitLab docker image by adding the environment
 variable `GITLAB_OMNIBUS_CONFIG` to the `docker run` command.
-For more information see the ['preconfigure-docker-container' section in the Omnibus documentation](http://doc.gitlab.com/omnibus/docker/#preconfigure-docker-container).
+For more information see the ['preconfigure-docker-container' section in the Omnibus documentation](http://docs.gitlab.com/omnibus/docker/#preconfigure-docker-container).

doc/administration/high_availability/load_balancer.md

@@ -60,4 +60,4 @@ Read more on high-availability configuration:
       configure custom domains with custom SSL, which would not be possible
       if SSL was terminated at the load balancer.
 
-[gitlab-pages]: http://doc.gitlab.com/ee/pages/administration.html
+[gitlab-pages]: http://docs.gitlab.com/ee/pages/administration.html

doc/administration/high_availability/nfs.md

@@ -113,4 +113,4 @@ Read more on high-availability configuration:
 1. [Configure the GitLab application servers](gitlab.md)
 1. [Configure the load balancers](load_balancer.md)
 
-[udp-log-shipping]: http://doc.gitlab.com/omnibus/settings/logs.html#udp-log-shipping-gitlab-enterprise-edition-only "UDP log shipping"
+[udp-log-shipping]: http://docs.gitlab.com/omnibus/settings/logs.html#udp-log-shipping-gitlab-enterprise-edition-only "UDP log shipping"

doc/api/projects.md

@@ -424,6 +424,7 @@ Parameters:
 - `builds_enabled` (optional)
 - `wiki_enabled` (optional)
 - `snippets_enabled` (optional)
+- `container_registry_enabled` (optional)
 - `public` (optional) - if `true` same as setting visibility_level = 20
 - `visibility_level` (optional)
 - `import_url` (optional)
@@ -447,6 +448,7 @@ Parameters:
 - `builds_enabled` (optional)
 - `wiki_enabled` (optional)
 - `snippets_enabled` (optional)
+- `container_registry_enabled` (optional)
 - `public` (optional) - if `true` same as setting visibility_level = 20
 - `visibility_level` (optional)
 - `import_url` (optional)
@@ -472,6 +474,7 @@ Parameters:
 - `builds_enabled` (optional)
 - `wiki_enabled` (optional)
 - `snippets_enabled` (optional)
+- `container_registry_enabled` (optional)
 - `public` (optional) - if `true` same as setting visibility_level = 20
 - `visibility_level` (optional)
 - `public_builds` (optional)

doc/api/services.md

@@ -491,7 +491,7 @@ Jira issue tracker
 
 Set JIRA service for a project.
 
-> Setting `project_url`, `issues_url` and `new_issue_url` will allow a user to easily navigate to the Jira issue tracker. See the [integration doc](http://doc.gitlab.com/ce/integration/external-issue-tracker.html) for details.  Support for referencing commits and automatic closing of Jira issues directly from GitLab is [available in GitLab EE.](http://doc.gitlab.com/ee/integration/jira.html)
+> Setting `project_url`, `issues_url` and `new_issue_url` will allow a user to easily navigate to the Jira issue tracker. See the [integration doc](http://docs.gitlab.com/ce/integration/external-issue-tracker.html) for details.  Support for referencing commits and automatic closing of Jira issues directly from GitLab is [available in GitLab EE.](http://docs.gitlab.com/ee/integration/jira.html)
 
 ```
 PUT /projects/:id/services/jira

doc/development/doc_styleguide.md

@@ -127,7 +127,7 @@ Inside the document:
     ```
   If the document you are editing resides in a place other than the GitLab CE/EE
   `doc/` directory, instead of the relative link, use the full path:
-  `http://doc.gitlab.com/ce/administration/restart_gitlab.html`.
+  `http://docs.gitlab.com/ce/administration/restart_gitlab.html`.
   Replace `reconfigure` with `restart` where appropriate.
 
 ## Installation guide
@@ -266,5 +266,5 @@ curl -X PUT -H "PRIVATE-TOKEN: 9koXpg98eAheJpvBs5tK" -d "restricted_signup_domai
 
 [cURL]: http://curl.haxx.se/ "cURL website"
 [single spaces]: http://www.slate.com/articles/technology/technology/2011/01/space_invaders.html
-[gfm]: http://doc.gitlab.com/ce/markdown/markdown.html#newlines "GitLab flavored markdown documentation"
+[gfm]: http://docs.gitlab.com/ce/markdown/markdown.html#newlines "GitLab flavored markdown documentation"
 [doc-restart]: ../administration/restart_gitlab.md "GitLab restart documentation"

doc/gitlab-basics/create-issue.md

@@ -24,4 +24,4 @@ You may assign the Issue to a user, add a milestone and add labels (they are all
 
 ![Submit new issue](basicsimages/submit_new_issue.png)
 
-Your Issue will now be added to the Issue Tracker and will be ready to be reviewed. You can comment on it and mention the people involved. You can also link Issues to the Merge Requests where the Issues are solved. To do this, you can use an [Issue closing pattern](http://doc.gitlab.com/ce/customization/issue_closing.html).
