Resolve "Clean up CSS for project alerts and flash notifications."

## What does this MR do?

Cleans up CSS and html for alert stripes at the top of project pages.

## Screenshots

#### Before:

![Screen_Shot_2016-12-16_at_2.39.01_PM_copy](/uploads/6a700cf1e41557c00cdaef40f6a2a5b2/Screen_Shot_2016-12-16_at_2.39.01_PM_copy.png)

#### After:

![Screen_Shot_2016-12-16_at_2.39.23_PM_copy](/uploads/c849578becc3a634e8b15ab5340d86a2/Screen_Shot_2016-12-16_at_2.39.23_PM_copy.png)

## Are there points in the code the reviewer needs to double check?

In order to get multiple alerts to appear manually while testing, I simply added the following block to [app/views/shared/_no_password.html.haml](app/views/shared/_no_password.html.haml):

```

.no-password-message.alert.alert-warning.hidden-xs
  You won't be able to pull or push project code via #{gitlab_config.protocol.upcase} until you #{link_to 'set a password', edit_profile_password_path} on your account

  .pull-right
    = link_to "Don't show again", profile_path(user: {hide_no_password: true}), method: :put
    |
    = link_to 'Remind later', '#', class: 'hide-no-password-message'

.no-password-message.alert.alert-warning.hidden-xs
  You won't be able to pull or push project code via #{gitlab_config.protocol.upcase} until you #{link_to 'set a password', edit_profile_password_path} on your account

  .pull-right
    = link_to "Don't show again", profile_path(user: {hide_no_password: true}), method: :put
    |
    = link_to 'Remind later', '#', class: 'hide-no-password-message'

.no-password-message.alert.alert-warning.hidden-xs
  You won't be able to pull or push project code via #{gitlab_config.protocol.upcase} until you #{link_to 'set a password', edit_profile_password_path} on your account

  .pull-right
    = link_to "Don't show again", profile_path(user: {hide_no_password: true}), method: :put
    |
    = link_to 'Remind later', '#', class: 'hide-no-password-message'
```


## Why was this MR needed?

More alert-warning stripes are coming via the CI usage limits implementation in EE (https://gitlab.com/gitlab-org/gitlab-ee/merge_requests/965), and these layout margins and colors were becoming messy.

## Does this MR meet the acceptance criteria?

- [x] [Changelog entry](https://docs.gitlab.com/ce/development/changelog.html) added
- [ ] ~~[Documentation created/updated](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/doc/development/doc_styleguide.md)~~
- [ ] ~~API support added~~
- Tests
  - [ ] ~~Added for this feature/bug~~
  - [x] All builds are passing
- [x] Conform by the [merge request performance guides](http://docs.gitlab.com/ce/development/merge_request_performance_guidelines.html)
- [x] Conform by the [style guides](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/CONTRIBUTING.md#style-guides)
- [x] Branch has no merge conflicts with `master` (if it does - rebase it please)
- [x] [Squashed related commits together](https://git-scm.com/book/en/Git-Tools-Rewriting-History#Squashing-Commits)

## What are the relevant issue numbers?

Closes #25743

See merge request !8151

Make autocomplete request performant

## What does this MR do?

Restricts the `autocomplete_sources`action to returning the `json`of one specific `at` type at a time.

Makes sure all commands start by immediately showing the `loading` dropdown.

If the `loading` dropdown is active, we will request and load in the data for that specific `at` type. We manually trigger the filter again. This time, if `loading` dropdown is not active, initiate default filter behaviour and use the correct data template.

Also fixes an issue where `setup` was called multiple times by only setting up and destroying atwho on a focused/blured input.

## Are there points in the code the reviewer needs to double check?

## Why was this MR needed?

`autocomplete_sources` was requested on page load and is large.

## Screenshots (if relevant)

3 requests for 3 different first-time references.

