Commit 66e6f6cd authored by Marco Mariani's avatar Marco Mariani

libatlas, libblas components; added scikit-learn+scipy to erp5

parent 340bda8e
[buildout]
parts =
libatlas
[skip-throttle-check.patch]
recipe = hexagonit.recipe.download
md5sum = 17c8471d67c99fac80ace05273ce0817
url = ${:_profile_base_location_}/${:filename}
filename = ${:_buildout_section_name_}
download-only = true
[atlas-download]
recipe = hexagonit.recipe.download
version = 3.10.1
filename = atlas${:version}.tar.bz2
url = http://downloads.sourceforge.net/project/math-atlas/Stable/${:version}/${:filename}
md5sum = 78753e869231cc1417a92eebaa076718
download-only = true
mode = 0644
location = ${buildout:parts-directory}/${:_buildout_section_name_}
[lapack-download]
recipe = hexagonit.recipe.download
version = 3.5.0
filename = lapack-${:version}.tgz
url = http://www.netlib.org/lapack/${:filename}
md5sum = b1d3e3e425b2e44a06760ff173104bdf
download-only = true
mode = 0644
location = ${buildout:parts-directory}/${:_buildout_section_name_}
[libatlas]
recipe = cp.recipe.cmd
location = ${buildout:parts-directory}/${:_buildout_section_name_}
lapack_version = 3.5.0
install_cmd =
set -e
mkdir -p ${:location}__compile__
cd ${:location}__compile__
export SRCdir=`pwd`/ATLAS
export BLDdir=`pwd`/build
tar xfj ${atlas-download:location}/${atlas-download:filename}
cd $SRCdir
# http://stackoverflow.com/questions/14592401/atlas-install-really-need-to-get-past-cpu-throttle-check
# http://sourceforge.net/p/math-atlas/support-requests/886/
patch -p1 <${skip-throttle-check.patch:location}/${skip-throttle-check.patch:filename}
mkdir -p $BLDdir
cd $BLDdir
export F77LIB=${gcc-fortran:location}/lib64/libgfortran.so.3
export LD_PRELOAD=$F77LIB
$SRCdir/configure -b 64 \
--prefix=${:location} \
--with-netlib-lapack-tarfile=${lapack-download:location}/${lapack-download:filename} \
-C acg ${gcc-fortran:location}/bin/gcc \
-C if ${gcc-fortran:location}/bin/gfortran \
--shared
#-Ss f77lib `${gcc-fortran:location}/bin/gfortran --print-file-name=libgfortran.so` \
make build # tune & build lib
make check # sanity check correct answer
# make ptcheck # sanity check parallel
make time # check if lib is fast
make install # copy libs to install dir
diff --git a/CONFIG/src/probe_arch.c b/CONFIG/src/probe_arch.c
index 75edef9..f440bf6 100644
--- a/CONFIG/src/probe_arch.c
+++ b/CONFIG/src/probe_arch.c
@@ -238,8 +238,7 @@ int main(int nargs, char **args)
printf("CPU MHZ=%d\n",
ProbeOneInt(OS, asmd, targ, "-m", "CPU MHZ=", &sure));
if (flags & Pthrottle)
- printf("CPU THROTTLE=%d\n",
- ProbeOneInt(OS, asmd, targ, "-t", "CPU THROTTLE=", &sure));
+ printf("CPU THROTTLE=0\n");
if (flags & P64)
{
if (asmd == gas_x86_64)
[buildout]
parts =
libblas
[libblas]
recipe = cp.recipe.cmd
location = ${buildout:parts-directory}/${:_buildout_section_name_}
gfortran=${gcc-fortran:location}/bin/gfortran
gcc=${gcc-fortran:location}/bin/gcc
install_cmd =
set -e
mkdir -p ${:location}__compile__
cd ${:location}__compile__
wget -nc http://www.netlib.org/blas/blas.tgz
tar xzf blas.tgz
cd BLAS
${:gfortran} -O3 -std=legacy -m64 -fno-second-underscore -fPIC -c *.f