+Your Issue will now be added to the Issue Tracker and will be ready to be reviewed. You can comment on it and mention the people involved. You can also link Issues to the Merge Requests where the Issues are solved. To do this, you can use an [Issue closing pattern](http://docs.gitlab.com/ce/customization/issue_closing.html).

doc/gitlab-basics/create-project.md

@@ -14,7 +14,7 @@ Fill out the required information:
 
 1. Select a [visibility level](https://gitlab.com/help/public_access/public_access)
 
-1. You can also [import your existing projects](http://doc.gitlab.com/ce/workflow/importing/README.html)
+1. You can also [import your existing projects](http://docs.gitlab.com/ce/workflow/importing/README.html)
 
 1. Click on "create project"
 

doc/hooks/custom_hooks.md

@@ -2,7 +2,7 @@
 
 **Note: Custom git hooks must be configured on the filesystem of the GitLab
 server. Only GitLab server administrators will be able to complete these tasks.
-Please explore [webhooks](../web_hooks/web_hooks.md) as an option if you do not have filesystem access. For a user configurable Git Hooks interface, please see [GitLab Enterprise Edition Git Hooks](http://doc.gitlab.com/ee/git_hooks/git_hooks.html).**
+Please explore [webhooks](../web_hooks/web_hooks.md) as an option if you do not have filesystem access. For a user configurable Git Hooks interface, please see [GitLab Enterprise Edition Git Hooks](http://docs.gitlab.com/ee/git_hooks/git_hooks.html).**
 
 Git natively supports hooks that are executed on different actions.
 Examples of server-side git hooks include pre-receive, post-receive, and update.

doc/install/installation.md

@@ -6,7 +6,7 @@ Since an installation from source is a lot of work and error prone we strongly r
 
 One reason the Omnibus package is more reliable is its use of Runit to restart any of the GitLab processes in case one crashes.
 On heavily used GitLab instances the memory usage of the Sidekiq background worker will grow over time.
-Omnibus packages solve this by [letting the Sidekiq terminate gracefully](http://doc.gitlab.com/ce/operations/sidekiq_memory_killer.html) if it uses too much memory.
+Omnibus packages solve this by [letting the Sidekiq terminate gracefully](http://docs.gitlab.com/ce/operations/sidekiq_memory_killer.html) if it uses too much memory.
 After this termination Runit will detect Sidekiq is not running and will start it.
 Since installations from source don't have Runit, Sidekiq can't be terminated and its memory usage will grow over time.
 

doc/install/relative_url.md

@@ -132,5 +132,5 @@ To disable the relative URL:
 1.  Follow the same as above starting from 2. and set up the
     GitLab URL to one that doesn't contain a relative path.
 
-[omnibus-rel]: http://doc.gitlab.com/omnibus/settings/configuration.html#configuring-a-relative-url-for-gitlab "How to setup relative URL in Omnibus GitLab"
+[omnibus-rel]: http://docs.gitlab.com/omnibus/settings/configuration.html#configuring-a-relative-url-for-gitlab "How to setup relative URL in Omnibus GitLab"
 [restart gitlab]: ../administration/restart_gitlab.md#installations-from-source "How to restart GitLab"

doc/integration/README.md

@@ -19,7 +19,7 @@ See the documentation below for details on how to configure these services.
 
 GitLab Enterprise Edition contains [advanced Jenkins support][jenkins].
 
-[jenkins]: http://doc.gitlab.com/ee/integration/jenkins.html
+[jenkins]: http://docs.gitlab.com/ee/integration/jenkins.html
 
 
 ## Project services

doc/intro/README.md

@@ -39,4 +39,4 @@ Install and update your GitLab installation.
 
 - [Install GitLab](https://about.gitlab.com/installation/)
 - [Update GitLab](https://about.gitlab.com/update/)
-- [Explore Omnibus GitLab configuration options](http://doc.gitlab.com/omnibus/settings/configuration.html)
+- [Explore Omnibus GitLab configuration options](http://docs.gitlab.com/omnibus/settings/configuration.html)

doc/logs/logs.md

 ## Log system
 GitLab has advanced log system so everything is logging and you can analize your instance using various system log files.
-In addition to system log files, GitLab Enterprise Edition comes with Audit Events. Find more about them [in Audit Events documentation](http://doc.gitlab.com/ee/administration/audit_events.html)
+In addition to system log files, GitLab Enterprise Edition comes with Audit Events. Find more about them [in Audit Events documentation](http://docs.gitlab.com/ee/administration/audit_events.html)
 
 System log files are typically plain text in a standard log file format. This guide talks about how to read and use these system log files.