![Screen_Shot_2016-10-14_at_14.43.12](/uploads/0b04eab0d0bf3638d6d6e431036b8089/Screen_Shot_2016-10-14_at_14.43.12.png)

## Does this MR meet the acceptance criteria?

- [x] [CHANGELOG](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/CHANGELOG) entry added
- [ ] [Documentation created/updated](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/doc/development/doc_styleguide.md)
- [ ] API support added
- Tests
  - [x] Added for this feature/bug
  - [x] All builds are passing
- [x] Conform by the [merge request performance guides](http://docs.gitlab.com/ce/development/merge_request_performance_guidelines.html)
- [x] Conform by the [style guides](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/CONTRIBUTING.md#style-guides)
- [x] Branch has no merge conflicts with `master` (if it does - rebase it please)
- [x] [Squashed related commits together](https://git-scm.com/book/en/Git-Tools-Rewriting-History#Squashing-Commits)

## What are the relevant issue numbers?

Closes #22802

Closes #18435

See merge request !6856

Additional rounded label fixes

## What does this MR do?

fixes some UI bugs for the change to rounded labels

## Are there points in the code the reviewer needs to double check?
-

## Why was this MR needed? / Screenshots (if relevant)

before:
![image](/uploads/ce359bb021fee324156f050b3f848c2e/image.png)

after:
![image](/uploads/a5f0d536db3efdce4ff994deb0d73081/image.png)
these now have full rounded border-radius as well :)
![image](/uploads/d331eae2c32dd043766b4148f9ad88e9/image.png)

## Does this MR meet the acceptance criteria?

- [x] [Changelog entry](https://docs.gitlab.com/ce/development/changelog.html) added
- [ ] [Documentation created/updated](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/doc/development/doc_styleguide.md)
- [ ] API support added
- Tests
  - [ ] Added for this feature/bug
  - [ ] All builds are passing
- [ ] Conform by the [merge request performance guides](http://docs.gitlab.com/ce/development/merge_request_performance_guidelines.html)
- [ ] Conform by the [style guides](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/CONTRIBUTING.md#style-guides)
- [ ] Branch has no merge conflicts with `master` (if it does - rebase it please)
- [ ] [Squashed related commits together](https://git-scm.com/book/en/Git-Tools-Rewriting-History#Squashing-Commits)

## What are the relevant issue numbers?

-

See merge request !8136

Put back bootstrap wells

I removed bootstrap wells previously but we still need them for now. Will return to this later

See merge request !8150

Prevent enviroment table to overflow when name has underscores

## What does this MR do?
Improves columns width
Prevents columns content to overflow to other columns

## Screenshots 
![Screen_Shot_2016-12-16_at_12.27.14](/uploads/69332e43087bf2bf3a546934700a6b31/Screen_Shot_2016-12-16_at_12.27.14.png)

## Does this MR meet the acceptance criteria?

- [ ] [Changelog entry](https://docs.gitlab.com/ce/development/changelog.html) added
- [ ] [Documentation created/updated](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/doc/development/doc_styleguide.md)
- [ ] API support added
- Tests
  - [ ] Added for this feature/bug
  - [ ] All builds are passing
- [x] Conform by the [merge request performance guides](http://docs.gitlab.com/ce/development/merge_request_performance_guidelines.html)
- [x] Conform by the [style guides](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/CONTRIBUTING.md#style-guides)
- [x] Branch has no merge conflicts with `master` (if it does - rebase it please)
- [ ] [Squashed related commits together](https://git-scm.com/book/en/Git-Tools-Rewriting-History#Squashing-Commits)

## What are the relevant issue numbers?
Closes #25207

See merge request !8142

Pass variables from deployment project services to CI runner

## What does this MR do?

This commit introduces the concept of deployment variables - variables
that are collected from deployment services and passed to CI runner
during a deployment build.
Deployment services specify the variables by overriding
"predefined_variables" method.

This commit also configures variables for KubernetesService

## Why was this MR needed?

We need these values for https://gitlab.com/gitlab-org/gitlab-ce/issues/23580

## Does this MR meet the acceptance criteria?

- [x] [Changelog entry](https://docs.gitlab.com/ce/development/changelog.html) added
- [x] [Documentation created/updated](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/doc/development/doc_styleguide.md)
- ~~[ ] API support added~~
- Tests
  - [x] Added for this feature/bug
  - [ ] All builds are passing
- [x] Conform by the [merge request performance guides](http://docs.gitlab.com/ce/development/merge_request_performance_guidelines.html)
- [x] Conform by the [style guides](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/CONTRIBUTING.md#style-guides)
- [x] Branch has no merge conflicts with `master` (if it does - rebase it please)
- [x] [Squashed related commits together](https://git-scm.com/book/en/Git-Tools-Rewriting-History#Squashing-Commits)