ar r libfblas.a *.o
ranlib libfblas.a
${:gcc} -shared -Wl,-soname,libf77blas.so.3 -o libf77blas.so.3.0.0 *.o -lc
# rm -rf *.o
mkdir -p ${:location}
mv libfblas.a ${:location}/
cp libf77blas.so.3.0.0 ${:location}/
cd ${:location}
ln -sf libf77blas.so.3.0.0 libf77blas.so.3.0
ln -sf libf77blas.so.3.0 libf77blas.so.3
[buildout]
extends =
../git/buildout.cfg
../gcc/buildout.cfg
../libatlas/buildout.cfg
../libblas/buildout.cfg
[scipy-repository.git]
recipe = slapos.recipe.build:gitclone
repository = https://github.com/mmariani/scipy.git
# bumped version number to ensure we're using the freshly compiled egg
branch = 0.13.3001
git-executable = ${git:location}/bin/git
[scikit-learn-repository.git]
recipe = slapos.recipe.build:gitclone
repository = https://github.com/scikit-learn/scikit-learn.git
branch = master
git-executable = ${git:location}/bin/git
[build-venv]
dependency = ${prerequired-eggs:recipe}
recipe = cp.recipe.cmd
location = ${buildout:parts-directory}/${:_buildout_section_name_}
install_cmd =
if [ -d ${:location} ]; then
exit
fi
mkdir -p ${:location}
cd ${:location}
unset PYTHONPATH
export PATH="${gcc-fortran:location}/bin:$PATH"
export LD_PRELOAD="${gcc-fortran:location}/lib64/libgfortran.so.3 ${libblas:location}/libf77blas.so.3"
export ATLAS=${libatlas:location}/lib/libsatlas.so
export BLAS=${libblas:location}/lib/libfblas.a
export LAPACK=${libatlas:location}/lib/liblapack.a
${python2.7-virtualenv:executable} ${:location}
. ${:location}/bin/activate
${:location}/bin/pip install numpy
${:location}/bin/pip install Tempita
export PYTHONPATH=${buildout:eggs-directory}/numpy-${versions:numpy}-py2.7-linux-x86_64.egg
cd ${scipy-repository.git:location}
python setupegg.py bdist_egg
cd ${scikit-learn-repository.git:location}
python setup.py bdist_egg
update_cmd = ${:install_cmd}
[prerequired-eggs]
recipe = zc.recipe.egg
eggs =
slapos.cookbook
numpy
[numpy-eggs]
dependencies = ${build-venv:recipe}
recipe = zc.recipe.egg
find-links =
${scipy-repository.git:location}/dist
${scikit-learn-repository.git:location}/dist
eggs =
numpy
scipy
scikit-learn
interpreter = python-numpy
[versions]
numpy = 1.8.1
scipy = 0.13.3001
scikit-learn = 0.16-git
# A minimal software release to test the numpy component (depends on gfortran).
[buildout]
extends =
../../stack/slapos.cfg
../../component/numpy/buildout.cfg
parts =
numpy-eggs
[versions]
numpy = 1.8.1
scipy = 0.13.3001
scikit-learn = 0.16-git
......@@ -66,6 +66,7 @@ extends =
../../component/aspell/buildout.cfg
../../component/cloudooo/buildout.cfg
../../component/jsl/buildout.cfg
../../component/numpy/buildout.cfg
parts =
rdiff-backup
......@@ -430,6 +431,7 @@ ZODB3-patch-binary = ${patch:location}/bin/patch
[eggs]
recipe = zc.recipe.egg
eggs =
${numpy-eggs:eggs}
${mysql-python:egg}
${lxml-python:egg}
${pil-python:egg}
......@@ -581,7 +583,7 @@ setuptools = 2.2
huBarcode = 0.63
# Known version with works
numpy = 1.6.2
numpy = 1.8.1
# test_UserManagerInterfaces in testERP5Security fails with 1.10.0.
Products.PluggableAuthService = 1.9.0
......
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