 

doc/permissions/permissions.md

@@ -27,6 +27,7 @@ documentation](../workflow/add-user/add-user.md).
 | Manage issue tracker                  |         | ✓          | ✓           | ✓        | ✓      |
 | Manage labels                         |         | ✓          | ✓           | ✓        | ✓      |
 | See a commit status                   |         | ✓          | ✓           | ✓        | ✓      |
+| See a container registry              |         | ✓          | ✓           | ✓        | ✓      |
 | Manage merge requests                 |         |            | ✓           | ✓        | ✓      |
 | Create new merge request              |         |            | ✓           | ✓        | ✓      |
 | Create new branches                   |         |            | ✓           | ✓        | ✓      |
@@ -37,6 +38,7 @@ documentation](../workflow/add-user/add-user.md).
 | Write a wiki                          |         |            | ✓           | ✓        | ✓      |
 | Cancel and retry builds               |         |            | ✓           | ✓        | ✓      |
 | Create or update commit status        |         |            | ✓           | ✓        | ✓      |
+| Update a container registry           |         |            | ✓           | ✓        | ✓      |
 | Create new milestones                 |         |            |             | ✓        | ✓      |
 | Add new team members                  |         |            |             | ✓        | ✓      |
 | Push to protected branches            |         |            |             | ✓        | ✓      |

doc/raketasks/README.md

@@ -8,4 +8,4 @@
 - [User management](user_management.md)
 - [Webhooks](web_hooks.md)
 - [Import](import.md) of git repositories in bulk
-- [Rebuild authorized_keys file](http://doc.gitlab.com/ce/raketasks/maintenance.html#rebuild-authorized_keys-file) task for administrators
+- [Rebuild authorized_keys file](http://docs.gitlab.com/ce/raketasks/maintenance.html#rebuild-authorized_keys-file) task for administrators

doc/security/README.md

@@ -8,3 +8,4 @@
 - [User File Uploads](user_file_uploads.md)
 - [How we manage the CRIME vulnerability](crime_vulnerability.md)
 - [Enforce Two-factor authentication](two_factor_authentication.md)
+- [Send email confirmation on sign-up](user_email_confirmation.md)

doc/security/user_email_confirmation.md

+# User email confirmation at sign-up
+
+Gitlab admin can enable email confirmation on sign-up, if you want to confirm all
+user emails before they are able to sign-in.
+
+In the Admin area under **Settings** (`/admin/application_settings`), go to section
+**Sign-in Restrictions** and look for **Send confirmation email on sign-up** option.

doc/update/README.md

@@ -29,7 +29,7 @@ Based on your installation, choose a section below that fits your needs.
 
 ## Omnibus Packages
 
-- The [Omnibus update guide](http://doc.gitlab.com/omnibus/update/README.html)
+- The [Omnibus update guide](http://docs.gitlab.com/omnibus/update/README.html)
   contains the steps needed to update an Omnibus GitLab package.
 
 ## Installation from source
@@ -86,10 +86,10 @@ possible.
   information about configuring GitLab to work with a MySQL database.
 - [Restoring from backup after a failed upgrade](restore_after_failure.md)
 
-[omnidocker]: http://doc.gitlab.com/omnibus/docker/README.html
+[omnidocker]: http://docs.gitlab.com/omnibus/docker/README.html
 [source-ee]: https://gitlab.com/gitlab-org/gitlab-ee/tree/master/doc/update
 [source-ce]: https://gitlab.com/gitlab-org/gitlab-ce/tree/master/doc/update
 [ee-ce]: ../downgrade_ee_to_ce/README.md
 [ce]: https://about.gitlab.com/features/#community
 [ee]: https://about.gitlab.com/features/#enterprise
-[omni-ce-ee]: http://doc.gitlab.com/omnibus/update/README.html#from-community-edition-to-enterprise-edition
+[omni-ce-ee]: http://docs.gitlab.com/omnibus/update/README.html#from-community-edition-to-enterprise-edition

doc/workflow/gitlab_flow.md

@@ -131,7 +131,7 @@ When you feel comfortable with it to be merged you assign it to the person that
 There is room for more feedback and after the assigned person feels comfortable with the result the branch is merged.
 If the assigned person does not feel comfortable they can close the merge request without merging.
 
-In GitLab it is common to protect the long-lived branches (e.g. the master branch) so that normal developers [can't modify these protected branches](http://doc.gitlab.com/ce/permissions/permissions.html).
+In GitLab it is common to protect the long-lived branches (e.g. the master branch) so that normal developers [can't modify these protected branches](http://docs.gitlab.com/ce/permissions/permissions.html).
 So if you want to merge it into a protected branch you assign it to someone with master authorizations.
 
 ## Issues with GitLab flow
@@ -187,7 +187,7 @@ If you have an issue that spans across multiple repositories, the best thing is
 ![Vim screen showing the rebase view](rebase.png)
 
 With git you can use an interactive rebase (`rebase -i`) to squash multiple commits into one and reorder them.