## What are the relevant issue numbers?

Refers to https://gitlab.com/gitlab-org/gitlab-ce/issues/23580

See merge request !8107

Resolve "Add a doorkeeper scope suitable for authentication"

## What does this MR do?

- Add a single new scope (in addition to the `api` scope we've had) - `read_user`
- Allow creating OAuth applications and Personal access tokens with a scope selected
- Enforce scopes in the API

## What are the relevant issue numbers?

- Closes #20492 
- EE counterpart for this MR: gitlab-org/gitlab-ee!946

See merge request !5951

Resolve "Manual actions on pipeline graph"

## What does this MR do?
Improves the pipeline graph:
- add actions to each node
- always show the status icon
- improves style
- adds new icons to use only on the pipeline graph
- fixes tooltip body
- adds partial to render the graph node

### Hover state:
@dimitrieh 

This MR does not implements 100% of the mockups - https://gitlab-org.gitlab.io/gitlab-design/progress/dimitrie/pipelines-graphic/22604-spec-previews/#artboard0

As you can see in the mockups, each node has 2 separate hover states, one for the all content and one for the action icon.
In order to not hover the all content when we hover the action icon we would need to refactor the all HTML & CSS of all the pipeline graph, lines included.
The hover problem can be seen in the following video.
[video](https://drive.google.com/file/d/0B2xW80W4hUf0cnJoS1RGQ2hWZlU/view)

As you can see in the video, the build node is hovered even when the mouse seems to be far from the element.

It does not seem wise to me to change the HTML & CSS now for two reasons:
- we would need to rewrite almost everything;
- we will probably rewrite everything when we move this to vue.

Given the latter point, and considering it will be a bug effort to make the hover states equal to the mockups, I suggest we do that when we rewrite the all view.
This is fixable, though, but requires some effort & time.

I can, although, be missing something. @annabeldunstone do you see any quick/easy fix here?


## Screenshots (if relevant)
[video](https://drive.google.com/file/d/0B2xW80W4hUf0OFhZaXlKTW5mS3c/view?usp=sharing)

![Screen_Shot_2016-12-12_at_12.38.25](/uploads/8f015b0d476c832912e1530208f3d70d/Screen_Shot_2016-12-12_at_12.38.25.png)
![Screen_Shot_2016-12-12_at_12.38.31](/uploads/51de435f1120142d9683f06854d66507/Screen_Shot_2016-12-12_at_12.38.31.png)
![Screen_Shot_2016-12-12_at_12.38.39](/uploads/642e7348bcf46a03d13d8eac1cb7ce6b/Screen_Shot_2016-12-12_at_12.38.39.png)
![Screen_Shot_2016-12-12_at_12.40.00](/uploads/781743893bc14cf05f4b8f258e2b58ba/Screen_Shot_2016-12-12_at_12.40.00.png)


Tooltip before
![Screen_Shot_2016-12-06_at_11.29.54](/uploads/b16c0434981a89fb68c4c053c2f1d6e6/Screen_Shot_2016-12-06_at_11.29.54.png)
Tooltip after
![Screen_Shot_2016-12-06_at_11.56.03](/uploads/e5e0ede0f3f8a5434e98373ab8a72500/Screen_Shot_2016-12-06_at_11.56.03.png)


## Does this MR meet the acceptance criteria?
- [x] [Changelog entry](https://docs.gitlab.com/ce/development/changelog.html) added
- [ ] [Documentation created/updated](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/doc/development/doc_styleguide.md)
- [ ] API support added
- Tests
  - [x] Added for this feature/bug
  - [ ] All builds are passing
- [x] Conform by the [merge request performance guides](http://docs.gitlab.com/ce/development/merge_request_performance_guidelines.html)
- [x] Conform by the [style guides](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/CONTRIBUTING.md#style-guides)
- [x] Branch has no merge conflicts with `master` (if it does - rebase it please)
- [x] [Squashed related commits together](https://git-scm.com/book/en/Git-Tools-Rewriting-History#Squashing-Commits)

## What are the relevant issue numbers?
Closes #22604


See merge request !7931

Ensure issuable state changes only fire webhooks once

Webhooks were fired twice when issuables were reopened or closed. Once for the status change and once for the `update` operation

Closes #25339

See merge request !8101

Shorten line length of issues and mrs

Limits container width on issue and mr pages. Shortens line length to human readable length.