-In GitLab EE and .com you can also [rebase before merge](http://doc.gitlab.com/ee/workflow/rebase_before_merge.html) from the web interface.
+In GitLab EE and .com you can also [rebase before merge](http://docs.gitlab.com/ee/workflow/rebase_before_merge.html) from the web interface.
 This functionality is useful if you made a couple of commits for small changes during development and want to replace them with a single commit or if you want to make the order more logical.
 However you should never rebase commits you have pushed to a remote server.
 Somebody can have referred to the commits or cherry-picked them.

doc/workflow/groups.md

@@ -54,7 +54,7 @@ If necessary, you can increase the access level of an individual user for a spec
 ## Managing group memberships via LDAP
 
 In GitLab Enterprise Edition it is possible to manage GitLab group memberships using LDAP groups.
-See [the GitLab Enterprise Edition documentation](http://doc.gitlab.com/ee/integration/ldap.html) for more information.
+See [the GitLab Enterprise Edition documentation](http://docs.gitlab.com/ee/integration/ldap.html) for more information.
 
 ## Allowing only admins to create groups
 

doc/workflow/importing/import_projects_from_github.md

@@ -44,5 +44,5 @@ case the namespace is taken, the project will be imported on the user's
 namespace.
 
 [gh-import]: ../../integration/github.md "GitHub integration"
-[ee-gh]: http://doc.gitlab.com/ee/integration/github.html "GitHub integration for GitLab EE"
+[ee-gh]: http://docs.gitlab.com/ee/integration/github.html "GitHub integration for GitLab EE"
 [new-project]: ../../gitlab-basics/create-project.md "How to create a new project in GitLab"

doc/workflow/importing/import_projects_from_gitlab_com.md

@@ -2,7 +2,7 @@
 
 You can import your existing GitLab.com projects to your GitLab instance. But keep in mind that it is possible only if
 GitLab support is enabled on your GitLab instance. 
-You can read more about GitLab support [here](http://doc.gitlab.com/ce/integration/gitlab.html)
+You can read more about GitLab support [here](http://docs.gitlab.com/ce/integration/gitlab.html)
 To get to the importer page you need to go to "New project" page.
 
 ![New project page](gitlab_importer/new_project_page.png)

doc/workflow/lfs/manage_large_binaries_with_git_lfs.md

@@ -4,7 +4,7 @@ Managing large files such as audio, video and graphics files has always been one
 of the shortcomings of Git. The general recommendation is to not have Git repositories
 larger than 1GB to preserve performance.
 
-GitLab already supports [managing large files with git annex](http://doc.gitlab.com/ee/workflow/git_annex.html)
+GitLab already supports [managing large files with git annex](http://docs.gitlab.com/ee/workflow/git_annex.html)
 (EE only), however in certain environments it is not always convenient to use
 different commands to differentiate between the large files and regular ones.
 

features/steps/shared/diff_note.rb

@@ -23,7 +23,7 @@ module SharedDiffNote
     page.within(diff_file_selector) do
       click_diff_line(sample_commit.line_code)
 
-      page.within("form[id$='#{sample_commit.line_code}']") do
+      page.within("form[id$='#{sample_commit.line_code}-true']") do
         fill_in "note[note]", with: "Typo, please fix"
         find(".js-comment-button").trigger("click")
         sleep 0.05
@@ -33,7 +33,7 @@ module SharedDiffNote
 
   step 'I leave a diff comment in a parallel view on the left side like "Old comment"' do
     click_parallel_diff_line(sample_commit.line_code, 'old')
-    page.within("#{diff_file_selector} form[id$='#{sample_commit.line_code}']") do
+    page.within("#{diff_file_selector} form[id$='#{sample_commit.line_code}-true']") do
       fill_in "note[note]", with: "Old comment"
       find(".js-comment-button").trigger("click")
     end
@@ -41,7 +41,7 @@ module SharedDiffNote
 
   step 'I leave a diff comment in a parallel view on the right side like "New comment"' do
     click_parallel_diff_line(sample_commit.line_code, 'new')
-    page.within("#{diff_file_selector} form[id$='#{sample_commit.line_code}']") do
+    page.within("#{diff_file_selector} form[id$='#{sample_commit.line_code}-true']") do
       fill_in "note[note]", with: "New comment"
       find(".js-comment-button").trigger("click")
     end
@@ -51,7 +51,7 @@ module SharedDiffNote
     page.within(diff_file_selector) do
       click_diff_line(sample_commit.line_code)
 
-      page.within("form[id$='#{sample_commit.line_code}']") do
+      page.within("form[id$='#{sample_commit.line_code}-true']") do
         fill_in "note[note]", with: "Should fix it :smile:"
         find('.js-md-preview-button').click
       end
@@ -62,7 +62,7 @@ module SharedDiffNote
     page.within(diff_file_selector) do
       click_diff_line(sample_commit.del_line_code)
 
-      page.within("form[id$='#{sample_commit.del_line_code}']") do
+      page.within("form[id$='#{sample_commit.del_line_code}-true']") do
         fill_in "note[note]", with: "DRY this up"
         find('.js-md-preview-button').click
       end
@@ -91,7 +91,7 @@ module SharedDiffNote
     page.within(diff_file_selector) do
       click_diff_line(sample_commit.line_code)
 
-      page.within("form[id$='#{sample_commit.line_code}']") do
+      page.within("form[id$='#{sample_commit.line_code}-true']") do
         fill_in 'note[note]', with: ':smile:'
         click_button('Comment')
       end

lib/api/commits.rb

@@ -107,6 +107,8 @@ module API
 
             break if opts[:line_code]
           end
+
+          opts[:type] = LegacyDiffNote.name if opts[:line_code]
         end
 
         note = ::Notes::CreateService.new(user_project, current_user, opts).execute

lib/api/entities.rb

@@ -66,7 +66,8 @@ module API
       expose :owner, using: Entities::UserBasic, unless: ->(project, options) { project.group }
       expose :name, :name_with_namespace
       expose :path, :path_with_namespace
-      expose :issues_enabled, :merge_requests_enabled, :wiki_enabled, :builds_enabled, :snippets_enabled, :created_at, :last_activity_at
+      expose :issues_enabled, :merge_requests_enabled, :wiki_enabled, :builds_enabled, :snippets_enabled, :container_registry_enabled
+      expose :created_at, :last_activity_at
       expose :shared_runners_enabled
       expose :creator_id
       expose :namespace
@@ -227,9 +228,9 @@ module API
 
     class CommitNote < Grape::Entity
       expose :note
-      expose(:path) { |note| note.diff_file_name }
-      expose(:line) { |note| note.diff_new_line }
-      expose(:line_type) { |note| note.diff_line_type }
+      expose(:path) { |note| note.diff_file_path if note.legacy_diff_note? }
+      expose(:line) { |note| note.diff_new_line if note.legacy_diff_note? }
+      expose(:line_type) { |note| note.diff_line_type if note.legacy_diff_note? }
       expose :author, using: Entities::UserBasic
       expose :created_at
     end

lib/api/projects.rb

@@ -94,6 +94,7 @@ module API
       #   builds_enabled (optional)
       #   wiki_enabled (optional)
       #   snippets_enabled (optional)
+      #   container_registry_enabled (optional)
       #   shared_runners_enabled (optional)
       #   namespace_id (optional) - defaults to user namespace
       #   public (optional) - if true same as setting visibility_level = 20
@@ -112,6 +113,7 @@ module API
                                      :builds_enabled,
                                      :wiki_enabled,
                                      :snippets_enabled,
+                                     :container_registry_enabled,
                                      :shared_runners_enabled,
                                      :namespace_id,
                                      :public,
@@ -143,6 +145,7 @@ module API
       #   builds_enabled (optional)
       #   wiki_enabled (optional)
       #   snippets_enabled (optional)
+      #   container_registry_enabled (optional)
       #   shared_runners_enabled (optional)
       #   public (optional) - if true same as setting visibility_level = 20
       #   visibility_level (optional)
@@ -206,6 +209,7 @@ module API
       #   builds_enabled (optional)
       #   wiki_enabled (optional)
       #   snippets_enabled (optional)
+      #   container_registry_enabled (optional)
       #   shared_runners_enabled (optional)
       #   public (optional) - if true same as setting visibility_level = 20
       #   visibility_level (optional) - visibility level of a project
@@ -222,6 +226,7 @@ module API
                                      :builds_enabled,
                                      :wiki_enabled,
                                      :snippets_enabled,
+                                     :container_registry_enabled,
                                      :shared_runners_enabled,
                                      :public,
                                      :visibility_level,

lib/gitlab/github_import/branch_formatter.rb

+module Gitlab
+  module GithubImport
+    class BranchFormatter < BaseFormatter
+      delegate :repo, :sha, :ref, to: :raw_data
+
+      def exists?
+        project.repository.branch_exists?(ref)
+      end
+
+      def name
+        @name ||= exists? ? ref : "#{ref}-#{short_id}"
+      end
+
+      def valid?
+        repo.present?
+      end
+
+      def valid?
+        repo.present?