![Screen_Shot_2016-12-02_at_12.48.08_PM](https://gitlab.com/gitlab-org/gitlab-ce/uploads/740647c0fd6ea4f0f0aef62155992afe/Screen_Shot_2016-12-05_at_12.54.12_PM.png)

Closes #20916 
Closes #24408

See merge request !7858

Add GitLab host to 2FA QR and manual info

Closes https://gitlab.com/gitlab-org/gitlab-ce/issues/25545

See merge request !6941

Added KaTeX license and procedure to build it for Gitlab

## What does this MR do?
Adds KaTeX license and the procedure for building KaTeX for gitlab. 

## Are there points in the code the reviewer needs to double check?
Nope.

## Why was this MR needed?
Requested by @stanhu

## Screenshots (if relevant)
Not relevant. 

## Does this MR meet the acceptance criteria?

- [X] [Changelog entry](https://docs.gitlab.com/ce/development/changelog.html) added
- [X] [Documentation created/updated](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/doc/development/doc_styleguide.md)
- [X] API support added
- Tests
  - [X] Added for this feature/bug
  - [X] All builds are passing
- [X] Conform by the [merge request performance guides](http://docs.gitlab.com/ce/development/merge_request_performance_guidelines.html)
- [X] Conform by the [style guides](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/CONTRIBUTING.md#style-guides)
- [X] Branch has no merge conflicts with `master` (if it does - rebase it please)
- [X] [Squashed related commits together](https://git-scm.com/book/en/Git-Tools-Rewriting-History#Squashing-Commits)

## What are the relevant issue numbers?

See merge request !8132

The two factor authentication account string only had the user's
email address. This led to ambiguous entries in two factor
code generating apps. This adds the GitLab host to the account
string in the standard format (according to Google). No matter
the code generator this change disambiguates the entry.

Mattermost Notifications Service

## What does this MR do?
closes #22269 

## Screenshots 

![mattermost](/uploads/de71c121f544a91305b6dfa6dc4c5738/mattermost.png)  
![slack](/uploads/081d75d49239319d94332abda214fb98/slack.png)

## Does this MR meet the acceptance criteria?

- [x] [Changelog entry](https://docs.gitlab.com/ce/development/changelog.html) added
- [x] [Documentation created/updated](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/doc/development/doc_styleguide.md)
- [x] API support added
- Tests
  - [x] Added for this feature/bug
  - [x] All builds are passing
- [x] Conform by the [merge request performance guides](http://docs.gitlab.com/ce/development/merge_request_performance_guidelines.html)
- [x] Conform by the [style guides](https://gitlab.com/gitlab-org/gitlab-ce/blob/master/CONTRIBUTING.md#style-guides)
- [x] Branch has no merge conflicts with `master` (if it does - rebase it please)
- [x] [Squashed related commits together](https://git-scm.com/book/en/Git-Tools-Rewriting-History#Squashing-Commits)


See merge request !7764

Fix 8.15 RC1 requires quite amount of downtime

See https://gitlab.com/gitlab-org/gitlab-ce/issues/25635

See merge request !8106

Fix error in linter

Add changelog entry

Update grape to 0.18.0

## What does this MR do?

Update grape to 0.18.0. Required for the settings API.

## What are the relevant issue numbers?

#22928

See merge request !8057

Fix specs in Ruby 2.1

Ruby 2.1 requires a basename argument to `Tempfile.open`, so just call
it something that makes sense in context for the spec.

See merge request !8138

Replace static fixture for abuse_reports_spec

## What does this MR do?

Replace static HAML fixture for `abuse_reports_spec` by dynamically created one.

## What are the relevant issue numbers?

#24753

See merge request !7644

This commit introduces the concept of deployment variables - variables
that are collected from deployment services and passed to CI runner
during a deployment build.
Deployment services specify the variables by overriding
"predefined_variables" method.

This commit also configures variables for KubernetesService

Add missing group policy spec

See merge request !8122

Made Ci::Builds to have same ref as Ci::Pipeline in dev fixtures

See merge request !8110

Update custom hooks docs and set 4.1.0

See merge request !8040