+      end
+
+      private
+
+      def short_id
+        sha.to_s[0..7]
+      end
+    end
+  end
+end

lib/gitlab/github_import/importer.rb

@@ -3,12 +3,15 @@ module Gitlab
     class Importer
       include Gitlab::ShellAdapter
 
-      attr_reader :project, :client
+      attr_reader :client, :project, :repo, :repo_url
 
       def initialize(project)
-        @project = project
-        if import_data_credentials
-          @client = Client.new(import_data_credentials[:user])
+        @project  = project
+        @repo     = project.import_source
+        @repo_url = project.import_url
+
+        if credentials
+          @client = Client.new(credentials[:user])
           @formatter = Gitlab::ImportFormatter.new
         else
           raise Projects::ImportService::Error, "Unable to find project import data credentials for project ID: #{@project.id}"
@@ -22,12 +25,12 @@ module Gitlab
 
       private
 
-      def import_data_credentials
-        @import_data_credentials ||= project.import_data.credentials if project.import_data
+      def credentials
+        @credentials ||= project.import_data.credentials if project.import_data
       end
 
       def import_labels
-        client.labels(project.import_source).each do |raw_data|
+        client.labels(repo).each do |raw_data|
           Label.create!(LabelFormatter.new(project, raw_data).attributes)
         end
 
@@ -37,7 +40,7 @@ module Gitlab
       end
 
       def import_milestones
-        client.list_milestones(project.import_source, state: :all).each do |raw_data|
+        client.list_milestones(repo, state: :all).each do |raw_data|
           Milestone.create!(MilestoneFormatter.new(project, raw_data).attributes)
         end
 
@@ -47,9 +50,7 @@ module Gitlab
       end
 
       def import_issues
-        client.list_issues(project.import_source, state: :all,
-                                                  sort: :created,
-                                                  direction: :asc).each do |raw_data|
+        client.list_issues(repo, state: :all, sort: :created, direction: :asc).each do |raw_data|
           gh_issue = IssueFormatter.new(project, raw_data)
 
           if gh_issue.valid?
@@ -68,29 +69,50 @@ module Gitlab
       end
 
       def import_pull_requests
-        client.pull_requests(project.import_source, state: :all,
-                                                    sort: :created,
-                                                    direction: :asc).each do |raw_data|
-          pull_request = PullRequestFormatter.new(project, raw_data)
-
-          if pull_request.valid?
-            merge_request = MergeRequest.new(pull_request.attributes)
-
-            if merge_request.save
-              apply_labels(pull_request.number, merge_request)
-              import_comments(pull_request.number, merge_request)
-              import_comments_on_diff(pull_request.number, merge_request)
-            end
+        pull_requests = client.pull_requests(repo, state: :all, sort: :created, direction: :asc)
+                              .map { |raw| PullRequestFormatter.new(project, raw) }
+                              .select(&:valid?)
+
+        source_branches_removed = pull_requests.reject(&:source_branch_exists?).map { |pr| [pr.source_branch_name, pr.source_branch_sha] }
+        target_branches_removed = pull_requests.reject(&:target_branch_exists?).map { |pr| [pr.target_branch_name, pr.target_branch_sha] }
+        branches_removed = source_branches_removed | target_branches_removed
+
+        create_refs(branches_removed)
+
+        pull_requests.each do |pull_request|
+          merge_request = MergeRequest.new(pull_request.attributes)
+
+          if merge_request.save
+            apply_labels(pull_request.number, merge_request)
+            import_comments(pull_request.number, merge_request)
+            import_comments_on_diff(pull_request.number, merge_request)
           end
         end
 
+        delete_refs(branches_removed)
+
         true
       rescue ActiveRecord::RecordInvalid => e
         raise Projects::ImportService::Error, e.message
       end
 
+      def create_refs(branches)
+        branches.each do |name, sha|
+          client.create_ref(repo, "refs/heads/#{name}", sha)
+        end
+
+        project.repository.fetch_ref(repo_url, '+refs/heads/*', 'refs/heads/*')
+      end
+
+      def delete_refs(branches)
+        branches.each do |name, _|
+          client.delete_ref(repo, "heads/#{name}")
+          project.repository.rm_branch(project.creator, name)
+        end
+      end
+
       def apply_labels(number, issuable)
-        issue = client.issue(project.import_source, number)
+        issue = client.issue(repo, number)
 
         if issue.labels.count > 0
           label_ids = issue.labels.map do |raw|
@@ -102,12 +124,12 @@ module Gitlab
       end
 
       def import_comments(issue_number, noteable)
-        comments = client.issue_comments(project.import_source, issue_number)
+        comments = client.issue_comments(repo, issue_number)
         create_comments(comments, noteable)
       end
 
       def import_comments_on_diff(pull_request_number, merge_request)
-        comments = client.pull_request_comments(project.import_source, pull_request_number)
+        comments = client.pull_request_comments(repo, pull_request_number)
         create_comments(comments, merge_request)
       end
 

lib/gitlab/github_import/pull_request_formatter.rb

 module Gitlab
   module GithubImport
     class PullRequestFormatter < BaseFormatter
+      delegate :exists?, :name, :project, :repo, :sha, to: :source_branch, prefix: true
+      delegate :exists?, :name, :project, :repo, :sha, to: :target_branch, prefix: true
+
       def attributes
         {
           iid: number,
           title: raw_data.title,
           description: description,
-          source_project: source_project,
-          source_branch: source_branch.name,
-          target_project: target_project,
-          target_branch: target_branch.name,
+          source_project: source_branch_project,
+          source_branch: source_branch_name,
+          head_source_sha: source_branch_sha,
+          target_project: target_branch_project,
+          target_branch: target_branch_name,
+          base_target_sha: target_branch_sha,
           state: state,
           milestone: milestone,
           author_id: author_id,
@@ -24,7 +29,15 @@ module Gitlab
       end
 
       def valid?
-        !cross_project? && source_branch.present? && target_branch.present?
+        source_branch.valid? && target_branch.valid? && !cross_project?
+      end
+
+      def source_branch
+        @source_branch ||= BranchFormatter.new(project, raw_data.head)
+      end
+
+      def target_branch
+        @target_branch ||= BranchFormatter.new(project, raw_data.base)
       end
 
       private
@@ -52,7 +65,7 @@ module Gitlab
       end
 
       def cross_project?
-        source_repo.present? && target_repo.present? && source_repo.id != target_repo.id
+        source_branch_repo.id != target_branch_repo.id
       end
 
       def description
@@ -65,30 +78,6 @@ module Gitlab
         end
       end
 
-      def source_project
-        project
-      end
-
-      def source_repo
-        raw_data.head.repo
-      end
-
-      def source_branch
-        source_project.repository.find_branch(raw_data.head.ref)
-      end
-
-      def target_project
-        project
-      end
-
-      def target_repo
-        raw_data.base.repo
-      end
-
-      def target_branch
-        target_project.repository.find_branch(raw_data.base.ref)
-      end
-
       def state
         @state ||= case true
                    when raw_data.state == 'closed' && raw_data.merged_at.present?

lib/gitlab/metrics/subscribers/rails_cache.rb

@@ -6,26 +6,28 @@ module Gitlab
         attach_to :active_support
 
         def cache_read(event)
-          increment(:cache_read_duration, event.duration)
+          increment(:cache_read, event.duration)
         end
 
         def cache_write(event)
-          increment(:cache_write_duration, event.duration)
+          increment(:cache_write, event.duration)
         end
 
         def cache_delete(event)
-          increment(:cache_delete_duration, event.duration)
+          increment(:cache_delete, event.duration)
         end
 
         def cache_exist?(event)
-          increment(:cache_exists_duration, event.duration)
+          increment(:cache_exists, event.duration)
         end
 
         def increment(key, duration)
           return unless current_transaction
 
           current_transaction.increment(:cache_duration, duration)
-          current_transaction.increment(key, duration)
+          current_transaction.increment(:cache_count, 1)
+          current_transaction.increment("#{key}_duration".to_sym, duration)
+          current_transaction.increment("#{key}_count".to_sym, 1)
         end
 
         private

lib/gitlab/url_builder.rb

@@ -62,7 +62,7 @@ module Gitlab
     end
 
     def wiki_page_url
-      "#{Gitlab.config.gitlab.url}#{object.wiki.wiki_base_path}/#{object.slug}"
+      namespace_project_wiki_url(object.wiki.project.namespace, object.wiki.project, object.slug)
     end
   end
 end

lib/json_web_token/rsa_token.rb

+module JSONWebToken
+  class RSAToken < Token
+    attr_reader :key_file
+
+    def initialize(key_file)
+      super()
+      @key_file = key_file
+    end
+
+    def encoded
+      headers = {
+        kid: kid
+      }
+      JWT.encode(payload, key, 'RS256', headers)
+    end
+
+    private
+
+    def key_data
+      @key_data ||= File.read(key_file)
+    end
+
+    def key
+      @key ||= OpenSSL::PKey::RSA.new(key_data)
+    end
+
+    def public_key
+      key.public_key
+    end
+
+    def kid
+      # calculate sha256 from DER encoded ASN1
+      kid = Digest::SHA256.digest(public_key.to_der)
+
+      # we encode only 30 bytes with base32
+      kid = Base32.encode(kid[0..29])
+
+      # insert colon every 4 characters
+      kid.scan(/.{4}/).join(':')
+    end
+  end
+end

lib/json_web_token/token.rb

+module JSONWebToken
+  class Token
+    attr_accessor :issuer, :subject, :audience, :id
+    attr_accessor :issued_at, :not_before, :expire_time
+
+    def initialize
+      @id = SecureRandom.uuid
+      @issued_at = Time.now
+      # we give a few seconds for time shift
+      @not_before = issued_at - 5.seconds
+      # default 60 seconds should be more than enough for this authentication token
+      @expire_time = issued_at + 1.minute
+      @custom_payload = {}
+    end
+
+    def [](key)
+      @custom_payload[key]
+    end
+
+    def []=(key, value)
+      @custom_payload[key] = value
+    end
+
+    def encoded
+      raise NotImplementedError
+    end
+
+    def payload
+      @custom_payload.merge(default_payload)
+    end
+
+    private
+
+    def default_payload
+      {
+        jti: id,
+        aud: audience,
+        sub: subject,
+        iss: issuer,
+        iat: issued_at.to_i,
+        nbf: not_before.to_i,
+        exp: expire_time.to_i
+      }.compact
+    end
+  end
+end

public/robots.txt

@@ -65,3 +65,4 @@ Disallow: /*/*/deploy_keys
 Disallow: /*/*/hooks
 Disallow: /*/*/services
 Disallow: /*/*/protected_branches
+Disallow: /*/*/uploads/

spec/controllers/admin/users_controller_spec.rb

@@ -114,6 +114,82 @@ describe Admin::UsersController do
     end
   end
 
+  describe 'POST update' do
+    context 'when the password has changed' do
+      def update_password(user, password, password_confirmation = nil)
+        params = {
+          id: user.to_param,
+          user: {
+            password: password,
+            password_confirmation: password_confirmation || password
+          }
+        }
+
+        post :update, params
+      end
+
+      context 'when the new password is valid' do
+        it 'redirects to the user' do
+          update_password(user, 'AValidPassword1')
+
+          expect(response).to redirect_to(admin_user_path(user))
+        end
+
+        it 'updates the password' do
+          update_password(user, 'AValidPassword1')
+
+          expect { user.reload }.to change { user.encrypted_password }
+        end
+
+        it 'sets the new password to expire immediately' do
+          update_password(user, 'AValidPassword1')
+
+          expect { user.reload }.to change { user.password_expires_at }.to(a_value <= Time.now)
+        end
+      end
+
+      context 'when the new password is invalid' do
+        it 'shows the edit page again' do
+          update_password(user, 'invalid')
+
+          expect(response).to render_template(:edit)
+        end
+
+        it 'returns the error message' do
+          update_password(user, 'invalid')
+
+          expect(assigns[:user].errors).to contain_exactly(a_string_matching(/too short/))
+        end
+
+        it 'does not update the password' do
+          update_password(user, 'invalid')
+
+          expect { user.reload }.not_to change { user.encrypted_password }
+        end
+      end
+
+      context 'when the new password does not match the password confirmation' do
+        it 'shows the edit page again' do
+          update_password(user, 'AValidPassword1', 'AValidPassword2')
+
+          expect(response).to render_template(:edit)
+        end
+
+        it 'returns the error message' do
+          update_password(user, 'AValidPassword1', 'AValidPassword2')
+
+          expect(assigns[:user].errors).to contain_exactly(a_string_matching(/doesn't match/))
+        end
+
+        it 'does not update the password' do
+          update_password(user, 'AValidPassword1', 'AValidPassword2')
+
+          expect { user.reload }.not_to change { user.encrypted_password }
+        end
+      end
+    end
+  end
+
   describe "POST impersonate" do
     context "when the user is blocked" do
       before do

spec/controllers/registrations_controller_spec.rb

+require 'spec_helper'
+
+describe RegistrationsController do
+  describe '#create' do
+    around(:each) do |example|
+      perform_enqueued_jobs do
+        example.run
+      end
+    end
+
+    let(:user_params) { { user: { name: "new_user", username: "new_username", email: "new@user.com", password: "Any_password" } } }
+
+    context 'when sending email confirmation' do
+      before { allow(current_application_settings).to receive(:send_user_confirmation_email).and_return(false) }
+
+      it 'logs user in directly' do
+        post(:create, user_params)
+        expect(ActionMailer::Base.deliveries.last).to be_nil
+        expect(subject.current_user).to_not be_nil
+      end
+    end
+
+    context 'when not sending email confirmation' do
+      before { allow(current_application_settings).to receive(:send_user_confirmation_email).and_return(true) }
+
+      it 'does not authenticate user and sends confirmation email' do
+        post(:create, user_params)
+        expect(ActionMailer::Base.deliveries.last.to.first).to eq(user_params[:user][:email])
+        expect(subject.current_user).to be_nil
+      end
+    end
+  end
+end

spec/factories/notes.rb

@@ -9,10 +9,10 @@ FactoryGirl.define do
     author
 
     factory :note_on_commit,             traits: [:on_commit]
-    factory :note_on_commit_diff,        traits: [:on_commit, :on_diff]
+    factory :note_on_commit_diff,        traits: [:on_commit, :on_diff], class: LegacyDiffNote
     factory :note_on_issue,              traits: [:on_issue], aliases: [:votable_note]
     factory :note_on_merge_request,      traits: [:on_merge_request]
-    factory :note_on_merge_request_diff, traits: [:on_merge_request, :on_diff]
+    factory :note_on_merge_request_diff, traits: [:on_merge_request, :on_diff], class: LegacyDiffNote
     factory :note_on_project_snippet,    traits: [:on_project_snippet]
     factory :system_note,                traits: [:system]
     factory :downvote_note,              traits: [:award, :downvote]